BolC1t00270H-R (mRNA) Brassica oleracea HDEM

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	BolC1t00270H-R
Unique Name	BolC1t00270H-R
Type	mRNA
Organism	Brassica oleracea HDEM (cv. HDEM, Wild cabbage)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C1	contig	C1:1497637..1499079 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Brassica oleracea HDEM OGS1.0	2018-11-02

Properties


Property Name	Value
Stop	0
Start	1
Cds size	1110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
BolC1t00270H	BolC1t00270H	Brassica oleracea HDEM	gene	C1 1497637..1499079 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
BolC1t00270H-R	BolC1t00270H-R-P	Brassica oleracea HDEM	polypeptide	C1 1497637..1499079 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BolC1t00270H_exon1	BolC1t00270H_exon1	Brassica oleracea HDEM	exon	C1 1497637..1497895 +
BolC1t00270H_exon2	BolC1t00270H_exon2	Brassica oleracea HDEM	exon	C1 1497963..1498193 +
BolC1t00270H_exon3	BolC1t00270H_exon3	Brassica oleracea HDEM	exon	C1 1498300..1498703 +
BolC1t00270H_exon4	BolC1t00270H_exon4	Brassica oleracea HDEM	exon	C1 1498778..1498894 +
BolC1t00270H_exon5	BolC1t00270H_exon5	Brassica oleracea HDEM	exon	C1 1498981..1499079 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BolC1t00270H	BolC1t00270H	Brassica oleracea HDEM	CDS	C1 1497637..1497895 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at C1:1497637..1499079+
coding sequence from alignment at C1:1497637..1499079+

spliced messenger RNA

>BolC1t00270H-R ID=BolC1t00270H-R|Name=BolC1t00270H-R|organism=Brassica oleracea HDEM|type=mRNA|length=1110bp|location=Sequence derived from alignment at C1:1497637..1499079+ (Brassica oleracea HDEM)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAATGTTGAAACTCAACACCCCCACTTTCCCAAATTTAGCGTCATC
TCTGTTCCCAAATTCGAACCCAAGAGGACCCAGCGAGATTCGATTCTCCA
ACAGATCAAATTCGAACCCAAGAGGACCCAGCCAGATTCGATTCTCTAAC
AGATGGGGCAAGGCTAACGCCGATCTCCTCTCTCTCTCTCTTTTGGATCA
ACGTTGCAGAAGGGATCAAATTCGTTGTTGCGGGATGGCAGGAGGAGGAG
GAGGAGGAGGTGATCATCATCATGTGGGAGTGTGGTGGGACCTGAACACG
TGTCCGGTTCCGGCTGGTGTAGACCCTCGTTGTGTCCGTCCGTGTATAGA
ATCTGCCTTGGAGAAGCTGTTTGGTCGTCGTTCTGCAGTCAGCATCTATA
TCTATGCCATAGGAAACCTAGAATTCATCTCTACTGACCTCTTGCAAAAC
ATCTCTTCCTCCGGAATCATTGTTACTCATGCCCCCTGCGGTATGCACGA
CTTACATGATTTTCTTATCGACTGGTCTGCGGATGAGCTTAAAAACCCAC
ATCCTCCTGGTTACGTAATGATCATCTCGAGTGATTATAGACTGCTTTAC
CCTAAGCGTTTTCGGCTTTTTGGATTCACTACTTTTGTTGCATATCCAAA
AGGTGTTCGCCTACTTGCCCATCTTACCCAGCTAAAATTTATTGGCCGAG
AGTTTGACGAAGTGTTTGCCAAAGAGTTTGTCTGGGAAACCTTATTGAGT
GATAATTTGGATGAAACTTTATTATTGAGTGACAACAACACATGTGATGA
GAAACCTCTCTGCATTTGCAACATATGCTGTTATGATTACGAAGTATGTG
ACGAATTCATCACTCATCTCAAGTGTGAAGAGCACAGAAACCAGTGGTCT
GAAATTGTGCACGACCGCAAGCTTAAATATTTTTGCCAAGTTTGCAATTA
TCCCGCCTATAGCCACTATAACCTCTTTCTCCATAACCAAAGTGAAGCAC
ATAATCGCAAGCTGGTTGAGAAACAGGCTCAAGAAGAGGAGGATTGCCAG
AGCAGGAAGACAAATCCAGAATTGGATCTCTTCTACGAGAGAAACAAGGA
GCAATCTCTT

protein sequence of BolC1t00270H-R

>BolC1t00270H-R-P ID=BolC1t00270H-R-P|Name=BolC1t00270H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=370bp
MSMLKLNTPTFPNLASSLFPNSNPRGPSEIRFSNRSNSNPRGPSQIRFSN
RWGKANADLLSLSLLDQRCRRDQIRCCGMAGGGGGGGDHHHVGVWWDLNT
CPVPAGVDPRCVRPCIESALEKLFGRRSAVSIYIYAIGNLEFISTDLLQN
ISSSGIIVTHAPCGMHDLHDFLIDWSADELKNPHPPGYVMIISSDYRLLY
PKRFRLFGFTTFVAYPKGVRLLAHLTQLKFIGREFDEVFAKEFVWETLLS
DNLDETLLLSDNNTCDEKPLCICNICCYDYEVCDEFITHLKCEEHRNQWS
EIVHDRKLKYFCQVCNYPAYSHYNLFLHNQSEAHNRKLVEKQAQEEEDCQ
SRKTNPELDLFYERNKEQSL

mRNA from alignment at C1:1497637..1499079+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>BolC1t00270H-R ID=BolC1t00270H-R|Name=BolC1t00270H-R|organism=Brassica oleracea HDEM|type=mRNA|length=1443bp|location=Sequence derived from alignment at C1:1497637..1499079+ (Brassica oleracea HDEM)
ATGTCAATGTTGAAACTCAACACCCCCACTTTCCCAAATTTAGCGTCATC
TCTGTTCCCAAATTCGAACCCAAGAGGACCCAGCGAGATTCGATTCTCCA
ACAGATCAAATTCGAACCCAAGAGGACCCAGCCAGATTCGATTCTCTAAC
AGATGGGGCAAGGCTAACGCCGATCTCCTCTCTCTCTCTCTTTTGGATCA
ACGTTGCAGAAGGGATCAAATTCGTTGTTGCGGGATGGCAGGAGGAGGAG
GAGGAGGAGGTCGGTAGTTATTGATTCAAATTTACTTGTGATTAGATTTT
AAAATGGTGGTTGTGTTTGGTTTTAGGTGATCATCATCATGTGGGAGTGT
GGTGGGACCTGAACACGTGTCCGGTTCCGGCTGGTGTAGACCCTCGTTGT
GTCCGTCCGTGTATAGAATCTGCCTTGGAGAAGCTGTTTGGTCGTCGTTC
TGCAGTCAGCATCTATATCTATGCCATAGGAAACCTAGAATTCATCTCTA
CTGACCTCTTGCAAAACATCTCTTCCTCCGGAATCATTGTTACTCATGCC
CCCTGCGGTAAAGTCAATCAAATCAATCCTAATCGATTTGTTTTGTTTAG
TCTAATTAATTAGAGAGAGTTAGTAGTCTCATGATCTGATCTGGCCTCCT
TCTCTACTCTTAGGTATGCACGACTTACATGATTTTCTTATCGACTGGTC
TGCGGATGAGCTTAAAAACCCACATCCTCCTGGTTACGTAATGATCATCT
CGAGTGATTATAGACTGCTTTACCCTAAGCGTTTTCGGCTTTTTGGATTC
ACTACTTTTGTTGCATATCCAAAAGGTGTTCGCCTACTTGCCCATCTTAC
CCAGCTAAAATTTATTGGCCGAGAGTTTGACGAAGTGTTTGCCAAAGAGT
TTGTCTGGGAAACCTTATTGAGTGATAATTTGGATGAAACTTTATTATTG
AGTGACAACAACACATGTGATGAGAAACCTCTCTGCATTTGCAACATATG
CTGTTATGATTACGAAGTATGTGACGAATTCATCACTCATCTCAAGTGTG
AAGAGCACAGAAACCAGGTAATTAAGCAAGCAGCATGCATCCTCAGCTTT
TTTTTTATCATTTTTTTTCATGTATCTGTGTGTGTGTGCAGTGGTCTGAA
ATTGTGCACGACCGCAAGCTTAAATATTTTTGCCAAGTTTGCAATTATCC
CGCCTATAGCCACTATAACCTCTTTCTCCATAACCAAAGTGAAGCACATA
ATCGCAAGGTAAGCGCAGCTTGTGATCATTATTATACAGTTTAACAACTC
TCTGTATCGCTAAAATTTGATCCCCATTTTGGTTTGTTTTCAAGCTGGTT
GAGAAACAGGCTCAAGAAGAGGAGGATTGCCAGAGCAGGAAGACAAATCC
AGAATTGGATCTCTTCTACGAGAGAAACAAGGAGCAATCTCTT

Coding sequence (CDS) from alignment at C1:1497637..1499079+

>BolC1t00270H-R ID=BolC1t00270H-R|Name=BolC1t00270H-R|organism=Brassica oleracea HDEM|type=CDS|length=1110bp|location=Sequence derived from alignment at C1:1497637..1499079+ (Brassica oleracea HDEM)
ATGTCAATGTTGAAACTCAACACCCCCACTTTCCCAAATTTAGCGTCATC
TCTGTTCCCAAATTCGAACCCAAGAGGACCCAGCGAGATTCGATTCTCCA
ACAGATCAAATTCGAACCCAAGAGGACCCAGCCAGATTCGATTCTCTAAC
AGATGGGGCAAGGCTAACGCCGATCTCCTCTCTCTCTCTCTTTTGGATCA
ACGTTGCAGAAGGGATCAAATTCGTTGTTGCGGGATGGCAGGAGGAGGAG
GAGGAGGAGGTGATCATCATCATGTGGGAGTGTGGTGGGACCTGAACACG
TGTCCGGTTCCGGCTGGTGTAGACCCTCGTTGTGTCCGTCCGTGTATAGA
ATCTGCCTTGGAGAAGCTGTTTGGTCGTCGTTCTGCAGTCAGCATCTATA
TCTATGCCATAGGAAACCTAGAATTCATCTCTACTGACCTCTTGCAAAAC
ATCTCTTCCTCCGGAATCATTGTTACTCATGCCCCCTGCGGTATGCACGA
CTTACATGATTTTCTTATCGACTGGTCTGCGGATGAGCTTAAAAACCCAC
ATCCTCCTGGTTACGTAATGATCATCTCGAGTGATTATAGACTGCTTTAC
CCTAAGCGTTTTCGGCTTTTTGGATTCACTACTTTTGTTGCATATCCAAA
AGGTGTTCGCCTACTTGCCCATCTTACCCAGCTAAAATTTATTGGCCGAG
AGTTTGACGAAGTGTTTGCCAAAGAGTTTGTCTGGGAAACCTTATTGAGT
GATAATTTGGATGAAACTTTATTATTGAGTGACAACAACACATGTGATGA
GAAACCTCTCTGCATTTGCAACATATGCTGTTATGATTACGAAGTATGTG
ACGAATTCATCACTCATCTCAAGTGTGAAGAGCACAGAAACCAGTGGTCT
GAAATTGTGCACGACCGCAAGCTTAAATATTTTTGCCAAGTTTGCAATTA
TCCCGCCTATAGCCACTATAACCTCTTTCTCCATAACCAAAGTGAAGCAC
ATAATCGCAAGCTGGTTGAGAAACAGGCTCAAGAAGAGGAGGATTGCCAG
AGCAGGAAGACAAATCCAGAATTGGATCTCTTCTACGAGAGAAACAAGGA
GCAATCTCTT

Orthology

View orthology data for BolC1t00270H-R