Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
| Analysis Name | Date Performed |
|---|
| Brassica rapa chifu OGS3.5 | 2021-11-28 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BraA01g001070.3.5C | BraA01g001070.3.5C | Brassica rapa chifu | gene | A01 517237..521474 + |
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BraA01g001070.3.5C.9.utr5p1 | BraA01g001070.3.5C.9.utr5p1 | Brassica rapa chifu | five_prime_UTR | A01 518538..518571 + |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BraA01g001070.3.5C.9.exon1 | BraA01g001070.3.5C.9.exon1 | Brassica rapa chifu | exon | A01 518538..518652 + |
| BraA01g001070.3.5C.9.exon2 | BraA01g001070.3.5C.9.exon2 | Brassica rapa chifu | exon | A01 518722..518772 + |
| BraA01g001070.3.5C.9.exon3 | BraA01g001070.3.5C.9.exon3 | Brassica rapa chifu | exon | A01 518904..518990 + |
| BraA01g001070.3.5C.9.exon4 | BraA01g001070.3.5C.9.exon4 | Brassica rapa chifu | exon | A01 519069..519190 + |
| BraA01g001070.3.5C.9.exon5 | BraA01g001070.3.5C.9.exon5 | Brassica rapa chifu | exon | A01 519296..519372 + |
| BraA01g001070.3.5C.9.exon6 | BraA01g001070.3.5C.9.exon6 | Brassica rapa chifu | exon | A01 519454..519578 + |
| BraA01g001070.3.5C.9.exon7 | BraA01g001070.3.5C.9.exon7 | Brassica rapa chifu | exon | A01 519670..519762 + |
| BraA01g001070.3.5C.9.exon8 | BraA01g001070.3.5C.9.exon8 | Brassica rapa chifu | exon | A01 519840..519907 + |
| BraA01g001070.3.5C.9.exon9 | BraA01g001070.3.5C.9.exon9 | Brassica rapa chifu | exon | A01 520075..520203 + |
| BraA01g001070.3.5C.9.exon10 | BraA01g001070.3.5C.9.exon10 | Brassica rapa chifu | exon | A01 520289..520393 + |
| BraA01g001070.3.5C.9.exon11 | BraA01g001070.3.5C.9.exon11 | Brassica rapa chifu | exon | A01 520465..520530 + |
| BraA01g001070.3.5C.9.exon12 | BraA01g001070.3.5C.9.exon12 | Brassica rapa chifu | exon | A01 520614..520691 + |
| BraA01g001070.3.5C.9.exon13 | BraA01g001070.3.5C.9.exon13 | Brassica rapa chifu | exon | A01 520777..520888 + |
| BraA01g001070.3.5C.9.exon14 | BraA01g001070.3.5C.9.exon14 | Brassica rapa chifu | exon | A01 520952..521062 + |
| BraA01g001070.3.5C.9.exon15 | BraA01g001070.3.5C.9.exon15 | Brassica rapa chifu | exon | A01 521159..521428 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| cds.BraA01g001070.3.5C.9 | cds.BraA01g001070.3.5C.9 | Brassica rapa chifu | CDS | A01 518572..518652 + |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BraA01g001070.3.5C.9.utr3p1 | BraA01g001070.3.5C.9.utr3p1 | Brassica rapa chifu | three_prime_UTR | A01 520079..520203 + |
| BraA01g001070.3.5C.9.utr3p2 | BraA01g001070.3.5C.9.utr3p2 | Brassica rapa chifu | three_prime_UTR | A01 520289..520393 + |
| BraA01g001070.3.5C.9.utr3p3 | BraA01g001070.3.5C.9.utr3p3 | Brassica rapa chifu | three_prime_UTR | A01 520465..520530 + |
| BraA01g001070.3.5C.9.utr3p4 | BraA01g001070.3.5C.9.utr3p4 | Brassica rapa chifu | three_prime_UTR | A01 520614..520691 + |
| BraA01g001070.3.5C.9.utr3p5 | BraA01g001070.3.5C.9.utr3p5 | Brassica rapa chifu | three_prime_UTR | A01 520777..520888 + |
| BraA01g001070.3.5C.9.utr3p6 | BraA01g001070.3.5C.9.utr3p6 | Brassica rapa chifu | three_prime_UTR | A01 520952..521062 + |
| BraA01g001070.3.5C.9.utr3p7 | BraA01g001070.3.5C.9.utr3p7 | Brassica rapa chifu | three_prime_UTR | A01 521159..521428 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >BraA01g001070.3.5C.9 ID=BraA01g001070.3.5C.9|Name=BraA01g001070.3.5C.9|organism=Brassica rapa chifu|type=mRNA|length=1609bp|location=Sequence derived from alignment at A01:518538..521428+ (Brassica rapa chifu)|Notes=Excludes all bases but those of type(s): exon.
AGAGAGAGAGGCAGAGAGGTTGGTGAGAATGGCGATGGCTATGGCTCTTC
GGAGGCTTTCTTCTTCAGTTGACAAACCTATTCGTCCTCTTATCAGATCA
TCTTCATGCTACATGTCTTCTTTGCCAAGTGAAGCTGTTGATGACAAGGA
GAGATCTCGTGTCACTTGGCCAAAACAGCTTAACGCATCTTTGGAGGAAG
TTGATCCTGAGATTGCTGACATCATTGAGCATGAGAAAGCTAGACAATGG
AAGGGACTTGAACTCATTCCATCTGAGAATTTCACATCTGTCTCGGTGAT
GCAAGCTGTTGGCTCTGTGATGACTAACAAGTACAGTGAAGGGTACCCTG
GTGCTAGATACTATGGAGGAAATGAGTTCATAGACATGGCGGAAACCTTG
TGCCAGAAGCGTGCTCTTGAAGCTTTCCGGTTAGACCCTGAGAAGTGGGG
AGTGAATGTGCAACCTTTGTCTGGATCACCTGCCAACTTCCATGTGTACA
CTGCATTGTTGAAGCCTCATGAGAGAATCATGGCACTTGATCTTCCTCAT
GGTGGTCATCTTTCTCATGGTTACCAGACTGATACCAAGAAGATATCTGC
TGTGTCTATCTTTTTTGAAACTATGCCCTACCGCTTGGACGAGAGCACTG
GCTTTATCGACTACGACCAGATGGAGAAGAGTGCTACTCTTTTCAGGCCA
AAACTGATTGTTGCTGGTGCAAGTGCTTATGCTCGATTGTAATCCCTTCA
CCGTTCGAGTATGCAGATGTTGTAACCACCACAACTCACAAGTCCCTACG
TGGACCTCGCGGAGCCATGATTTTCTACAGAAAGGGTGTTAAGGAAATTA
ACAAACAAGGCAAAGAGGTTTTGTATGATTTTGAAGACAAGATCAATCAA
GCTGTCTTCCCTGGTCTTCAAGGCGGTCCACATAACCACACTATTACAGG
ACTAGCTGTTGCTTTAAAGCAGGCAACTACTTCAGAGTACAAAGCATACC
AAGAGCAAGTCCTCAGTAACTCTGCAAAGTTTGCTCAGACTCTGATGGAG
AAAGGTTATGAACTTGTTTCTGGTGGAACTGACAACCATCTGGTTCTAGT
GAACCTGAAGCCCAAGGGAATTGATGGATCTAGAGTTGAGAAAGTGTTGG
AAGCTGTTCACATTGCATCCAACAAAAACACTGTTCCTGGAGATGTTTCT
GCCATGGTTCCTGGTGGAATCAGAATGGGTACACCTGCTCTCACTTCCAG
AGGTTTTGTTGAGGAAGACTTTGCCAAAGTAGCTGAATACTTTGACAAAG
CTGTGAAGTTGGCTCTCAAAGTCAAATCCGAAGCTCAAGGAACCAAGCTG
AAAGATTTTGTGTCAGCAATGGAATCATCTTCAGCCATTCAATCAGAGAT
TGCCAAGCTGCGCCACGACGTGGAGGAGTTCGCTAAGCAGTTCCCAACTA
TTGGGTTTGAGAAAGAAACCATGAAGTACAAGAACTGAATATGTCTTTAT
CCCTACAAACAAGTCTTTTATTATGATGATGCTTTGAACTTCCATGTAAT
GTATAGATAATGATGCATGTACTCTATCTTATGGTATGTGAAAAATAATT
GAACTTTCA back to topprotein sequence of BraA01g001070.3.5C.9 >BraA01g001070.3.5C.9-P1 ID=BraA01g001070.3.5C.9-P1|Name=BraA01g001070.3.5C.9|organism=Brassica rapa chifu|type=polypeptide|length=236bp
MAMALRRLSSSVDKPIRPLIRSSSCYMSSLPSEAVDDKERSRVTWPKQLN
ASLEEVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKY
SEGYPGARYYGGNEFIDMAETLCQKRALEAFRLDPEKWGVNVQPLSGSPA
NFHVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR
LDESTGFIDYDQMEKSATLFRPKLIVAGASAYARL. back to topmRNA from alignment at A01:518538..521428+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >BraA01g001070.3.5C.9 ID=BraA01g001070.3.5C.9|Name=BraA01g001070.3.5C.9|organism=Brassica rapa chifu|type=mRNA|length=2891bp|location=Sequence derived from alignment at A01:518538..521428+ (Brassica rapa chifu)
AGAGAGAGAGGCAGAGAGGTTGGTGAGAATGGCGATGGCTATGGCTCTTC
GGAGGCTTTCTTCTTCAGTTGACAAACCTATTCGTCCTCTTATCAGATCA
TCTTCATGCTACATGGTAACTCCCCCATGAATCCTATCAGGACAGAATCT
TGTGTTTCTGATTTGTGGTTGTTGTTTCTTACAGTCTTCTTTGCCAAGTG
AAGCTGTTGATGACAAGGAGAGATCTCGTGTCACTGTAAGCTTTTGTTTC
TTCCTTGCTCTCCTTAAAAACCCTTTTGTCTTAATCTCCAGCGGTTGATT
AGTTTCCTTGCGGCTCAAGCAATGATTTAGGTTAATGAAGTTCTGCCTCT
TTTTTGTTCCTTGCAGTGGCCAAAACAGCTTAACGCATCTTTGGAGGAAG
TTGATCCTGAGATTGCTGACATCATTGAGCATGAGAAAGCTAGACAATGG
AAGGTTATTTATTAGTCTCTCTTAATATCTTGTTCCTTCTGTAACTTGGA
CTGATCTTTGTAATGATTAATGTTATCAAAGGGACTTGAACTCATTCCAT
CTGAGAATTTCACATCTGTCTCGGTGATGCAAGCTGTTGGCTCTGTGATG
ACTAACAAGTACAGTGAAGGGTACCCTGGTGCTAGATACTATGGAGGAAA
TGAGTATGTTCAGACTTCTTTTTTTTTTTTTTTTTTGCAATCAGAGTCAG
AAATTCAGTTTCAGATCGTAGACATGGTTGTTTGACCAATCTTGACTTCT
TTTTGAAGGTTCATAGACATGGCGGAAACCTTGTGCCAGAAGCGTGCTCT
TGAAGCTTTCCGGTTAGACCCTGAGAAGTGGGGAGGTAATTAGACCAACT
CATTTCTTGTATTTGACTTGTGTATGATCCTTTGATGGCTTATTCTGAGT
CATGTTGATTATACAGTGAATGTGCAACCTTTGTCTGGATCACCTGCCAA
CTTCCATGTGTACACTGCATTGTTGAAGCCTCATGAGAGAATCATGGCAC
TTGATCTTCCTCATGGTGGTCATCTTTCTCATGGTTACCAGGTACCTTCA
TTAATTATTATCCTGTTAATGAAACTGATTATGTGTTCTGATTTATAAGA
GTTTGTTTGTTTTCTCTTTGTATCTCATGCAGACTGATACCAAGAAGATA
TCTGCTGTGTCTATCTTTTTTGAAACTATGCCCTACCGCTTGGACGAGAG
CACTGGCTTTATCGACTACGACCAGGTTCATTATTATTCAATTAAGTAAC
AACACTACTTCATATTGTTTAATCATACAGCTTATTAATCTTTGATCTGC
AGATGGAGAAGAGTGCTACTCTTTTCAGGCCAAAACTGATTGTTGCTGGT
GCAAGTGCTTATGCTCGATTGTATGACTATGCCCGCATCCGCAAGGTAGT
ATTATTCAATATCATATTCTATTGTAAATCAAGAGTTGAGTTCTGAGTCC
AATTAACTCTGTTGGCAGGTGTGCAACAAGCAAAAAGCTGTGATGCTAGC
AGATATGGCACACATAAGCGGTTTGGTAGCAGCTGGTGTAATCCCTTCAC
CGTTCGAGTATGCAGATGTTGTAACCACCACAACTCACAAGTCCCTACGT
GGACCTCGCGGAGCCATGATTTTCTACAGAAAGGGTGTTAAGGAAATTAA
CAAACAAGGCAAAGAGGTAAATAAACAAAATACTAAAATGTTTTGTGAGA
TTTATCTATACTCTTTATAATATCTCATTCATTTGGTTGTTTCTTTGAAA
GGTTTTGTATGATTTTGAAGACAAGATCAATCAAGCTGTCTTCCCTGGTC
TTCAAGGCGGTCCACATAACCACACTATTACAGGACTAGCTGTTGCTTTA
AAGCAGGTACATTGAATGGAACTAAAATTTCTTATTGGACTTGCAGTTTC
TTTAATGATTTTTTTTTTAAATTGCAGGCAACTACTTCAGAGTACAAAGC
ATACCAAGAGCAAGTCCTCAGTAACTCTGCAAAGTTTGCTCAGGTGAATA
AGAAAAAAAGAACCATATATGTACATTATTTACTGTTGACTTTATCTATA
GAATGTCTACTTATTTTTTGATGCAGACTCTGATGGAGAAAGGTTATGAA
CTTGTTTCTGGTGGAACTGACAACCATCTGGTTCTAGTGAACCTGAAGCC
CAAGGTCACTTGATCTTTATTTGTTATATTATCTTCTTACTTCAAAAATC
CTTTTTATTTATTTATCTGTTTTTTTTTTTGGTTTGCAGGGAATTGATGG
ATCTAGAGTTGAGAAAGTGTTGGAAGCTGTTCACATTGCATCCAACAAAA
ACACTGTTCCTGGAGATGTTTCTGCCATGGTTCCTGGTGGAATCAGAATG
GGTAAGAATCATTACTTATGCTTTTCCTTTGAAACCTCACCCTGAAATTT
CTCTGCCATTTTAGGTACACCTGCTCTCACTTCCAGAGGTTTTGTTGAGG
AAGACTTTGCCAAAGTAGCTGAATACTTTGACAAAGCTGTGAAGTTGGCT
CTCAAAGTCAAATCCGAAGCTCAAGGTTGATTCATTTCTCTGATCAAATG
ATTCTTTATGTTTTTCTGTTCCATATAAGCAAATGCTAGATAACTCGTTT
GTTGTGTTATAAAAAATACAGGAACCAAGCTGAAAGATTTTGTGTCAGCA
ATGGAATCATCTTCAGCCATTCAATCAGAGATTGCCAAGCTGCGCCACGA
CGTGGAGGAGTTCGCTAAGCAGTTCCCAACTATTGGGTTTGAGAAAGAAA
CCATGAAGTACAAGAACTGAATATGTCTTTATCCCTACAAACAAGTCTTT
TATTATGATGATGCTTTGAACTTCCATGTAATGTATAGATAATGATGCAT
GTACTCTATCTTATGGTATGTGAAAAATAATTGAACTTTCA back to topCoding sequence (CDS) from alignment at A01:518538..521428+ >BraA01g001070.3.5C.9 ID=BraA01g001070.3.5C.9|Name=BraA01g001070.3.5C.9|organism=Brassica rapa chifu|type=CDS|length=708bp|location=Sequence derived from alignment at A01:518538..521428+ (Brassica rapa chifu)
ATGGCTATGGCTCTTCGGAGGCTTTCTTCTTCAGTTGACAAACCTATTCG
TCCTCTTATCAGATCATCTTCATGCTACATGTCTTCTTTGCCAAGTGAAG
CTGTTGATGACAAGGAGAGATCTCGTGTCACTTGGCCAAAACAGCTTAAC
GCATCTTTGGAGGAAGTTGATCCTGAGATTGCTGACATCATTGAGCATGA
GAAAGCTAGACAATGGAAGGGACTTGAACTCATTCCATCTGAGAATTTCA
CATCTGTCTCGGTGATGCAAGCTGTTGGCTCTGTGATGACTAACAAGTAC
AGTGAAGGGTACCCTGGTGCTAGATACTATGGAGGAAATGAGTTCATAGA
CATGGCGGAAACCTTGTGCCAGAAGCGTGCTCTTGAAGCTTTCCGGTTAG
ACCCTGAGAAGTGGGGAGTGAATGTGCAACCTTTGTCTGGATCACCTGCC
AACTTCCATGTGTACACTGCATTGTTGAAGCCTCATGAGAGAATCATGGC
ACTTGATCTTCCTCATGGTGGTCATCTTTCTCATGGTTACCAGACTGATA
CCAAGAAGATATCTGCTGTGTCTATCTTTTTTGAAACTATGCCCTACCGC
TTGGACGAGAGCACTGGCTTTATCGACTACGACCAGATGGAGAAGAGTGC
TACTCTTTTCAGGCCAAAACTGATTGTTGCTGGTGCAAGTGCTTATGCTC
GATTGTAA back to top
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