BraA01g001070.3.5C.9 (mRNA) Brassica rapa chifu

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBraA01g001070.3.5C.9
Unique NameBraA01g001070.3.5C.9
TypemRNA
OrganismBrassica rapa chifu (field mustard)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A01contigA01:518538..521428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica rapa chifu OGS3.52021-11-28
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BraA01g001070.3.5CBraA01g001070.3.5CBrassica rapa chifugeneA01 517237..521474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BraA01g001070.3.5C.9BraA01g001070.3.5C.9-P1Brassica rapa chifupolypeptideA01 518572..520078 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BraA01g001070.3.5C.9.utr5p1BraA01g001070.3.5C.9.utr5p1Brassica rapa chifufive_prime_UTRA01 518538..518571 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BraA01g001070.3.5C.9.exon1BraA01g001070.3.5C.9.exon1Brassica rapa chifuexonA01 518538..518652 +
BraA01g001070.3.5C.9.exon2BraA01g001070.3.5C.9.exon2Brassica rapa chifuexonA01 518722..518772 +
BraA01g001070.3.5C.9.exon3BraA01g001070.3.5C.9.exon3Brassica rapa chifuexonA01 518904..518990 +
BraA01g001070.3.5C.9.exon4BraA01g001070.3.5C.9.exon4Brassica rapa chifuexonA01 519069..519190 +
BraA01g001070.3.5C.9.exon5BraA01g001070.3.5C.9.exon5Brassica rapa chifuexonA01 519296..519372 +
BraA01g001070.3.5C.9.exon6BraA01g001070.3.5C.9.exon6Brassica rapa chifuexonA01 519454..519578 +
BraA01g001070.3.5C.9.exon7BraA01g001070.3.5C.9.exon7Brassica rapa chifuexonA01 519670..519762 +
BraA01g001070.3.5C.9.exon8BraA01g001070.3.5C.9.exon8Brassica rapa chifuexonA01 519840..519907 +
BraA01g001070.3.5C.9.exon9BraA01g001070.3.5C.9.exon9Brassica rapa chifuexonA01 520075..520203 +
BraA01g001070.3.5C.9.exon10BraA01g001070.3.5C.9.exon10Brassica rapa chifuexonA01 520289..520393 +
BraA01g001070.3.5C.9.exon11BraA01g001070.3.5C.9.exon11Brassica rapa chifuexonA01 520465..520530 +
BraA01g001070.3.5C.9.exon12BraA01g001070.3.5C.9.exon12Brassica rapa chifuexonA01 520614..520691 +
BraA01g001070.3.5C.9.exon13BraA01g001070.3.5C.9.exon13Brassica rapa chifuexonA01 520777..520888 +
BraA01g001070.3.5C.9.exon14BraA01g001070.3.5C.9.exon14Brassica rapa chifuexonA01 520952..521062 +
BraA01g001070.3.5C.9.exon15BraA01g001070.3.5C.9.exon15Brassica rapa chifuexonA01 521159..521428 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
cds.BraA01g001070.3.5C.9cds.BraA01g001070.3.5C.9Brassica rapa chifuCDSA01 518572..518652 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BraA01g001070.3.5C.9.utr3p1BraA01g001070.3.5C.9.utr3p1Brassica rapa chifuthree_prime_UTRA01 520079..520203 +
BraA01g001070.3.5C.9.utr3p2BraA01g001070.3.5C.9.utr3p2Brassica rapa chifuthree_prime_UTRA01 520289..520393 +
BraA01g001070.3.5C.9.utr3p3BraA01g001070.3.5C.9.utr3p3Brassica rapa chifuthree_prime_UTRA01 520465..520530 +
BraA01g001070.3.5C.9.utr3p4BraA01g001070.3.5C.9.utr3p4Brassica rapa chifuthree_prime_UTRA01 520614..520691 +
BraA01g001070.3.5C.9.utr3p5BraA01g001070.3.5C.9.utr3p5Brassica rapa chifuthree_prime_UTRA01 520777..520888 +
BraA01g001070.3.5C.9.utr3p6BraA01g001070.3.5C.9.utr3p6Brassica rapa chifuthree_prime_UTRA01 520952..521062 +
BraA01g001070.3.5C.9.utr3p7BraA01g001070.3.5C.9.utr3p7Brassica rapa chifuthree_prime_UTRA01 521159..521428 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BraA01g001070.3.5C.9 ID=BraA01g001070.3.5C.9|Name=BraA01g001070.3.5C.9|organism=Brassica rapa chifu|type=mRNA|length=1609bp|location=Sequence derived from alignment at A01:518538..521428+ (Brassica rapa chifu)|Notes=Excludes all bases but those of type(s): exon.  
AGAGAGAGAGGCAGAGAGGTTGGTGAGAATGGCGATGGCTATGGCTCTTC
GGAGGCTTTCTTCTTCAGTTGACAAACCTATTCGTCCTCTTATCAGATCA
TCTTCATGCTACATGTCTTCTTTGCCAAGTGAAGCTGTTGATGACAAGGA
GAGATCTCGTGTCACTTGGCCAAAACAGCTTAACGCATCTTTGGAGGAAG
TTGATCCTGAGATTGCTGACATCATTGAGCATGAGAAAGCTAGACAATGG
AAGGGACTTGAACTCATTCCATCTGAGAATTTCACATCTGTCTCGGTGAT
GCAAGCTGTTGGCTCTGTGATGACTAACAAGTACAGTGAAGGGTACCCTG
GTGCTAGATACTATGGAGGAAATGAGTTCATAGACATGGCGGAAACCTTG
TGCCAGAAGCGTGCTCTTGAAGCTTTCCGGTTAGACCCTGAGAAGTGGGG
AGTGAATGTGCAACCTTTGTCTGGATCACCTGCCAACTTCCATGTGTACA
CTGCATTGTTGAAGCCTCATGAGAGAATCATGGCACTTGATCTTCCTCAT
GGTGGTCATCTTTCTCATGGTTACCAGACTGATACCAAGAAGATATCTGC
TGTGTCTATCTTTTTTGAAACTATGCCCTACCGCTTGGACGAGAGCACTG
GCTTTATCGACTACGACCAGATGGAGAAGAGTGCTACTCTTTTCAGGCCA
AAACTGATTGTTGCTGGTGCAAGTGCTTATGCTCGATTGTAATCCCTTCA
CCGTTCGAGTATGCAGATGTTGTAACCACCACAACTCACAAGTCCCTACG
TGGACCTCGCGGAGCCATGATTTTCTACAGAAAGGGTGTTAAGGAAATTA
ACAAACAAGGCAAAGAGGTTTTGTATGATTTTGAAGACAAGATCAATCAA
GCTGTCTTCCCTGGTCTTCAAGGCGGTCCACATAACCACACTATTACAGG
ACTAGCTGTTGCTTTAAAGCAGGCAACTACTTCAGAGTACAAAGCATACC
AAGAGCAAGTCCTCAGTAACTCTGCAAAGTTTGCTCAGACTCTGATGGAG
AAAGGTTATGAACTTGTTTCTGGTGGAACTGACAACCATCTGGTTCTAGT
GAACCTGAAGCCCAAGGGAATTGATGGATCTAGAGTTGAGAAAGTGTTGG
AAGCTGTTCACATTGCATCCAACAAAAACACTGTTCCTGGAGATGTTTCT
GCCATGGTTCCTGGTGGAATCAGAATGGGTACACCTGCTCTCACTTCCAG
AGGTTTTGTTGAGGAAGACTTTGCCAAAGTAGCTGAATACTTTGACAAAG
CTGTGAAGTTGGCTCTCAAAGTCAAATCCGAAGCTCAAGGAACCAAGCTG
AAAGATTTTGTGTCAGCAATGGAATCATCTTCAGCCATTCAATCAGAGAT
TGCCAAGCTGCGCCACGACGTGGAGGAGTTCGCTAAGCAGTTCCCAACTA
TTGGGTTTGAGAAAGAAACCATGAAGTACAAGAACTGAATATGTCTTTAT
CCCTACAAACAAGTCTTTTATTATGATGATGCTTTGAACTTCCATGTAAT
GTATAGATAATGATGCATGTACTCTATCTTATGGTATGTGAAAAATAATT
GAACTTTCA
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protein sequence of BraA01g001070.3.5C.9

>BraA01g001070.3.5C.9-P1 ID=BraA01g001070.3.5C.9-P1|Name=BraA01g001070.3.5C.9|organism=Brassica rapa chifu|type=polypeptide|length=236bp
MAMALRRLSSSVDKPIRPLIRSSSCYMSSLPSEAVDDKERSRVTWPKQLN
ASLEEVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKY
SEGYPGARYYGGNEFIDMAETLCQKRALEAFRLDPEKWGVNVQPLSGSPA
NFHVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYR
LDESTGFIDYDQMEKSATLFRPKLIVAGASAYARL.
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mRNA from alignment at A01:518538..521428+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>BraA01g001070.3.5C.9 ID=BraA01g001070.3.5C.9|Name=BraA01g001070.3.5C.9|organism=Brassica rapa chifu|type=mRNA|length=2891bp|location=Sequence derived from alignment at A01:518538..521428+ (Brassica rapa chifu)
AGAGAGAGAGGCAGAGAGGTTGGTGAGAATGGCGATGGCTATGGCTCTTC
GGAGGCTTTCTTCTTCAGTTGACAAACCTATTCGTCCTCTTATCAGATCA
TCTTCATGCTACATGGTAACTCCCCCATGAATCCTATCAGGACAGAATCT
TGTGTTTCTGATTTGTGGTTGTTGTTTCTTACAGTCTTCTTTGCCAAGTG
AAGCTGTTGATGACAAGGAGAGATCTCGTGTCACTGTAAGCTTTTGTTTC
TTCCTTGCTCTCCTTAAAAACCCTTTTGTCTTAATCTCCAGCGGTTGATT
AGTTTCCTTGCGGCTCAAGCAATGATTTAGGTTAATGAAGTTCTGCCTCT
TTTTTGTTCCTTGCAGTGGCCAAAACAGCTTAACGCATCTTTGGAGGAAG
TTGATCCTGAGATTGCTGACATCATTGAGCATGAGAAAGCTAGACAATGG
AAGGTTATTTATTAGTCTCTCTTAATATCTTGTTCCTTCTGTAACTTGGA
CTGATCTTTGTAATGATTAATGTTATCAAAGGGACTTGAACTCATTCCAT
CTGAGAATTTCACATCTGTCTCGGTGATGCAAGCTGTTGGCTCTGTGATG
ACTAACAAGTACAGTGAAGGGTACCCTGGTGCTAGATACTATGGAGGAAA
TGAGTATGTTCAGACTTCTTTTTTTTTTTTTTTTTTGCAATCAGAGTCAG
AAATTCAGTTTCAGATCGTAGACATGGTTGTTTGACCAATCTTGACTTCT
TTTTGAAGGTTCATAGACATGGCGGAAACCTTGTGCCAGAAGCGTGCTCT
TGAAGCTTTCCGGTTAGACCCTGAGAAGTGGGGAGGTAATTAGACCAACT
CATTTCTTGTATTTGACTTGTGTATGATCCTTTGATGGCTTATTCTGAGT
CATGTTGATTATACAGTGAATGTGCAACCTTTGTCTGGATCACCTGCCAA
CTTCCATGTGTACACTGCATTGTTGAAGCCTCATGAGAGAATCATGGCAC
TTGATCTTCCTCATGGTGGTCATCTTTCTCATGGTTACCAGGTACCTTCA
TTAATTATTATCCTGTTAATGAAACTGATTATGTGTTCTGATTTATAAGA
GTTTGTTTGTTTTCTCTTTGTATCTCATGCAGACTGATACCAAGAAGATA
TCTGCTGTGTCTATCTTTTTTGAAACTATGCCCTACCGCTTGGACGAGAG
CACTGGCTTTATCGACTACGACCAGGTTCATTATTATTCAATTAAGTAAC
AACACTACTTCATATTGTTTAATCATACAGCTTATTAATCTTTGATCTGC
AGATGGAGAAGAGTGCTACTCTTTTCAGGCCAAAACTGATTGTTGCTGGT
GCAAGTGCTTATGCTCGATTGTATGACTATGCCCGCATCCGCAAGGTAGT
ATTATTCAATATCATATTCTATTGTAAATCAAGAGTTGAGTTCTGAGTCC
AATTAACTCTGTTGGCAGGTGTGCAACAAGCAAAAAGCTGTGATGCTAGC
AGATATGGCACACATAAGCGGTTTGGTAGCAGCTGGTGTAATCCCTTCAC
CGTTCGAGTATGCAGATGTTGTAACCACCACAACTCACAAGTCCCTACGT
GGACCTCGCGGAGCCATGATTTTCTACAGAAAGGGTGTTAAGGAAATTAA
CAAACAAGGCAAAGAGGTAAATAAACAAAATACTAAAATGTTTTGTGAGA
TTTATCTATACTCTTTATAATATCTCATTCATTTGGTTGTTTCTTTGAAA
GGTTTTGTATGATTTTGAAGACAAGATCAATCAAGCTGTCTTCCCTGGTC
TTCAAGGCGGTCCACATAACCACACTATTACAGGACTAGCTGTTGCTTTA
AAGCAGGTACATTGAATGGAACTAAAATTTCTTATTGGACTTGCAGTTTC
TTTAATGATTTTTTTTTTAAATTGCAGGCAACTACTTCAGAGTACAAAGC
ATACCAAGAGCAAGTCCTCAGTAACTCTGCAAAGTTTGCTCAGGTGAATA
AGAAAAAAAGAACCATATATGTACATTATTTACTGTTGACTTTATCTATA
GAATGTCTACTTATTTTTTGATGCAGACTCTGATGGAGAAAGGTTATGAA
CTTGTTTCTGGTGGAACTGACAACCATCTGGTTCTAGTGAACCTGAAGCC
CAAGGTCACTTGATCTTTATTTGTTATATTATCTTCTTACTTCAAAAATC
CTTTTTATTTATTTATCTGTTTTTTTTTTTGGTTTGCAGGGAATTGATGG
ATCTAGAGTTGAGAAAGTGTTGGAAGCTGTTCACATTGCATCCAACAAAA
ACACTGTTCCTGGAGATGTTTCTGCCATGGTTCCTGGTGGAATCAGAATG
GGTAAGAATCATTACTTATGCTTTTCCTTTGAAACCTCACCCTGAAATTT
CTCTGCCATTTTAGGTACACCTGCTCTCACTTCCAGAGGTTTTGTTGAGG
AAGACTTTGCCAAAGTAGCTGAATACTTTGACAAAGCTGTGAAGTTGGCT
CTCAAAGTCAAATCCGAAGCTCAAGGTTGATTCATTTCTCTGATCAAATG
ATTCTTTATGTTTTTCTGTTCCATATAAGCAAATGCTAGATAACTCGTTT
GTTGTGTTATAAAAAATACAGGAACCAAGCTGAAAGATTTTGTGTCAGCA
ATGGAATCATCTTCAGCCATTCAATCAGAGATTGCCAAGCTGCGCCACGA
CGTGGAGGAGTTCGCTAAGCAGTTCCCAACTATTGGGTTTGAGAAAGAAA
CCATGAAGTACAAGAACTGAATATGTCTTTATCCCTACAAACAAGTCTTT
TATTATGATGATGCTTTGAACTTCCATGTAATGTATAGATAATGATGCAT
GTACTCTATCTTATGGTATGTGAAAAATAATTGAACTTTCA
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Coding sequence (CDS) from alignment at A01:518538..521428+

>BraA01g001070.3.5C.9 ID=BraA01g001070.3.5C.9|Name=BraA01g001070.3.5C.9|organism=Brassica rapa chifu|type=CDS|length=708bp|location=Sequence derived from alignment at A01:518538..521428+ (Brassica rapa chifu)
ATGGCTATGGCTCTTCGGAGGCTTTCTTCTTCAGTTGACAAACCTATTCG
TCCTCTTATCAGATCATCTTCATGCTACATGTCTTCTTTGCCAAGTGAAG
CTGTTGATGACAAGGAGAGATCTCGTGTCACTTGGCCAAAACAGCTTAAC
GCATCTTTGGAGGAAGTTGATCCTGAGATTGCTGACATCATTGAGCATGA
GAAAGCTAGACAATGGAAGGGACTTGAACTCATTCCATCTGAGAATTTCA
CATCTGTCTCGGTGATGCAAGCTGTTGGCTCTGTGATGACTAACAAGTAC
AGTGAAGGGTACCCTGGTGCTAGATACTATGGAGGAAATGAGTTCATAGA
CATGGCGGAAACCTTGTGCCAGAAGCGTGCTCTTGAAGCTTTCCGGTTAG
ACCCTGAGAAGTGGGGAGTGAATGTGCAACCTTTGTCTGGATCACCTGCC
AACTTCCATGTGTACACTGCATTGTTGAAGCCTCATGAGAGAATCATGGC
ACTTGATCTTCCTCATGGTGGTCATCTTTCTCATGGTTACCAGACTGATA
CCAAGAAGATATCTGCTGTGTCTATCTTTTTTGAAACTATGCCCTACCGC
TTGGACGAGAGCACTGGCTTTATCGACTACGACCAGATGGAGAAGAGTGC
TACTCTTTTCAGGCCAAAACTGATTGTTGCTGGTGCAAGTGCTTATGCTC
GATTGTAA
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