BraA01g001070.3.5C.9 (mRNA) Brassica rapa chifu

You are viewing an mRNA, more information available on the corresponding polypeptide page

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Brassica rapa chifu OGS3.5	2021-11-28

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
BraA01g001070.3.5C	BraA01g001070.3.5C	Brassica rapa chifu	gene	A01 517237..521474 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
BraA01g001070.3.5C.9	BraA01g001070.3.5C.9-P1	Brassica rapa chifu	polypeptide	A01 518572..520078 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BraA01g001070.3.5C.9.utr5p1	BraA01g001070.3.5C.9.utr5p1	Brassica rapa chifu	five_prime_UTR	A01 518538..518571 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BraA01g001070.3.5C.9.exon1	BraA01g001070.3.5C.9.exon1	Brassica rapa chifu	exon	A01 518538..518652 +
BraA01g001070.3.5C.9.exon2	BraA01g001070.3.5C.9.exon2	Brassica rapa chifu	exon	A01 518722..518772 +
BraA01g001070.3.5C.9.exon3	BraA01g001070.3.5C.9.exon3	Brassica rapa chifu	exon	A01 518904..518990 +
BraA01g001070.3.5C.9.exon4	BraA01g001070.3.5C.9.exon4	Brassica rapa chifu	exon	A01 519069..519190 +
BraA01g001070.3.5C.9.exon5	BraA01g001070.3.5C.9.exon5	Brassica rapa chifu	exon	A01 519296..519372 +
BraA01g001070.3.5C.9.exon6	BraA01g001070.3.5C.9.exon6	Brassica rapa chifu	exon	A01 519454..519578 +
BraA01g001070.3.5C.9.exon7	BraA01g001070.3.5C.9.exon7	Brassica rapa chifu	exon	A01 519670..519762 +
BraA01g001070.3.5C.9.exon8	BraA01g001070.3.5C.9.exon8	Brassica rapa chifu	exon	A01 519840..519907 +
BraA01g001070.3.5C.9.exon9	BraA01g001070.3.5C.9.exon9	Brassica rapa chifu	exon	A01 520075..520203 +
BraA01g001070.3.5C.9.exon10	BraA01g001070.3.5C.9.exon10	Brassica rapa chifu	exon	A01 520289..520393 +
BraA01g001070.3.5C.9.exon11	BraA01g001070.3.5C.9.exon11	Brassica rapa chifu	exon	A01 520465..520530 +
BraA01g001070.3.5C.9.exon12	BraA01g001070.3.5C.9.exon12	Brassica rapa chifu	exon	A01 520614..520691 +
BraA01g001070.3.5C.9.exon13	BraA01g001070.3.5C.9.exon13	Brassica rapa chifu	exon	A01 520777..520888 +
BraA01g001070.3.5C.9.exon14	BraA01g001070.3.5C.9.exon14	Brassica rapa chifu	exon	A01 520952..521062 +
BraA01g001070.3.5C.9.exon15	BraA01g001070.3.5C.9.exon15	Brassica rapa chifu	exon	A01 521159..521428 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
cds.BraA01g001070.3.5C.9	cds.BraA01g001070.3.5C.9	Brassica rapa chifu	CDS	A01 518572..518652 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BraA01g001070.3.5C.9.utr3p1	BraA01g001070.3.5C.9.utr3p1	Brassica rapa chifu	three_prime_UTR	A01 520079..520203 +
BraA01g001070.3.5C.9.utr3p2	BraA01g001070.3.5C.9.utr3p2	Brassica rapa chifu	three_prime_UTR	A01 520289..520393 +
BraA01g001070.3.5C.9.utr3p3	BraA01g001070.3.5C.9.utr3p3	Brassica rapa chifu	three_prime_UTR	A01 520465..520530 +
BraA01g001070.3.5C.9.utr3p4	BraA01g001070.3.5C.9.utr3p4	Brassica rapa chifu	three_prime_UTR	A01 520614..520691 +
BraA01g001070.3.5C.9.utr3p5	BraA01g001070.3.5C.9.utr3p5	Brassica rapa chifu	three_prime_UTR	A01 520777..520888 +
BraA01g001070.3.5C.9.utr3p6	BraA01g001070.3.5C.9.utr3p6	Brassica rapa chifu	three_prime_UTR	A01 520952..521062 +
BraA01g001070.3.5C.9.utr3p7	BraA01g001070.3.5C.9.utr3p7	Brassica rapa chifu	three_prime_UTR	A01 521159..521428 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at A01:518538..521428+
coding sequence from alignment at A01:518538..521428+

spliced messenger RNA

>BraA01g001070.3.5C.9 ID=BraA01g001070.3.5C.9|Name=BraA01g001070.3.5C.9|organism=Brassica rapa chifu|type=mRNA|length=1609bp|location=Sequence derived from alignment at A01:518538..521428+ (Brassica rapa chifu)|Notes=Excludes all bases but those of type(s): exon.  
AGAGAGAGAGGCAGAGAGGTTGGTGAGAATGGCGATGGCTATGGCTCTTC
GGAGGCTTTCTTCTTCAGTTGACAAACCTATTCGTCCTCTTATCAGATCA
TCTTCATGCTACATGTCTTCTTTGCCAAGTGAAGCTGTTGATGACAAGGA
GAGATCTCGTGTCACTTGGCCAAAACAGCTTAACGCATCTTTGGAGGAAG
TTGATCCTGAGATTGCTGACATCATTGAGCATGAGAAAGCTAGACAATGG
AAGGGACTTGAACTCATTCCATCTGAGAATTTCACATCTGTCTCGGTGAT
GCAAGCTGTTGGCTCTGTGATGACTAACAAGTACAGTGAAGGGTACCCTG
GTGCTAGATACTATGGAGGAAATGAGTTCATAGACATGGCGGAAACCTTG
TGCCAGAAGCGTGCTCTTGAAGCTTTCCGGTTAGACCCTGAGAAGTGGGG
AGTGAATGTGCAACCTTTGTCTGGATCACCTGCCAACTTCCATGTGTACA
CTGCATTGTTGAAGCCTCATGAGAGAATCATGGCACTTGATCTTCCTCAT
GGTGGTCATCTTTCTCATGGTTACCAGACTGATACCAAGAAGATATCTGC
TGTGTCTATCTTTTTTGAAACTATGCCCTACCGCTTGGACGAGAGCACTG
GCTTTATCGACTACGACCAGATGGAGAAGAGTGCTACTCTTTTCAGGCCA
AAACTGATTGTTGCTGGTGCAAGTGCTTATGCTCGATTGTAATCCCTTCA
CCGTTCGAGTATGCAGATGTTGTAACCACCACAACTCACAAGTCCCTACG
TGGACCTCGCGGAGCCATGATTTTCTACAGAAAGGGTGTTAAGGAAATTA
ACAAACAAGGCAAAGAGGTTTTGTATGATTTTGAAGACAAGATCAATCAA
GCTGTCTTCCCTGGTCTTCAAGGCGGTCCACATAACCACACTATTACAGG
ACTAGCTGTTGCTTTAAAGCAGGCAACTACTTCAGAGTACAAAGCATACC
AAGAGCAAGTCCTCAGTAACTCTGCAAAGTTTGCTCAGACTCTGATGGAG
AAAGGTTATGAACTTGTTTCTGGTGGAACTGACAACCATCTGGTTCTAGT
GAACCTGAAGCCCAAGGGAATTGATGGATCTAGAGTTGAGAAAGTGTTGG
AAGCTGTTCACATTGCATCCAACAAAAACACTGTTCCTGGAGATGTTTCT
GCCATGGTTCCTGGTGGAATCAGAATGGGTACACCTGCTCTCACTTCCAG
AGGTTTTGTTGAGGAAGACTTTGCCAAAGTAGCTGAATACTTTGACAAAG
CTGTGAAGTTGGCTCTCAAAGTCAAATCCGAAGCTCAAGGAACCAAGCTG
AAAGATTTTGTGTCAGCAATGGAATCATCTTCAGCCATTCAATCAGAGAT
TGCCAAGCTGCGCCACGACGTGGAGGAGTTCGCTAAGCAGTTCCCAACTA
TTGGGTTTGAGAAAGAAACCATGAAGTACAAGAACTGAATATGTCTTTAT
CCCTACAAACAAGTCTTTTATTATGATGATGCTTTGAACTTCCATGTAAT
GTATAGATAATGATGCATGTACTCTATCTTATGGTATGTGAAAAATAATT
GAACTTTCA

protein sequence of BraA01g001070.3.5C.9

>BraA01g001070.3.5C.9-P1 ID=BraA01g001070.3.5C.9-P1|Name=BraA01g001070.3.5C.9|organism=Brassica rapa chifu|type=polypeptide|length=236bp
MAMALRRLSSSVDKPIRPLIRSSSCYMSSLPSEAVDDKERSRVTWPKQLN
ASLEEVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKY
SEGYPGARYYGGNEFIDMAETLCQKRALEAFRLDPEKWGVNVQPLSGSPA
NFHVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR
LDESTGFIDYDQMEKSATLFRPKLIVAGASAYARL.

mRNA from alignment at A01:518538..521428+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>BraA01g001070.3.5C.9 ID=BraA01g001070.3.5C.9|Name=BraA01g001070.3.5C.9|organism=Brassica rapa chifu|type=mRNA|length=2891bp|location=Sequence derived from alignment at A01:518538..521428+ (Brassica rapa chifu)
AGAGAGAGAGGCAGAGAGGTTGGTGAGAATGGCGATGGCTATGGCTCTTC
GGAGGCTTTCTTCTTCAGTTGACAAACCTATTCGTCCTCTTATCAGATCA
TCTTCATGCTACATGGTAACTCCCCCATGAATCCTATCAGGACAGAATCT
TGTGTTTCTGATTTGTGGTTGTTGTTTCTTACAGTCTTCTTTGCCAAGTG
AAGCTGTTGATGACAAGGAGAGATCTCGTGTCACTGTAAGCTTTTGTTTC
TTCCTTGCTCTCCTTAAAAACCCTTTTGTCTTAATCTCCAGCGGTTGATT
AGTTTCCTTGCGGCTCAAGCAATGATTTAGGTTAATGAAGTTCTGCCTCT
TTTTTGTTCCTTGCAGTGGCCAAAACAGCTTAACGCATCTTTGGAGGAAG
TTGATCCTGAGATTGCTGACATCATTGAGCATGAGAAAGCTAGACAATGG
AAGGTTATTTATTAGTCTCTCTTAATATCTTGTTCCTTCTGTAACTTGGA
CTGATCTTTGTAATGATTAATGTTATCAAAGGGACTTGAACTCATTCCAT
CTGAGAATTTCACATCTGTCTCGGTGATGCAAGCTGTTGGCTCTGTGATG
ACTAACAAGTACAGTGAAGGGTACCCTGGTGCTAGATACTATGGAGGAAA
TGAGTATGTTCAGACTTCTTTTTTTTTTTTTTTTTTGCAATCAGAGTCAG
AAATTCAGTTTCAGATCGTAGACATGGTTGTTTGACCAATCTTGACTTCT
TTTTGAAGGTTCATAGACATGGCGGAAACCTTGTGCCAGAAGCGTGCTCT
TGAAGCTTTCCGGTTAGACCCTGAGAAGTGGGGAGGTAATTAGACCAACT
CATTTCTTGTATTTGACTTGTGTATGATCCTTTGATGGCTTATTCTGAGT
CATGTTGATTATACAGTGAATGTGCAACCTTTGTCTGGATCACCTGCCAA
CTTCCATGTGTACACTGCATTGTTGAAGCCTCATGAGAGAATCATGGCAC
TTGATCTTCCTCATGGTGGTCATCTTTCTCATGGTTACCAGGTACCTTCA
TTAATTATTATCCTGTTAATGAAACTGATTATGTGTTCTGATTTATAAGA
GTTTGTTTGTTTTCTCTTTGTATCTCATGCAGACTGATACCAAGAAGATA
TCTGCTGTGTCTATCTTTTTTGAAACTATGCCCTACCGCTTGGACGAGAG
CACTGGCTTTATCGACTACGACCAGGTTCATTATTATTCAATTAAGTAAC
AACACTACTTCATATTGTTTAATCATACAGCTTATTAATCTTTGATCTGC
AGATGGAGAAGAGTGCTACTCTTTTCAGGCCAAAACTGATTGTTGCTGGT
GCAAGTGCTTATGCTCGATTGTATGACTATGCCCGCATCCGCAAGGTAGT
ATTATTCAATATCATATTCTATTGTAAATCAAGAGTTGAGTTCTGAGTCC
AATTAACTCTGTTGGCAGGTGTGCAACAAGCAAAAAGCTGTGATGCTAGC
AGATATGGCACACATAAGCGGTTTGGTAGCAGCTGGTGTAATCCCTTCAC
CGTTCGAGTATGCAGATGTTGTAACCACCACAACTCACAAGTCCCTACGT
GGACCTCGCGGAGCCATGATTTTCTACAGAAAGGGTGTTAAGGAAATTAA
CAAACAAGGCAAAGAGGTAAATAAACAAAATACTAAAATGTTTTGTGAGA
TTTATCTATACTCTTTATAATATCTCATTCATTTGGTTGTTTCTTTGAAA
GGTTTTGTATGATTTTGAAGACAAGATCAATCAAGCTGTCTTCCCTGGTC
TTCAAGGCGGTCCACATAACCACACTATTACAGGACTAGCTGTTGCTTTA
AAGCAGGTACATTGAATGGAACTAAAATTTCTTATTGGACTTGCAGTTTC
TTTAATGATTTTTTTTTTAAATTGCAGGCAACTACTTCAGAGTACAAAGC
ATACCAAGAGCAAGTCCTCAGTAACTCTGCAAAGTTTGCTCAGGTGAATA
AGAAAAAAAGAACCATATATGTACATTATTTACTGTTGACTTTATCTATA
GAATGTCTACTTATTTTTTGATGCAGACTCTGATGGAGAAAGGTTATGAA
CTTGTTTCTGGTGGAACTGACAACCATCTGGTTCTAGTGAACCTGAAGCC
CAAGGTCACTTGATCTTTATTTGTTATATTATCTTCTTACTTCAAAAATC
CTTTTTATTTATTTATCTGTTTTTTTTTTTGGTTTGCAGGGAATTGATGG
ATCTAGAGTTGAGAAAGTGTTGGAAGCTGTTCACATTGCATCCAACAAAA
ACACTGTTCCTGGAGATGTTTCTGCCATGGTTCCTGGTGGAATCAGAATG
GGTAAGAATCATTACTTATGCTTTTCCTTTGAAACCTCACCCTGAAATTT
CTCTGCCATTTTAGGTACACCTGCTCTCACTTCCAGAGGTTTTGTTGAGG
AAGACTTTGCCAAAGTAGCTGAATACTTTGACAAAGCTGTGAAGTTGGCT
CTCAAAGTCAAATCCGAAGCTCAAGGTTGATTCATTTCTCTGATCAAATG
ATTCTTTATGTTTTTCTGTTCCATATAAGCAAATGCTAGATAACTCGTTT
GTTGTGTTATAAAAAATACAGGAACCAAGCTGAAAGATTTTGTGTCAGCA
ATGGAATCATCTTCAGCCATTCAATCAGAGATTGCCAAGCTGCGCCACGA
CGTGGAGGAGTTCGCTAAGCAGTTCCCAACTATTGGGTTTGAGAAAGAAA
CCATGAAGTACAAGAACTGAATATGTCTTTATCCCTACAAACAAGTCTTT
TATTATGATGATGCTTTGAACTTCCATGTAATGTATAGATAATGATGCAT
GTACTCTATCTTATGGTATGTGAAAAATAATTGAACTTTCA

Coding sequence (CDS) from alignment at A01:518538..521428+

>BraA01g001070.3.5C.9 ID=BraA01g001070.3.5C.9|Name=BraA01g001070.3.5C.9|organism=Brassica rapa chifu|type=CDS|length=708bp|location=Sequence derived from alignment at A01:518538..521428+ (Brassica rapa chifu)
ATGGCTATGGCTCTTCGGAGGCTTTCTTCTTCAGTTGACAAACCTATTCG
TCCTCTTATCAGATCATCTTCATGCTACATGTCTTCTTTGCCAAGTGAAG
CTGTTGATGACAAGGAGAGATCTCGTGTCACTTGGCCAAAACAGCTTAAC
GCATCTTTGGAGGAAGTTGATCCTGAGATTGCTGACATCATTGAGCATGA
GAAAGCTAGACAATGGAAGGGACTTGAACTCATTCCATCTGAGAATTTCA
CATCTGTCTCGGTGATGCAAGCTGTTGGCTCTGTGATGACTAACAAGTAC
AGTGAAGGGTACCCTGGTGCTAGATACTATGGAGGAAATGAGTTCATAGA
CATGGCGGAAACCTTGTGCCAGAAGCGTGCTCTTGAAGCTTTCCGGTTAG
ACCCTGAGAAGTGGGGAGTGAATGTGCAACCTTTGTCTGGATCACCTGCC
AACTTCCATGTGTACACTGCATTGTTGAAGCCTCATGAGAGAATCATGGC
ACTTGATCTTCCTCATGGTGGTCATCTTTCTCATGGTTACCAGACTGATA
CCAAGAAGATATCTGCTGTGTCTATCTTTTTTGAAACTATGCCCTACCGC
TTGGACGAGAGCACTGGCTTTATCGACTACGACCAGATGGAGAAGAGTGC
TACTCTTTTCAGGCCAAAACTGATTGTTGCTGGTGCAAGTGCTTATGCTC
GATTGTAA