BolC1t00264H-R (mRNA) Brassica oleracea HDEM

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	BolC1t00264H-R
Unique Name	BolC1t00264H-R
Type	mRNA
Organism	Brassica oleracea HDEM (cv. HDEM, Wild cabbage)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C1	contig	C1:1456689..1459059 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Brassica oleracea HDEM OGS1.0	2018-11-02

Properties


Property Name	Value
Stop	1
Start	1
Cds size	1470

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
BolC1t00264H	BolC1t00264H	Brassica oleracea HDEM	gene	C1 1456689..1459059 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
BolC1t00264H-R	BolC1t00264H-R-P	Brassica oleracea HDEM	polypeptide	C1 1456689..1459059 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BolC1t00264H_exon1	BolC1t00264H_exon1	Brassica oleracea HDEM	exon	C1 1456689..1456804 -
BolC1t00264H_exon2	BolC1t00264H_exon2	Brassica oleracea HDEM	exon	C1 1456900..1456983 -
BolC1t00264H_exon3	BolC1t00264H_exon3	Brassica oleracea HDEM	exon	C1 1457061..1457135 -
BolC1t00264H_exon4	BolC1t00264H_exon4	Brassica oleracea HDEM	exon	C1 1457223..1457317 -
BolC1t00264H_exon5	BolC1t00264H_exon5	Brassica oleracea HDEM	exon	C1 1457401..1457606 -
BolC1t00264H_exon6	BolC1t00264H_exon6	Brassica oleracea HDEM	exon	C1 1457690..1457761 -
BolC1t00264H_exon7	BolC1t00264H_exon7	Brassica oleracea HDEM	exon	C1 1457844..1457897 -
BolC1t00264H_exon8	BolC1t00264H_exon8	Brassica oleracea HDEM	exon	C1 1457979..1458098 -
BolC1t00264H_exon9	BolC1t00264H_exon9	Brassica oleracea HDEM	exon	C1 1458174..1458359 -
BolC1t00264H_exon10	BolC1t00264H_exon10	Brassica oleracea HDEM	exon	C1 1458435..1458602 -
BolC1t00264H_exon11	BolC1t00264H_exon11	Brassica oleracea HDEM	exon	C1 1458679..1458804 -
BolC1t00264H_exon12	BolC1t00264H_exon12	Brassica oleracea HDEM	exon	C1 1458892..1459059 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BolC1t00264H	BolC1t00264H	Brassica oleracea HDEM	CDS	C1 1456689..1456804 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at C1:1456689..1459059-
coding sequence from alignment at C1:1456689..1459059-

spliced messenger RNA

>BolC1t00264H-R ID=BolC1t00264H-R|Name=BolC1t00264H-R|organism=Brassica oleracea HDEM|type=mRNA|length=1470bp|location=Sequence derived from alignment at C1:1456689..1459059- (Brassica oleracea HDEM)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGACGACGGCGATAGGCTTTCTGATGCTCTTGTCATACTTCTTGAG
CTTGTCCCATGGATTAGTACAACCCCGTAGGATCTCTCATGGTTTGTCCG
AAAGCGGAAAGTACTTGACGAGAGATGAGCTCTGGTTCAATCAAACCCTT
GACCACTTCTCTCCATATGACCATCGCAGATTCAGACAGAGATACTATGA
ATATCTAGATCATTTACGAGTTCCTGATGGACCTATATTTCTGATGATCT
GCGGCGAAGGCCCTTGCTATGGAATACCAAATGATTATATAAGTGTGTTA
GCGAAGAAGTTCGACGCAGGTGTTGTTTCACTCGAGCATCGTTACTATGG
AAAAAGCTCACCTTTTAACTCATTAGCCACTGAGAATCTCAAGTATCTTT
CATCTAAACAAGCCCTTTCCGATTTAGCTGCTTTTCGTGGATATTACCAG
GCAAGTTTTCTTGAATATTTGAATGTTAAGCTGAATAGAACTGGGAAGGT
TGATAATCCTTGGTTCTTCTTCGGAGCGTCTTACTCTGGAGCTTTGAGCG
CTTGGTTCCGCCTAAAGTTCCCTCATTTGACTTGTGGAAGCCTCGCTAGC
TCTGCAGTTGTTCGTGCTGTCTACGAGTTTCCTGAATTTGACAAACAGCA
GATAGGTGAGTCAGCTGGACCGGAATGTAAAGCTGCACTACAAGAGACTA
ATAAACTCGTGGAACTAGCGCTTAAAGTAAATAATAAGGCTCTGAAAGCT
CTCTTCAATTCCACCGAGCTTGATGTTGATGGTGATTTCTTATACTTCGT
AGCGGATGCACAAGTCATGGCGTTCCAATACGGAAACCCAGATAAGTTAT
GTGTTCCTATGGTGGATGCCAAGAAGAGCGGTGGTGATTTAGTGGAAGCA
TATGCTAAATACGTTAGAGAGTATTGCTTCGGAGTTTTTGGGTTAAGCGC
TAAAACATATAGCAGGAAGCATCTGCTAGATACTGCGATCACCCCAGAGA
GCGCAGATCGTCTGTGGTGGTTCCAAGTTTGCACTGAAGTGGCGTATTTC
CAGGTGGCACCTGCAAACGATAGCATCCGGTCTCATCAAGTCAACACAGA
GTATCATTTGGATCTATGCAAGACTCTGTTTGGTAAAGGTGTTTATCCTG
AAGTCGATGCAACAAACCTGTACTATGGAGGTGATAGAATTGCTGCTACG
AAAATTGTTTTCACGAATGGGTCACAAGATCCATGGCGTCATGCATCCAA
ACAGACCTCATCTCCTGACCTGCCTTCTTACATCATCACTTGTCACAACT
GTGGCCATGGAAGTGATCTTCGAGGATGCCCTCAGTCTCCATTGATCATC
GAAGGTGATTCCAAGAACTGCAGTTCGCCAGATGCTGTGAATAAAGTGAG
GCAACATATAATAGAACACATGGACTTGTGGCTCTCTGAGTGCCGTGGAG
TGCTTCGAAGTTCCATCTAG

protein sequence of BolC1t00264H-R

>BolC1t00264H-R-P ID=BolC1t00264H-R-P|Name=BolC1t00264H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=490bp
MATTAIGFLMLLSYFLSLSHGLVQPRRISHGLSESGKYLTRDELWFNQTL
DHFSPYDHRRFRQRYYEYLDHLRVPDGPIFLMICGEGPCYGIPNDYISVL
AKKFDAGVVSLEHRYYGKSSPFNSLATENLKYLSSKQALSDLAAFRGYYQ
ASFLEYLNVKLNRTGKVDNPWFFFGASYSGALSAWFRLKFPHLTCGSLAS
SAVVRAVYEFPEFDKQQIGESAGPECKAALQETNKLVELALKVNNKALKA
LFNSTELDVDGDFLYFVADAQVMAFQYGNPDKLCVPMVDAKKSGGDLVEA
YAKYVREYCFGVFGLSAKTYSRKHLLDTAITPESADRLWWFQVCTEVAYF
QVAPANDSIRSHQVNTEYHLDLCKTLFGKGVYPEVDATNLYYGGDRIAAT
KIVFTNGSQDPWRHASKQTSSPDLPSYIITCHNCGHGSDLRGCPQSPLII
EGDSKNCSSPDAVNKVRQHIIEHMDLWLSECRGVLRSSI.

mRNA from alignment at C1:1456689..1459059-

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>BolC1t00264H-R ID=BolC1t00264H-R|Name=BolC1t00264H-R|organism=Brassica oleracea HDEM|type=mRNA|length=2371bp|location=Sequence derived from alignment at C1:1456689..1459059- (Brassica oleracea HDEM)
ATGGCGACGACGGCGATAGGCTTTCTGATGCTCTTGTCATACTTCTTGAG
CTTGTCCCATGGATTAGTACAACCCCGTAGGATCTCTCATGGTTTGTCCG
AAAGCGGAAAGTACTTGACGAGAGATGAGCTCTGGTTCAATCAAACCCTT
GACCACTTCTCTCCATATGTAATCAATCTAATCCGTTTAGAGGGATACTT
TTTTTAGATTCTGTGTGTTCTATAAATAGTTATGTTTTTTTTTTTTACAT
TACAGGACCATCGCAGATTCAGACAGAGATACTATGAATATCTAGATCAT
TTACGAGTTCCTGATGGACCTATATTTCTGATGATCTGCGGCGAAGGCCC
TTGCTATGGAATACCAAATGATTATATAAGTGTAAGAGTTTTTTTTTCTC
TGTAAAGACTACTCCTTTGATTGATTTAACATCGATAGTTTCTGAAATTT
TCTTTAGGTGTTAGCGAAGAAGTTCGACGCAGGTGTTGTTTCACTCGAGC
ATCGTTACTATGGAAAAAGCTCACCTTTTAACTCATTAGCCACTGAGAAT
CTCAAGTATCTTTCATCTAAACAAGCCCTTTCCGATTTAGCTGCTTTTCG
TGGATATTACCAGGCAAGTTTTCTTGTTGTTTTTGTGCTATATAGAGGGT
GTGTCTGTAATTCAATGAGCATGGTGTTTGAGATTTTCCTGTGGATGCAG
GAATATTTGAATGTTAAGCTGAATAGAACTGGGAAGGTTGATAATCCTTG
GTTCTTCTTCGGAGCGTCTTACTCTGGAGCTTTGAGCGCTTGGTTCCGCC
TAAAGTTCCCTCATTTGACTTGTGGAAGCCTCGCTAGCTCTGCAGTTGTT
CGTGCTGTCTACGAGTTTCCTGAATTTGACAAACAGGTGAAAAACCTTCC
TTACAAGACATGTGTCTTTTCCATATAGAGTATGGAATCAAGATTATTGT
GACTCAATGAGCAGATAGGTGAGTCAGCTGGACCGGAATGTAAAGCTGCA
CTACAAGAGACTAATAAACTCGTGGAACTAGCGCTTAAAGTAAATAATAA
GGCTCTGAAAGCTCTCTTCAATTCCACCGAGGTCTAGCTTTCTTCTTTCT
CTTGAATCCAAGAAGTAAAAACTCTTGTCTCCGAATCTGATTAAGTCTCT
GAAAATCTGCAGCTTGATGTTGATGGTGATTTCTTATACTTCGTAGCGGA
TGCACAAGTCATGGCGGTAATAATATACATACATGTTCATCTATATGATT
CTCATTTTGTTTCTAGTTTTTAAATATTTTATTTTTACAATTTGGTAGTT
CCAATACGGAAACCCAGATAAGTTATGTGTTCCTATGGTGGATGCCAAGA
AGAGCGGTGGTGATTTAGTGGTAACTTCCCCTTTTATATGATCACAGATC
CTTTATTATTGTGGATATGTGTGACACATTATTTTGAATATGTATCAATC
CAGGAAGCATATGCTAAATACGTTAGAGAGTATTGCTTCGGAGTTTTTGG
GTTAAGCGCTAAAACATATAGCAGGAAGCATCTGCTAGATACTGCGATCA
CCCCAGAGAGCGCAGATCGTCTGTGGTGGTTCCAAGTTTGCACTGAAGTG
GCGTATTTCCAGGTGGCACCTGCAAACGATAGCATCCGGTCTCATCAAGT
CAACACAGAGTAAACACACAGCCACAAACTCTTGTGTAACGTTTCAGTTC
ATCATCCCGTTTACATTTTTCTTGGTGATTTTTTTTTAAAAGGTATCATT
TGGATCTATGCAAGACTCTGTTTGGTAAAGGTGTTTATCCTGAAGTCGAT
GCAACAAACCTGTACTATGGAGGTGATAGAATTGCTGGTATGTAACACTG
AGATGAATGCTCTTCTTGTTCCTTTAGGACATTCCGACAGCTTATTTGGG
TCGTGGTGTTCTCAATTTTTGCAGCTACGAAAATTGTTTTCACGAATGGG
TCACAAGATCCATGGCGTCATGCATCCAAACAGACCTCATCTCCTGACCG
TAAGTCTCCATTTACTTTGTTCAACATTGATTCTTGACGTTAAGTAGCAT
TAACAAGTTAGTGCTCGACGACACAGTGCCTTCTTACATCATCACTTGTC
ACAACTGTGGCCATGGAAGTGATCTTCGAGGATGCCCTCAGTCTCCATTG
ATCATCGAAGGTATATATATTACCAGCCTCTCATTCTTTCAGATGCTTAA
ACTGCAAGTAAAGACGGTACTTAAAACAACTTTTTGTATCGTTTCTTATT
TTCAGGTGATTCCAAGAACTGCAGTTCGCCAGATGCTGTGAATAAAGTGA
GGCAACATATAATAGAACACATGGACTTGTGGCTCTCTGAGTGCCGTGGA
GTGCTTCGAAGTTCCATCTAG

Coding sequence (CDS) from alignment at C1:1456689..1459059-

>BolC1t00264H-R ID=BolC1t00264H-R|Name=BolC1t00264H-R|organism=Brassica oleracea HDEM|type=CDS|length=1470bp|location=Sequence derived from alignment at C1:1456689..1459059- (Brassica oleracea HDEM)
ATGGCGACGACGGCGATAGGCTTTCTGATGCTCTTGTCATACTTCTTGAG
CTTGTCCCATGGATTAGTACAACCCCGTAGGATCTCTCATGGTTTGTCCG
AAAGCGGAAAGTACTTGACGAGAGATGAGCTCTGGTTCAATCAAACCCTT
GACCACTTCTCTCCATATGACCATCGCAGATTCAGACAGAGATACTATGA
ATATCTAGATCATTTACGAGTTCCTGATGGACCTATATTTCTGATGATCT
GCGGCGAAGGCCCTTGCTATGGAATACCAAATGATTATATAAGTGTGTTA
GCGAAGAAGTTCGACGCAGGTGTTGTTTCACTCGAGCATCGTTACTATGG
AAAAAGCTCACCTTTTAACTCATTAGCCACTGAGAATCTCAAGTATCTTT
CATCTAAACAAGCCCTTTCCGATTTAGCTGCTTTTCGTGGATATTACCAG
GCAAGTTTTCTTGAATATTTGAATGTTAAGCTGAATAGAACTGGGAAGGT
TGATAATCCTTGGTTCTTCTTCGGAGCGTCTTACTCTGGAGCTTTGAGCG
CTTGGTTCCGCCTAAAGTTCCCTCATTTGACTTGTGGAAGCCTCGCTAGC
TCTGCAGTTGTTCGTGCTGTCTACGAGTTTCCTGAATTTGACAAACAGCA
GATAGGTGAGTCAGCTGGACCGGAATGTAAAGCTGCACTACAAGAGACTA
ATAAACTCGTGGAACTAGCGCTTAAAGTAAATAATAAGGCTCTGAAAGCT
CTCTTCAATTCCACCGAGCTTGATGTTGATGGTGATTTCTTATACTTCGT
AGCGGATGCACAAGTCATGGCGTTCCAATACGGAAACCCAGATAAGTTAT
GTGTTCCTATGGTGGATGCCAAGAAGAGCGGTGGTGATTTAGTGGAAGCA
TATGCTAAATACGTTAGAGAGTATTGCTTCGGAGTTTTTGGGTTAAGCGC
TAAAACATATAGCAGGAAGCATCTGCTAGATACTGCGATCACCCCAGAGA
GCGCAGATCGTCTGTGGTGGTTCCAAGTTTGCACTGAAGTGGCGTATTTC
CAGGTGGCACCTGCAAACGATAGCATCCGGTCTCATCAAGTCAACACAGA
GTATCATTTGGATCTATGCAAGACTCTGTTTGGTAAAGGTGTTTATCCTG
AAGTCGATGCAACAAACCTGTACTATGGAGGTGATAGAATTGCTGCTACG
AAAATTGTTTTCACGAATGGGTCACAAGATCCATGGCGTCATGCATCCAA
ACAGACCTCATCTCCTGACCTGCCTTCTTACATCATCACTTGTCACAACT
GTGGCCATGGAAGTGATCTTCGAGGATGCCCTCAGTCTCCATTGATCATC
GAAGGTGATTCCAAGAACTGCAGTTCGCCAGATGCTGTGAATAAAGTGAG
GCAACATATAATAGAACACATGGACTTGTGGCTCTCTGAGTGCCGTGGAG
TGCTTCGAAGTTCCATCTAG

Orthology

View orthology data for BolC1t00264H-R