C09p65950.1_BnaDARv10-PA (polypeptide) Brassica napus

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameC09p65950.1_BnaDARv10-RA
Unique NameC09p65950.1_BnaDARv10-PA
Typepolypeptide
OrganismBrassica napus (cv. Darmor-bzh, rapeseed)
Sequence length153
Homology
BLAST of C09p65950.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD34095.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 298 bits (764), Expect = 4.180e-102
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 0
Query:    1 MNRRSVVLSLLLQKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGCN 152
            MNRRSVVLSLLLQKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNG N
Sbjct:    1 MNRRSVVLSLLLQKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGFN 152          
BLAST of C09p65950.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013608480.1 (PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Brassica oleracea var. oleracea])

HSP 1 Score: 284 bits (726), Expect = 2.700e-96
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0
Query:   13 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGCN 152
            QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGCN
Sbjct:   14 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGCN 153          
BLAST of C09p65950.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013710761.1 (aspartyl protease family protein At5g10770-like [Brassica napus])

HSP 1 Score: 278 bits (711), Expect = 2.780e-89
Identity = 137/140 (97.86%), Postives = 138/140 (98.57%), Query Frame = 0
Query:   13 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGCN 152
            QKLEIPP+VFSTPGALIDSGTVVSRLPPKAYAALRSAF AEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSG VVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGCN
Sbjct:  359 QKLEIPPTVFSTPGALIDSGTVVSRLPPKAYAALRSAFKAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGSVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGCN 498          
BLAST of C09p65950.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD20136.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 257 bits (656), Expect = 1.070e-85
Identity = 126/139 (90.65%), Postives = 132/139 (94.96%), Query Frame = 0
Query:   13 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGC 151
            +KLEIPP+VFSTPGA+IDSGTVVSRLPPKAYAALRSAFVA MSQYPTAAGFLILDTCFDFTG+E VTLPRVSFTFSGGVVVDL   GILYSPTTSYYCLAFAGNDDDGKAAIFG+ QQQTLEVV+DG GGRVGFAPNGC
Sbjct:    9 RKLEIPPAVFSTPGAIIDSGTVVSRLPPKAYAALRSAFVAGMSQYPTAAGFLILDTCFDFTGYERVTLPRVSFTFSGGVVVDLGLPGILYSPTTSYYCLAFAGNDDDGKAAIFGNLQQQTLEVVFDGAGGRVGFAPNGC 147          
BLAST of C09p65950.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_033138824.1 (aspartyl protease family protein At5g10770-like, partial [Brassica rapa])

HSP 1 Score: 259 bits (661), Expect = 2.540e-84
Identity = 127/139 (91.37%), Postives = 132/139 (94.96%), Query Frame = 0
Query:   13 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGC 151
            +KLEIPP+VFSTPGA+IDSGTVVSRLPPKAYAALRSAFVA MSQYPTAAGFLILDTCFDFTG+E VTLPRVSFTFSGGVVVDL   GILYSPTTSYYCLAFAGNDDDGKAAIFG+ QQQTLEVVYDG GGRVGFAPNGC
Sbjct:  157 RKLEIPPAVFSTPGAIIDSGTVVSRLPPKAYAALRSAFVAGMSQYPTAAGFLILDTCFDFTGYERVTLPRVSFTFSGGVVVDLGLPGILYSPTTSYYCLAFAGNDDDGKAAIFGNVQQQTLEVVYDGAGGRVGFAPNGC 295          
BLAST of C09p65950.1_BnaDARv10-RA vs. GenBank_protein
Match: BAF01928.1 (nucleoid DNA-binding protein cnd41 - like protein, partial [Arabidopsis thaliana])

HSP 1 Score: 209 bits (531), Expect = 3.740e-66
Identity = 101/140 (72.14%), Postives = 117/140 (83.57%), Query Frame = 0
Query:   13 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGCN 152
            QKL IP +VFSTPGALIDSGTV++RLPPKAYAALRS+F A+MS+YPT +G  ILDTCFD +GF+TVT+P+V+F+FSGG VV+L   GI Y    S  CLAFAGN DD  AAIFG+ QQQTLEVVYDG GGRVGFAPNGC+
Sbjct:   44 QKLPIPSTVFSTPGALIDSGTVITRLPPKAYAALRSSFKAKMSKYPTTSGVSILDTCFDLSGFKTVTIPKVAFSFSGGAVVELGSKGIFYVFKISQVCLAFAGNSDDSNAAIFGNVQQQTLEVVYDGAGGRVGFAPNGCS 183          
BLAST of C09p65950.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_010424699.1 (PREDICTED: aspartyl protease family protein At5g10770-like [Camelina sativa])

HSP 1 Score: 208 bits (530), Expect = 1.190e-64
Identity = 100/140 (71.43%), Postives = 117/140 (83.57%), Query Frame = 0
Query:   13 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGCN 152
            QKL IP +VFSTPGALIDSGTV++RLPPKAYAALRS F A+MS+YPT +G  ILDTCFD +GF+TVT+P+V+F+FSGG VV+L   G+ Y+   S  CLAFAGN DD  AAIFG+ QQQTLEVVYDG GGRVGFAPNGC+
Sbjct:  143 QKLAIPSTVFSTPGALIDSGTVITRLPPKAYAALRSEFKAKMSKYPTTSGVSILDTCFDLSGFKTVTIPKVAFSFSGGAVVELGSKGLFYAFKMSQVCLAFAGNSDDSNAAIFGNVQQQTLEVVYDGAGGRVGFAPNGCS 282          
BLAST of C09p65950.1_BnaDARv10-RA vs. GenBank_protein
Match: RID73211.1 (hypothetical protein BRARA_B00375 [Brassica rapa])

HSP 1 Score: 213 bits (543), Expect = 2.460e-64
Identity = 102/140 (72.86%), Postives = 120/140 (85.71%), Query Frame = 0
Query:   13 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGCN 152
            QKL I P+VFSTPGALIDSGTV++RLPPKAYAAL+ AF A+MSQYP+A+G  ILDTCFD +G +TVT+P+V+F+FSGG VV+L PTG+LY+   S  CLAFAGN DD  AAIFG+ QQQTLEVVYDG GGRVGFAPNGC+
Sbjct:  338 QKLAIAPTVFSTPGALIDSGTVITRLPPKAYAALKDAFKAKMSQYPSASGVSILDTCFDLSGLKTVTIPKVAFSFSGGAVVELGPTGVLYAFKMSQVCLAFAGNSDDTNAAIFGNVQQQTLEVVYDGAGGRVGFAPNGCS 477          
BLAST of C09p65950.1_BnaDARv10-RA vs. GenBank_protein
Match: AAM74221.1 (putative chloroplast nucleoid DNA-binding protein, partial [Brassica oleracea])

HSP 1 Score: 203 bits (516), Expect = 3.990e-64
Identity = 100/140 (71.43%), Postives = 112/140 (80.00%), Query Frame = 0
Query:   13 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGCN 152
            QKL IP +VFSTPGALIDSGTV+SRLPPKAYAALR AF A+MSQY   +   ILDTCFD TGF+TVT+P VSF F+GG VV+L   G+LY+   S  CLAFAGN DD  AAIFG+ QQQTLEVVYDG  GRVGFAPNGC+
Sbjct:   26 QKLAIPQTVFSTPGALIDSGTVISRLPPKAYAALRGAFKAKMSQYKNTSAVSILDTCFDLTGFKTVTIPTVSFYFNGGAVVELGSKGVLYAFKMSQVCLAFAGNSDDNNAAIFGNVQQQTLEVVYDGAAGRVGFAPNGCS 165          
BLAST of C09p65950.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_006287637.1 (aspartyl protease family protein At5g10770 [Capsella rubella] >EOA20535.1 hypothetical protein CARUB_v10000848mg [Capsella rubella])

HSP 1 Score: 212 bits (539), Expect = 1.060e-63
Identity = 102/140 (72.86%), Postives = 119/140 (85.00%), Query Frame = 0
Query:   13 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGCN 152
            QKL IP +VFSTPGALIDSGTV++RLPPKAYAALRS+F A+MS+YPTA+G  ILDTCFD +GF+TVT+P+V+F+FSGG VV+L   GI Y+   S  CLAFAGN DD  AAIFG+ QQQTLEVVYDG GGRVGFAPNGC+
Sbjct:  342 QKLAIPSTVFSTPGALIDSGTVITRLPPKAYAALRSSFKAQMSKYPTASGVSILDTCFDLSGFKTVTIPKVAFSFSGGAVVELGSKGIFYAFKISQVCLAFAGNSDDSNAAIFGNVQQQTLEVVYDGAGGRVGFAPNGCS 481          
The following BLAST results are available for this feature:
BLAST of C09p65950.1_BnaDARv10-RA vs. GenBank_protein
Analysis Date: 2021-04-17 (Diamond on Darmor-bzh OGS10 v10 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
VDD34095.14.180e-10299.34unnamed protein product [Brassica oleracea][more]
XP_013608480.12.700e-96100.00PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL... [more]
XP_013710761.12.780e-8997.86aspartyl protease family protein At5g10770-like [B... [more]
VDD20136.11.070e-8590.65unnamed protein product [Brassica rapa][more]
XP_033138824.12.540e-8491.37aspartyl protease family protein At5g10770-like, p... [more]
BAF01928.13.740e-6672.14nucleoid DNA-binding protein cnd41 - like protein,... [more]
XP_010424699.11.190e-6471.43PREDICTED: aspartyl protease family protein At5g10... [more]
RID73211.12.460e-6472.86hypothetical protein BRARA_B00375 [Brassica rapa][more]
AAM74221.13.990e-6471.43putative chloroplast nucleoid DNA-binding protein,... [more]
XP_006287637.11.060e-6372.86aspartyl protease family protein At5g10770 [Capsel... [more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterProScan on Darmor-bzh OGS10 v10
Date Performed: 2021-04-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021109Aspartic peptidase domain superfamilyGENE3D2.40.70.10Acid Proteasescoord: 8..152
e-value: 2.2E-35
score: 123.9
IPR021109Aspartic peptidase domain superfamilySUPERFAMILY50630Acid proteasescoord: 14..151
IPR032799Xylanase inhibitor, C-terminalPFAMPF14541TAXi_Ccoord: 13..147
e-value: 1.1E-21
score: 77.3
NoneNo IPR availablePANTHERPTHR13683:SF750ASPARTYL PROTEASE AED1coord: 13..152
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..152
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..15
IPR001461Aspartic peptidase A1 familyPANTHERPTHR13683ASPARTYL PROTEASEScoord: 13..152
IPR033121Peptidase family A1 domainPROSITEPS51767PEPTIDASE_A1coord: 1..147
score: 18.713

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C09_BnaDARv10contigC09_BnaDARv10:60693277..60694854 +    View in Apollo
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on Darmor-bzh OGS10 v102021-04-17
Diamond on Darmor-bzh OGS10 v10 vs NR2021-04-17
Blast2GO on Darmor-bzh OGS10 v102021-04-17
Darmor-bzh OGS10 v102020-07-22
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
C09p65950.1_BnaDARv10-RAC09p65950.1_BnaDARv10-RABrassica napusmRNAC09_BnaDARv10 60693277..60694854 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>C09p65950.1_BnaDARv10-PA ID=C09p65950.1_BnaDARv10-PA|Name=C09p65950.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=153bp
MNRRSVVLSLLLQKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAF
VAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGI
LYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNG
CN.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033121PEPTIDASE_A1
IPR001461Aspartic_peptidase_A1
IPR032799TAXi_C
IPR021109Peptidase_aspartic_dom_sf
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: Molecular Function
TermDefinition
GO:0004190aspartic-type endopeptidase activity
GO:0003677DNA binding