C09p65950.1_BnaDARv10-PA (polypeptide) Brassica napus

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	C09p65950.1_BnaDARv10-RA
Unique Name	C09p65950.1_BnaDARv10-PA
Type	polypeptide
Organism	Brassica napus (cv. Darmor-bzh, rapeseed)
Sequence length	153

Homology

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BLAST of C09p65950.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD34095.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 298 bits (764), Expect = 4.180e-102
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 0

Query:    1 MNRRSVVLSLLLQKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGCN 152
            MNRRSVVLSLLLQKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNG N
Sbjct:    1 MNRRSVVLSLLLQKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGFN 152

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BLAST of C09p65950.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013608480.1 (PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Brassica oleracea var. oleracea])

HSP 1 Score: 284 bits (726), Expect = 2.700e-96
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0

Query:   13 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGCN 152
            QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGCN
Sbjct:   14 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGCN 153

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BLAST of C09p65950.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013710761.1 (aspartyl protease family protein At5g10770-like [Brassica napus])

HSP 1 Score: 278 bits (711), Expect = 2.780e-89
Identity = 137/140 (97.86%), Postives = 138/140 (98.57%), Query Frame = 0

Query:   13 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGCN 152
            QKLEIPP+VFSTPGALIDSGTVVSRLPPKAYAALRSAF AEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSG VVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGCN
Sbjct:  359 QKLEIPPTVFSTPGALIDSGTVVSRLPPKAYAALRSAFKAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGSVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGCN 498

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BLAST of C09p65950.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD20136.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 257 bits (656), Expect = 1.070e-85
Identity = 126/139 (90.65%), Postives = 132/139 (94.96%), Query Frame = 0

Query:   13 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGC 151
            +KLEIPP+VFSTPGA+IDSGTVVSRLPPKAYAALRSAFVA MSQYPTAAGFLILDTCFDFTG+E VTLPRVSFTFSGGVVVDL   GILYSPTTSYYCLAFAGNDDDGKAAIFG+ QQQTLEVV+DG GGRVGFAPNGC
Sbjct:    9 RKLEIPPAVFSTPGAIIDSGTVVSRLPPKAYAALRSAFVAGMSQYPTAAGFLILDTCFDFTGYERVTLPRVSFTFSGGVVVDLGLPGILYSPTTSYYCLAFAGNDDDGKAAIFGNLQQQTLEVVFDGAGGRVGFAPNGC 147

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BLAST of C09p65950.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_033138824.1 (aspartyl protease family protein At5g10770-like, partial [Brassica rapa])

HSP 1 Score: 259 bits (661), Expect = 2.540e-84
Identity = 127/139 (91.37%), Postives = 132/139 (94.96%), Query Frame = 0

Query:   13 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGC 151
            +KLEIPP+VFSTPGA+IDSGTVVSRLPPKAYAALRSAFVA MSQYPTAAGFLILDTCFDFTG+E VTLPRVSFTFSGGVVVDL   GILYSPTTSYYCLAFAGNDDDGKAAIFG+ QQQTLEVVYDG GGRVGFAPNGC
Sbjct:  157 RKLEIPPAVFSTPGAIIDSGTVVSRLPPKAYAALRSAFVAGMSQYPTAAGFLILDTCFDFTGYERVTLPRVSFTFSGGVVVDLGLPGILYSPTTSYYCLAFAGNDDDGKAAIFGNVQQQTLEVVYDGAGGRVGFAPNGC 295

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BLAST of C09p65950.1_BnaDARv10-RA vs. GenBank_protein
Match: BAF01928.1 (nucleoid DNA-binding protein cnd41 - like protein, partial [Arabidopsis thaliana])

HSP 1 Score: 209 bits (531), Expect = 3.740e-66
Identity = 101/140 (72.14%), Postives = 117/140 (83.57%), Query Frame = 0

Query:   13 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGCN 152
            QKL IP +VFSTPGALIDSGTV++RLPPKAYAALRS+F A+MS+YPT +G  ILDTCFD +GF+TVT+P+V+F+FSGG VV+L   GI Y    S  CLAFAGN DD  AAIFG+ QQQTLEVVYDG GGRVGFAPNGC+
Sbjct:   44 QKLPIPSTVFSTPGALIDSGTVITRLPPKAYAALRSSFKAKMSKYPTTSGVSILDTCFDLSGFKTVTIPKVAFSFSGGAVVELGSKGIFYVFKISQVCLAFAGNSDDSNAAIFGNVQQQTLEVVYDGAGGRVGFAPNGCS 183

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BLAST of C09p65950.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_010424699.1 (PREDICTED: aspartyl protease family protein At5g10770-like [Camelina sativa])

HSP 1 Score: 208 bits (530), Expect = 1.190e-64
Identity = 100/140 (71.43%), Postives = 117/140 (83.57%), Query Frame = 0

Query:   13 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGCN 152
            QKL IP +VFSTPGALIDSGTV++RLPPKAYAALRS F A+MS+YPT +G  ILDTCFD +GF+TVT+P+V+F+FSGG VV+L   G+ Y+   S  CLAFAGN DD  AAIFG+ QQQTLEVVYDG GGRVGFAPNGC+
Sbjct:  143 QKLAIPSTVFSTPGALIDSGTVITRLPPKAYAALRSEFKAKMSKYPTTSGVSILDTCFDLSGFKTVTIPKVAFSFSGGAVVELGSKGLFYAFKMSQVCLAFAGNSDDSNAAIFGNVQQQTLEVVYDGAGGRVGFAPNGCS 282

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BLAST of C09p65950.1_BnaDARv10-RA vs. GenBank_protein
Match: RID73211.1 (hypothetical protein BRARA_B00375 [Brassica rapa])

HSP 1 Score: 213 bits (543), Expect = 2.460e-64
Identity = 102/140 (72.86%), Postives = 120/140 (85.71%), Query Frame = 0

Query:   13 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGCN 152
            QKL I P+VFSTPGALIDSGTV++RLPPKAYAAL+ AF A+MSQYP+A+G  ILDTCFD +G +TVT+P+V+F+FSGG VV+L PTG+LY+   S  CLAFAGN DD  AAIFG+ QQQTLEVVYDG GGRVGFAPNGC+
Sbjct:  338 QKLAIAPTVFSTPGALIDSGTVITRLPPKAYAALKDAFKAKMSQYPSASGVSILDTCFDLSGLKTVTIPKVAFSFSGGAVVELGPTGVLYAFKMSQVCLAFAGNSDDTNAAIFGNVQQQTLEVVYDGAGGRVGFAPNGCS 477

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BLAST of C09p65950.1_BnaDARv10-RA vs. GenBank_protein
Match: AAM74221.1 (putative chloroplast nucleoid DNA-binding protein, partial [Brassica oleracea])

HSP 1 Score: 203 bits (516), Expect = 3.990e-64
Identity = 100/140 (71.43%), Postives = 112/140 (80.00%), Query Frame = 0

Query:   13 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGCN 152
            QKL IP +VFSTPGALIDSGTV+SRLPPKAYAALR AF A+MSQY   +   ILDTCFD TGF+TVT+P VSF F+GG VV+L   G+LY+   S  CLAFAGN DD  AAIFG+ QQQTLEVVYDG  GRVGFAPNGC+
Sbjct:   26 QKLAIPQTVFSTPGALIDSGTVISRLPPKAYAALRGAFKAKMSQYKNTSAVSILDTCFDLTGFKTVTIPTVSFYFNGGAVVELGSKGVLYAFKMSQVCLAFAGNSDDNNAAIFGNVQQQTLEVVYDGAAGRVGFAPNGCS 165

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BLAST of C09p65950.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_006287637.1 (aspartyl protease family protein At5g10770 [Capsella rubella] >EOA20535.1 hypothetical protein CARUB_v10000848mg [Capsella rubella])

HSP 1 Score: 212 bits (539), Expect = 1.060e-63
Identity = 102/140 (72.86%), Postives = 119/140 (85.00%), Query Frame = 0

Query:   13 QKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAFVAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGILYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNGCN 152
            QKL IP +VFSTPGALIDSGTV++RLPPKAYAALRS+F A+MS+YPTA+G  ILDTCFD +GF+TVT+P+V+F+FSGG VV+L   GI Y+   S  CLAFAGN DD  AAIFG+ QQQTLEVVYDG GGRVGFAPNGC+
Sbjct:  342 QKLAIPSTVFSTPGALIDSGTVITRLPPKAYAALRSSFKAQMSKYPTASGVSILDTCFDLSGFKTVTIPKVAFSFSGGAVVELGSKGIFYAFKISQVCLAFAGNSDDSNAAIFGNVQQQTLEVVYDGAGGRVGFAPNGCS 481

The following BLAST results are available for this feature:

BLAST of C09p65950.1_BnaDARv10-RA vs. GenBank_protein

BLAST of C09p65950.1_BnaDARv10-RA vs. GenBank_protein
Analysis Date: 2021-04-17 (Diamond on Darmor-bzh OGS10 v10 vs NR)
Total hits: 20

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POSITION

0


Match Name	E-value	Identity	Description
VDD34095.1	4.180e-102	99.34	unnamed protein product [Brassica oleracea]	[more]
XP_013608480.1	2.700e-96	100.00	PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL...	[more]
XP_013710761.1	2.780e-89	97.86	aspartyl protease family protein At5g10770-like [B...	[more]
VDD20136.1	1.070e-85	90.65	unnamed protein product [Brassica rapa]	[more]
XP_033138824.1	2.540e-84	91.37	aspartyl protease family protein At5g10770-like, p...	[more]
BAF01928.1	3.740e-66	72.14	nucleoid DNA-binding protein cnd41 - like protein,...	[more]
XP_010424699.1	1.190e-64	71.43	PREDICTED: aspartyl protease family protein At5g10...	[more]
RID73211.1	2.460e-64	72.86	hypothetical protein BRARA_B00375 [Brassica rapa]	[more]
AAM74221.1	3.990e-64	71.43	putative chloroplast nucleoid DNA-binding protein,...	[more]
XP_006287637.1	1.060e-63	72.86	aspartyl protease family protein At5g10770 [Capsel...	[more]

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GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003677	DNA binding

InterPro

Analysis Name: InterProScan on Darmor-bzh OGS10 v10
Date Performed: 2021-04-17

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POSITION

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 8..152 e-value: 2.2E-35 score: 123.9
IPR021109	Aspartic peptidase domain superfamily	SUPERFAMILY	50630	Acid proteases	coord: 14..151
IPR032799	Xylanase inhibitor, C-terminal	PFAM	PF14541	TAXi_C	coord: 13..147 e-value: 1.1E-21 score: 77.3
None	No IPR available	PANTHER	PTHR13683:SF750	ASPARTYL PROTEASE AED1	coord: 13..152
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 24..152
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 16..23
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..23
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..4
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 5..15
IPR001461	Aspartic peptidase A1 family	PANTHER	PTHR13683	ASPARTYL PROTEASES	coord: 13..152
IPR033121	Peptidase family A1 domain	PROSITE	PS51767	PEPTIDASE_A1	coord: 1..147 score: 18.713

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C09_BnaDARv10	contig	C09_BnaDARv10:60693277..60694854 + View in Apollo

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on Darmor-bzh OGS10 v10	2021-04-17
Diamond on Darmor-bzh OGS10 v10 vs NR	2021-04-17
Blast2GO on Darmor-bzh OGS10 v10	2021-04-17
Darmor-bzh OGS10 v10	2020-07-22

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
C09p65950.1_BnaDARv10-RA	C09p65950.1_BnaDARv10-RA	Brassica napus	mRNA	C09_BnaDARv10 60693277..60694854 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>C09p65950.1_BnaDARv10-PA ID=C09p65950.1_BnaDARv10-PA|Name=C09p65950.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=153bp
MNRRSVVLSLLLQKLEIPPSVFSTPGALIDSGTVVSRLPPKAYAALRSAF
VAEMSQYPTAAGFLILDTCFDFTGFETVTLPRVSFTFSGGVVVDLEPTGI
LYSPTTSYYCLAFAGNDDDGKAAIFGSAQQQTLEVVYDGVGGRVGFAPNG
CN.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR033121	PEPTIDASE_A1
IPR001461	Aspartic_peptidase_A1
IPR032799	TAXi_C
IPR021109	Peptidase_aspartic_dom_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

Vocabulary: **Molecular Function**
Term	Definition
GO:0004190	aspartic-type endopeptidase activity
GO:0003677	DNA binding

Orthology

View orthology data for C09p65950.1_BnaDARv10-PA

Metabolic Model

View data from metabolic model for C09p65950.1_BnaDARv10-PA