BolC1t00270H-R (mRNA) Brassica oleracea HDEM

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBolC1t00270H-R
Unique NameBolC1t00270H-R
TypemRNA
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C1contigC1:1497637..1499079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica oleracea HDEM OGS1.02018-11-02
Properties
Property NameValue
Stop0
Start1
Cds size1110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC1t00270HBolC1t00270HBrassica oleracea HDEMgeneC1 1497637..1499079 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00270H-RBolC1t00270H-R-PBrassica oleracea HDEMpolypeptideC1 1497637..1499079 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00270H_exon1BolC1t00270H_exon1Brassica oleracea HDEMexonC1 1497637..1497895 +
BolC1t00270H_exon2BolC1t00270H_exon2Brassica oleracea HDEMexonC1 1497963..1498193 +
BolC1t00270H_exon3BolC1t00270H_exon3Brassica oleracea HDEMexonC1 1498300..1498703 +
BolC1t00270H_exon4BolC1t00270H_exon4Brassica oleracea HDEMexonC1 1498778..1498894 +
BolC1t00270H_exon5BolC1t00270H_exon5Brassica oleracea HDEMexonC1 1498981..1499079 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00270HBolC1t00270HBrassica oleracea HDEMCDSC1 1497637..1497895 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BolC1t00270H-R ID=BolC1t00270H-R|Name=BolC1t00270H-R|organism=Brassica oleracea HDEM|type=mRNA|length=1110bp|location=Sequence derived from alignment at C1:1497637..1499079+ (Brassica oleracea HDEM)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAATGTTGAAACTCAACACCCCCACTTTCCCAAATTTAGCGTCATC
TCTGTTCCCAAATTCGAACCCAAGAGGACCCAGCGAGATTCGATTCTCCA
ACAGATCAAATTCGAACCCAAGAGGACCCAGCCAGATTCGATTCTCTAAC
AGATGGGGCAAGGCTAACGCCGATCTCCTCTCTCTCTCTCTTTTGGATCA
ACGTTGCAGAAGGGATCAAATTCGTTGTTGCGGGATGGCAGGAGGAGGAG
GAGGAGGAGGTGATCATCATCATGTGGGAGTGTGGTGGGACCTGAACACG
TGTCCGGTTCCGGCTGGTGTAGACCCTCGTTGTGTCCGTCCGTGTATAGA
ATCTGCCTTGGAGAAGCTGTTTGGTCGTCGTTCTGCAGTCAGCATCTATA
TCTATGCCATAGGAAACCTAGAATTCATCTCTACTGACCTCTTGCAAAAC
ATCTCTTCCTCCGGAATCATTGTTACTCATGCCCCCTGCGGTATGCACGA
CTTACATGATTTTCTTATCGACTGGTCTGCGGATGAGCTTAAAAACCCAC
ATCCTCCTGGTTACGTAATGATCATCTCGAGTGATTATAGACTGCTTTAC
CCTAAGCGTTTTCGGCTTTTTGGATTCACTACTTTTGTTGCATATCCAAA
AGGTGTTCGCCTACTTGCCCATCTTACCCAGCTAAAATTTATTGGCCGAG
AGTTTGACGAAGTGTTTGCCAAAGAGTTTGTCTGGGAAACCTTATTGAGT
GATAATTTGGATGAAACTTTATTATTGAGTGACAACAACACATGTGATGA
GAAACCTCTCTGCATTTGCAACATATGCTGTTATGATTACGAAGTATGTG
ACGAATTCATCACTCATCTCAAGTGTGAAGAGCACAGAAACCAGTGGTCT
GAAATTGTGCACGACCGCAAGCTTAAATATTTTTGCCAAGTTTGCAATTA
TCCCGCCTATAGCCACTATAACCTCTTTCTCCATAACCAAAGTGAAGCAC
ATAATCGCAAGCTGGTTGAGAAACAGGCTCAAGAAGAGGAGGATTGCCAG
AGCAGGAAGACAAATCCAGAATTGGATCTCTTCTACGAGAGAAACAAGGA
GCAATCTCTT
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protein sequence of BolC1t00270H-R

>BolC1t00270H-R-P ID=BolC1t00270H-R-P|Name=BolC1t00270H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=370bp
MSMLKLNTPTFPNLASSLFPNSNPRGPSEIRFSNRSNSNPRGPSQIRFSN
RWGKANADLLSLSLLDQRCRRDQIRCCGMAGGGGGGGDHHHVGVWWDLNT
CPVPAGVDPRCVRPCIESALEKLFGRRSAVSIYIYAIGNLEFISTDLLQN
ISSSGIIVTHAPCGMHDLHDFLIDWSADELKNPHPPGYVMIISSDYRLLY
PKRFRLFGFTTFVAYPKGVRLLAHLTQLKFIGREFDEVFAKEFVWETLLS
DNLDETLLLSDNNTCDEKPLCICNICCYDYEVCDEFITHLKCEEHRNQWS
EIVHDRKLKYFCQVCNYPAYSHYNLFLHNQSEAHNRKLVEKQAQEEEDCQ
SRKTNPELDLFYERNKEQSL
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mRNA from alignment at C1:1497637..1499079+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BolC1t00270H-R ID=BolC1t00270H-R|Name=BolC1t00270H-R|organism=Brassica oleracea HDEM|type=mRNA|length=1443bp|location=Sequence derived from alignment at C1:1497637..1499079+ (Brassica oleracea HDEM)
ATGTCAATGTTGAAACTCAACACCCCCACTTTCCCAAATTTAGCGTCATC TCTGTTCCCAAATTCGAACCCAAGAGGACCCAGCGAGATTCGATTCTCCA ACAGATCAAATTCGAACCCAAGAGGACCCAGCCAGATTCGATTCTCTAAC AGATGGGGCAAGGCTAACGCCGATCTCCTCTCTCTCTCTCTTTTGGATCA ACGTTGCAGAAGGGATCAAATTCGTTGTTGCGGGATGGCAGGAGGAGGAG GAGGAGGAGGTCGGTAGTTATTGATTCAAATTTACTTGTGATTAGATTTT AAAATGGTGGTTGTGTTTGGTTTTAGGTGATCATCATCATGTGGGAGTGT GGTGGGACCTGAACACGTGTCCGGTTCCGGCTGGTGTAGACCCTCGTTGT GTCCGTCCGTGTATAGAATCTGCCTTGGAGAAGCTGTTTGGTCGTCGTTC TGCAGTCAGCATCTATATCTATGCCATAGGAAACCTAGAATTCATCTCTA CTGACCTCTTGCAAAACATCTCTTCCTCCGGAATCATTGTTACTCATGCC CCCTGCGGTAAAGTCAATCAAATCAATCCTAATCGATTTGTTTTGTTTAG TCTAATTAATTAGAGAGAGTTAGTAGTCTCATGATCTGATCTGGCCTCCT TCTCTACTCTTAGGTATGCACGACTTACATGATTTTCTTATCGACTGGTC TGCGGATGAGCTTAAAAACCCACATCCTCCTGGTTACGTAATGATCATCT CGAGTGATTATAGACTGCTTTACCCTAAGCGTTTTCGGCTTTTTGGATTC ACTACTTTTGTTGCATATCCAAAAGGTGTTCGCCTACTTGCCCATCTTAC CCAGCTAAAATTTATTGGCCGAGAGTTTGACGAAGTGTTTGCCAAAGAGT TTGTCTGGGAAACCTTATTGAGTGATAATTTGGATGAAACTTTATTATTG AGTGACAACAACACATGTGATGAGAAACCTCTCTGCATTTGCAACATATG CTGTTATGATTACGAAGTATGTGACGAATTCATCACTCATCTCAAGTGTG AAGAGCACAGAAACCAGGTAATTAAGCAAGCAGCATGCATCCTCAGCTTT TTTTTTATCATTTTTTTTCATGTATCTGTGTGTGTGTGCAGTGGTCTGAA ATTGTGCACGACCGCAAGCTTAAATATTTTTGCCAAGTTTGCAATTATCC CGCCTATAGCCACTATAACCTCTTTCTCCATAACCAAAGTGAAGCACATA ATCGCAAGGTAAGCGCAGCTTGTGATCATTATTATACAGTTTAACAACTC TCTGTATCGCTAAAATTTGATCCCCATTTTGGTTTGTTTTCAAGCTGGTT GAGAAACAGGCTCAAGAAGAGGAGGATTGCCAGAGCAGGAAGACAAATCC AGAATTGGATCTCTTCTACGAGAGAAACAAGGAGCAATCTCTT
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Coding sequence (CDS) from alignment at C1:1497637..1499079+

>BolC1t00270H-R ID=BolC1t00270H-R|Name=BolC1t00270H-R|organism=Brassica oleracea HDEM|type=CDS|length=1110bp|location=Sequence derived from alignment at C1:1497637..1499079+ (Brassica oleracea HDEM)
ATGTCAATGTTGAAACTCAACACCCCCACTTTCCCAAATTTAGCGTCATC
TCTGTTCCCAAATTCGAACCCAAGAGGACCCAGCGAGATTCGATTCTCCA
ACAGATCAAATTCGAACCCAAGAGGACCCAGCCAGATTCGATTCTCTAAC
AGATGGGGCAAGGCTAACGCCGATCTCCTCTCTCTCTCTCTTTTGGATCA
ACGTTGCAGAAGGGATCAAATTCGTTGTTGCGGGATGGCAGGAGGAGGAG
GAGGAGGAGGTGATCATCATCATGTGGGAGTGTGGTGGGACCTGAACACG
TGTCCGGTTCCGGCTGGTGTAGACCCTCGTTGTGTCCGTCCGTGTATAGA
ATCTGCCTTGGAGAAGCTGTTTGGTCGTCGTTCTGCAGTCAGCATCTATA
TCTATGCCATAGGAAACCTAGAATTCATCTCTACTGACCTCTTGCAAAAC
ATCTCTTCCTCCGGAATCATTGTTACTCATGCCCCCTGCGGTATGCACGA
CTTACATGATTTTCTTATCGACTGGTCTGCGGATGAGCTTAAAAACCCAC
ATCCTCCTGGTTACGTAATGATCATCTCGAGTGATTATAGACTGCTTTAC
CCTAAGCGTTTTCGGCTTTTTGGATTCACTACTTTTGTTGCATATCCAAA
AGGTGTTCGCCTACTTGCCCATCTTACCCAGCTAAAATTTATTGGCCGAG
AGTTTGACGAAGTGTTTGCCAAAGAGTTTGTCTGGGAAACCTTATTGAGT
GATAATTTGGATGAAACTTTATTATTGAGTGACAACAACACATGTGATGA
GAAACCTCTCTGCATTTGCAACATATGCTGTTATGATTACGAAGTATGTG
ACGAATTCATCACTCATCTCAAGTGTGAAGAGCACAGAAACCAGTGGTCT
GAAATTGTGCACGACCGCAAGCTTAAATATTTTTGCCAAGTTTGCAATTA
TCCCGCCTATAGCCACTATAACCTCTTTCTCCATAACCAAAGTGAAGCAC
ATAATCGCAAGCTGGTTGAGAAACAGGCTCAAGAAGAGGAGGATTGCCAG
AGCAGGAAGACAAATCCAGAATTGGATCTCTTCTACGAGAGAAACAAGGA
GCAATCTCTT
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