BolC1t00264H-R (mRNA) Brassica oleracea HDEM

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBolC1t00264H-R
Unique NameBolC1t00264H-R
TypemRNA
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C1contigC1:1456689..1459059 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica oleracea HDEM OGS1.02018-11-02
Properties
Property NameValue
Stop1
Start1
Cds size1470
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC1t00264HBolC1t00264HBrassica oleracea HDEMgeneC1 1456689..1459059 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00264H-RBolC1t00264H-R-PBrassica oleracea HDEMpolypeptideC1 1456689..1459059 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00264H_exon1BolC1t00264H_exon1Brassica oleracea HDEMexonC1 1456689..1456804 -
BolC1t00264H_exon2BolC1t00264H_exon2Brassica oleracea HDEMexonC1 1456900..1456983 -
BolC1t00264H_exon3BolC1t00264H_exon3Brassica oleracea HDEMexonC1 1457061..1457135 -
BolC1t00264H_exon4BolC1t00264H_exon4Brassica oleracea HDEMexonC1 1457223..1457317 -
BolC1t00264H_exon5BolC1t00264H_exon5Brassica oleracea HDEMexonC1 1457401..1457606 -
BolC1t00264H_exon6BolC1t00264H_exon6Brassica oleracea HDEMexonC1 1457690..1457761 -
BolC1t00264H_exon7BolC1t00264H_exon7Brassica oleracea HDEMexonC1 1457844..1457897 -
BolC1t00264H_exon8BolC1t00264H_exon8Brassica oleracea HDEMexonC1 1457979..1458098 -
BolC1t00264H_exon9BolC1t00264H_exon9Brassica oleracea HDEMexonC1 1458174..1458359 -
BolC1t00264H_exon10BolC1t00264H_exon10Brassica oleracea HDEMexonC1 1458435..1458602 -
BolC1t00264H_exon11BolC1t00264H_exon11Brassica oleracea HDEMexonC1 1458679..1458804 -
BolC1t00264H_exon12BolC1t00264H_exon12Brassica oleracea HDEMexonC1 1458892..1459059 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00264HBolC1t00264HBrassica oleracea HDEMCDSC1 1456689..1456804 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BolC1t00264H-R ID=BolC1t00264H-R|Name=BolC1t00264H-R|organism=Brassica oleracea HDEM|type=mRNA|length=1470bp|location=Sequence derived from alignment at C1:1456689..1459059- (Brassica oleracea HDEM)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGACGACGGCGATAGGCTTTCTGATGCTCTTGTCATACTTCTTGAG
CTTGTCCCATGGATTAGTACAACCCCGTAGGATCTCTCATGGTTTGTCCG
AAAGCGGAAAGTACTTGACGAGAGATGAGCTCTGGTTCAATCAAACCCTT
GACCACTTCTCTCCATATGACCATCGCAGATTCAGACAGAGATACTATGA
ATATCTAGATCATTTACGAGTTCCTGATGGACCTATATTTCTGATGATCT
GCGGCGAAGGCCCTTGCTATGGAATACCAAATGATTATATAAGTGTGTTA
GCGAAGAAGTTCGACGCAGGTGTTGTTTCACTCGAGCATCGTTACTATGG
AAAAAGCTCACCTTTTAACTCATTAGCCACTGAGAATCTCAAGTATCTTT
CATCTAAACAAGCCCTTTCCGATTTAGCTGCTTTTCGTGGATATTACCAG
GCAAGTTTTCTTGAATATTTGAATGTTAAGCTGAATAGAACTGGGAAGGT
TGATAATCCTTGGTTCTTCTTCGGAGCGTCTTACTCTGGAGCTTTGAGCG
CTTGGTTCCGCCTAAAGTTCCCTCATTTGACTTGTGGAAGCCTCGCTAGC
TCTGCAGTTGTTCGTGCTGTCTACGAGTTTCCTGAATTTGACAAACAGCA
GATAGGTGAGTCAGCTGGACCGGAATGTAAAGCTGCACTACAAGAGACTA
ATAAACTCGTGGAACTAGCGCTTAAAGTAAATAATAAGGCTCTGAAAGCT
CTCTTCAATTCCACCGAGCTTGATGTTGATGGTGATTTCTTATACTTCGT
AGCGGATGCACAAGTCATGGCGTTCCAATACGGAAACCCAGATAAGTTAT
GTGTTCCTATGGTGGATGCCAAGAAGAGCGGTGGTGATTTAGTGGAAGCA
TATGCTAAATACGTTAGAGAGTATTGCTTCGGAGTTTTTGGGTTAAGCGC
TAAAACATATAGCAGGAAGCATCTGCTAGATACTGCGATCACCCCAGAGA
GCGCAGATCGTCTGTGGTGGTTCCAAGTTTGCACTGAAGTGGCGTATTTC
CAGGTGGCACCTGCAAACGATAGCATCCGGTCTCATCAAGTCAACACAGA
GTATCATTTGGATCTATGCAAGACTCTGTTTGGTAAAGGTGTTTATCCTG
AAGTCGATGCAACAAACCTGTACTATGGAGGTGATAGAATTGCTGCTACG
AAAATTGTTTTCACGAATGGGTCACAAGATCCATGGCGTCATGCATCCAA
ACAGACCTCATCTCCTGACCTGCCTTCTTACATCATCACTTGTCACAACT
GTGGCCATGGAAGTGATCTTCGAGGATGCCCTCAGTCTCCATTGATCATC
GAAGGTGATTCCAAGAACTGCAGTTCGCCAGATGCTGTGAATAAAGTGAG
GCAACATATAATAGAACACATGGACTTGTGGCTCTCTGAGTGCCGTGGAG
TGCTTCGAAGTTCCATCTAG
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protein sequence of BolC1t00264H-R

>BolC1t00264H-R-P ID=BolC1t00264H-R-P|Name=BolC1t00264H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=490bp
MATTAIGFLMLLSYFLSLSHGLVQPRRISHGLSESGKYLTRDELWFNQTL
DHFSPYDHRRFRQRYYEYLDHLRVPDGPIFLMICGEGPCYGIPNDYISVL
AKKFDAGVVSLEHRYYGKSSPFNSLATENLKYLSSKQALSDLAAFRGYYQ
ASFLEYLNVKLNRTGKVDNPWFFFGASYSGALSAWFRLKFPHLTCGSLAS
SAVVRAVYEFPEFDKQQIGESAGPECKAALQETNKLVELALKVNNKALKA
LFNSTELDVDGDFLYFVADAQVMAFQYGNPDKLCVPMVDAKKSGGDLVEA
YAKYVREYCFGVFGLSAKTYSRKHLLDTAITPESADRLWWFQVCTEVAYF
QVAPANDSIRSHQVNTEYHLDLCKTLFGKGVYPEVDATNLYYGGDRIAAT
KIVFTNGSQDPWRHASKQTSSPDLPSYIITCHNCGHGSDLRGCPQSPLII
EGDSKNCSSPDAVNKVRQHIIEHMDLWLSECRGVLRSSI.
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mRNA from alignment at C1:1456689..1459059-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>BolC1t00264H-R ID=BolC1t00264H-R|Name=BolC1t00264H-R|organism=Brassica oleracea HDEM|type=mRNA|length=2371bp|location=Sequence derived from alignment at C1:1456689..1459059- (Brassica oleracea HDEM)
ATGGCGACGACGGCGATAGGCTTTCTGATGCTCTTGTCATACTTCTTGAG CTTGTCCCATGGATTAGTACAACCCCGTAGGATCTCTCATGGTTTGTCCG AAAGCGGAAAGTACTTGACGAGAGATGAGCTCTGGTTCAATCAAACCCTT GACCACTTCTCTCCATATGTAATCAATCTAATCCGTTTAGAGGGATACTT TTTTTAGATTCTGTGTGTTCTATAAATAGTTATGTTTTTTTTTTTTACAT TACAGGACCATCGCAGATTCAGACAGAGATACTATGAATATCTAGATCAT TTACGAGTTCCTGATGGACCTATATTTCTGATGATCTGCGGCGAAGGCCC TTGCTATGGAATACCAAATGATTATATAAGTGTAAGAGTTTTTTTTTCTC TGTAAAGACTACTCCTTTGATTGATTTAACATCGATAGTTTCTGAAATTT TCTTTAGGTGTTAGCGAAGAAGTTCGACGCAGGTGTTGTTTCACTCGAGC ATCGTTACTATGGAAAAAGCTCACCTTTTAACTCATTAGCCACTGAGAAT CTCAAGTATCTTTCATCTAAACAAGCCCTTTCCGATTTAGCTGCTTTTCG TGGATATTACCAGGCAAGTTTTCTTGTTGTTTTTGTGCTATATAGAGGGT GTGTCTGTAATTCAATGAGCATGGTGTTTGAGATTTTCCTGTGGATGCAG GAATATTTGAATGTTAAGCTGAATAGAACTGGGAAGGTTGATAATCCTTG GTTCTTCTTCGGAGCGTCTTACTCTGGAGCTTTGAGCGCTTGGTTCCGCC TAAAGTTCCCTCATTTGACTTGTGGAAGCCTCGCTAGCTCTGCAGTTGTT CGTGCTGTCTACGAGTTTCCTGAATTTGACAAACAGGTGAAAAACCTTCC TTACAAGACATGTGTCTTTTCCATATAGAGTATGGAATCAAGATTATTGT GACTCAATGAGCAGATAGGTGAGTCAGCTGGACCGGAATGTAAAGCTGCA CTACAAGAGACTAATAAACTCGTGGAACTAGCGCTTAAAGTAAATAATAA GGCTCTGAAAGCTCTCTTCAATTCCACCGAGGTCTAGCTTTCTTCTTTCT CTTGAATCCAAGAAGTAAAAACTCTTGTCTCCGAATCTGATTAAGTCTCT GAAAATCTGCAGCTTGATGTTGATGGTGATTTCTTATACTTCGTAGCGGA TGCACAAGTCATGGCGGTAATAATATACATACATGTTCATCTATATGATT CTCATTTTGTTTCTAGTTTTTAAATATTTTATTTTTACAATTTGGTAGTT CCAATACGGAAACCCAGATAAGTTATGTGTTCCTATGGTGGATGCCAAGA AGAGCGGTGGTGATTTAGTGGTAACTTCCCCTTTTATATGATCACAGATC CTTTATTATTGTGGATATGTGTGACACATTATTTTGAATATGTATCAATC CAGGAAGCATATGCTAAATACGTTAGAGAGTATTGCTTCGGAGTTTTTGG GTTAAGCGCTAAAACATATAGCAGGAAGCATCTGCTAGATACTGCGATCA CCCCAGAGAGCGCAGATCGTCTGTGGTGGTTCCAAGTTTGCACTGAAGTG GCGTATTTCCAGGTGGCACCTGCAAACGATAGCATCCGGTCTCATCAAGT CAACACAGAGTAAACACACAGCCACAAACTCTTGTGTAACGTTTCAGTTC ATCATCCCGTTTACATTTTTCTTGGTGATTTTTTTTTAAAAGGTATCATT TGGATCTATGCAAGACTCTGTTTGGTAAAGGTGTTTATCCTGAAGTCGAT GCAACAAACCTGTACTATGGAGGTGATAGAATTGCTGGTATGTAACACTG AGATGAATGCTCTTCTTGTTCCTTTAGGACATTCCGACAGCTTATTTGGG TCGTGGTGTTCTCAATTTTTGCAGCTACGAAAATTGTTTTCACGAATGGG TCACAAGATCCATGGCGTCATGCATCCAAACAGACCTCATCTCCTGACCG TAAGTCTCCATTTACTTTGTTCAACATTGATTCTTGACGTTAAGTAGCAT TAACAAGTTAGTGCTCGACGACACAGTGCCTTCTTACATCATCACTTGTC ACAACTGTGGCCATGGAAGTGATCTTCGAGGATGCCCTCAGTCTCCATTG ATCATCGAAGGTATATATATTACCAGCCTCTCATTCTTTCAGATGCTTAA ACTGCAAGTAAAGACGGTACTTAAAACAACTTTTTGTATCGTTTCTTATT TTCAGGTGATTCCAAGAACTGCAGTTCGCCAGATGCTGTGAATAAAGTGA GGCAACATATAATAGAACACATGGACTTGTGGCTCTCTGAGTGCCGTGGA GTGCTTCGAAGTTCCATCTAG
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Coding sequence (CDS) from alignment at C1:1456689..1459059-

>BolC1t00264H-R ID=BolC1t00264H-R|Name=BolC1t00264H-R|organism=Brassica oleracea HDEM|type=CDS|length=1470bp|location=Sequence derived from alignment at C1:1456689..1459059- (Brassica oleracea HDEM)
ATGGCGACGACGGCGATAGGCTTTCTGATGCTCTTGTCATACTTCTTGAG
CTTGTCCCATGGATTAGTACAACCCCGTAGGATCTCTCATGGTTTGTCCG
AAAGCGGAAAGTACTTGACGAGAGATGAGCTCTGGTTCAATCAAACCCTT
GACCACTTCTCTCCATATGACCATCGCAGATTCAGACAGAGATACTATGA
ATATCTAGATCATTTACGAGTTCCTGATGGACCTATATTTCTGATGATCT
GCGGCGAAGGCCCTTGCTATGGAATACCAAATGATTATATAAGTGTGTTA
GCGAAGAAGTTCGACGCAGGTGTTGTTTCACTCGAGCATCGTTACTATGG
AAAAAGCTCACCTTTTAACTCATTAGCCACTGAGAATCTCAAGTATCTTT
CATCTAAACAAGCCCTTTCCGATTTAGCTGCTTTTCGTGGATATTACCAG
GCAAGTTTTCTTGAATATTTGAATGTTAAGCTGAATAGAACTGGGAAGGT
TGATAATCCTTGGTTCTTCTTCGGAGCGTCTTACTCTGGAGCTTTGAGCG
CTTGGTTCCGCCTAAAGTTCCCTCATTTGACTTGTGGAAGCCTCGCTAGC
TCTGCAGTTGTTCGTGCTGTCTACGAGTTTCCTGAATTTGACAAACAGCA
GATAGGTGAGTCAGCTGGACCGGAATGTAAAGCTGCACTACAAGAGACTA
ATAAACTCGTGGAACTAGCGCTTAAAGTAAATAATAAGGCTCTGAAAGCT
CTCTTCAATTCCACCGAGCTTGATGTTGATGGTGATTTCTTATACTTCGT
AGCGGATGCACAAGTCATGGCGTTCCAATACGGAAACCCAGATAAGTTAT
GTGTTCCTATGGTGGATGCCAAGAAGAGCGGTGGTGATTTAGTGGAAGCA
TATGCTAAATACGTTAGAGAGTATTGCTTCGGAGTTTTTGGGTTAAGCGC
TAAAACATATAGCAGGAAGCATCTGCTAGATACTGCGATCACCCCAGAGA
GCGCAGATCGTCTGTGGTGGTTCCAAGTTTGCACTGAAGTGGCGTATTTC
CAGGTGGCACCTGCAAACGATAGCATCCGGTCTCATCAAGTCAACACAGA
GTATCATTTGGATCTATGCAAGACTCTGTTTGGTAAAGGTGTTTATCCTG
AAGTCGATGCAACAAACCTGTACTATGGAGGTGATAGAATTGCTGCTACG
AAAATTGTTTTCACGAATGGGTCACAAGATCCATGGCGTCATGCATCCAA
ACAGACCTCATCTCCTGACCTGCCTTCTTACATCATCACTTGTCACAACT
GTGGCCATGGAAGTGATCTTCGAGGATGCCCTCAGTCTCCATTGATCATC
GAAGGTGATTCCAAGAACTGCAGTTCGCCAGATGCTGTGAATAAAGTGAG
GCAACATATAATAGAACACATGGACTTGTGGCTCTCTGAGTGCCGTGGAG
TGCTTCGAAGTTCCATCTAG
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