BolC1t00451H-R (mRNA) Brassica oleracea HDEM

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBolC1t00451H-R
Unique NameBolC1t00451H-R
TypemRNA
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C1contigC1:2445384..2446154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica oleracea HDEM OGS1.02018-11-02
Properties
Property NameValue
Stop1
Start1
Cds size204
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC1t00451HBolC1t00451HBrassica oleracea HDEMgeneC1 2445384..2446154 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00451H-RBolC1t00451H-R-PBrassica oleracea HDEMpolypeptideC1 2445384..2446154 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00451H_exon1BolC1t00451H_exon1Brassica oleracea HDEMexonC1 2445384..2445494 -
BolC1t00451H_exon2BolC1t00451H_exon2Brassica oleracea HDEMexonC1 2445672..2445710 -
BolC1t00451H_exon3BolC1t00451H_exon3Brassica oleracea HDEMexonC1 2446101..2446154 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00451HBolC1t00451HBrassica oleracea HDEMCDSC1 2445384..2445494 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BolC1t00451H-R ID=BolC1t00451H-R|Name=BolC1t00451H-R|organism=Brassica oleracea HDEM|type=mRNA|length=204bp|location=Sequence derived from alignment at C1:2445384..2446154- (Brassica oleracea HDEM)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTAAGAATCCAGCGAAATCACAACAAAATCTCCAACTGAATCGAGC
ACCGCGGTACAAGAATCCAGATCTTTGTTCGACAAGTTCGAGAACTGCAG
AATTCCTATGTCTTGGGGATGTTGCCAGTATTGAAACAACAAATGGATGG
TGCTATGGCTCATGCCCCAAGTTCTCATCATGCACGTGTGCCGGCCTGCC
ATGA
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protein sequence of BolC1t00451H-R

>BolC1t00451H-R-P ID=BolC1t00451H-R-P|Name=BolC1t00451H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=68bp
MAKNPAKSQQNLQLNRAPRYKNPDLCSTSSRTAEFLCLGDVASIETTNGW
CYGSCPKFSSCTCAGLP.
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mRNA from alignment at C1:2445384..2446154-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>BolC1t00451H-R ID=BolC1t00451H-R|Name=BolC1t00451H-R|organism=Brassica oleracea HDEM|type=mRNA|length=771bp|location=Sequence derived from alignment at C1:2445384..2446154- (Brassica oleracea HDEM)
ATGGCTAAGAATCCAGCGAAATCACAACAAAATCTCCAACTGAATCGAGC
ACCGGTTCCATGGATAAGAAAAAAGGGGGTTGCTTGGCTCCATCTACATC
CCTGATGAGAAGGTATTGTTCCAACTAGCATCTTATATTTGATCTTAATT
TTGTTTTTTAAATCTTCTAACTTTGATCATGAGGATTAGGTGATCATGGA
TTTATTCTGCTGCTCTCGCGCCACTCACTCACCGATCCATCTTTTCTGAG
ACGGTTCCATAAAGGTTGTTTGAATCTGAAAATGATTTCTTTGTAGTTCT
AAGAGAGAACCTTCTTGAACTAAGAATTGAAATAATGTATATAGTCTTAA
AAAAAAAATCAATCCTTTCTTGGTGAAGGACTTATTATATATGTATCCTT
GCAGAGTGTTTGAGAATCGTTGCTTTATATCGAAAGCATTTTAGCGGTAC
AAGAATCCAGATCTTTGTTCGACAAGTTCGAGAGTATCCTTTTTCTCATT
TAGTTGTTTCATAGTGTTTAATCCATGGTAGAGTTTTGACATGTTTGCAT
CTTTATTAGTTTCAGGTAAATCGAGTGGAGATTTGATTTGTGTTTAGTTT
GGTTTTCTTGACTAGCTCTGTTGTATTAAATCTGCCTTTAACTAACTTAA
ACATTTATAGACTGCAGAATTCCTATGTCTTGGGGATGTTGCCAGTATTG
AAACAACAAATGGATGGTGCTATGGCTCATGCCCCAAGTTCTCATCATGC
ACGTGTGCCGGCCTGCCATGA
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Coding sequence (CDS) from alignment at C1:2445384..2446154-

>BolC1t00451H-R ID=BolC1t00451H-R|Name=BolC1t00451H-R|organism=Brassica oleracea HDEM|type=CDS|length=204bp|location=Sequence derived from alignment at C1:2445384..2446154- (Brassica oleracea HDEM)
ATGGCTAAGAATCCAGCGAAATCACAACAAAATCTCCAACTGAATCGAGC
ACCGCGGTACAAGAATCCAGATCTTTGTTCGACAAGTTCGAGAACTGCAG
AATTCCTATGTCTTGGGGATGTTGCCAGTATTGAAACAACAAATGGATGG
TGCTATGGCTCATGCCCCAAGTTCTCATCATGCACGTGTGCCGGCCTGCC
ATGA
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