BolC1t00217H-R (mRNA) Brassica oleracea HDEM

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	BolC1t00217H-R
Unique Name	BolC1t00217H-R
Type	mRNA
Organism	Brassica oleracea HDEM (cv. HDEM, Wild cabbage)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C1	contig	C1:1182580..1185538 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Brassica oleracea HDEM OGS1.0	2018-11-02

Properties


Property Name	Value
Stop	1
Start	1
Cds size	1176

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
BolC1t00217H	BolC1t00217H	Brassica oleracea HDEM	gene	C1 1182580..1185538 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
BolC1t00217H-R	BolC1t00217H-R-P	Brassica oleracea HDEM	polypeptide	C1 1182580..1185538 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BolC1t00217H_exon1	BolC1t00217H_exon1	Brassica oleracea HDEM	exon	C1 1182580..1182806 +
BolC1t00217H_exon2	BolC1t00217H_exon2	Brassica oleracea HDEM	exon	C1 1182907..1182949 +
BolC1t00217H_exon3	BolC1t00217H_exon3	Brassica oleracea HDEM	exon	C1 1183043..1183069 +
BolC1t00217H_exon4	BolC1t00217H_exon4	Brassica oleracea HDEM	exon	C1 1183206..1183304 +
BolC1t00217H_exon5	BolC1t00217H_exon5	Brassica oleracea HDEM	exon	C1 1183384..1183496 +
BolC1t00217H_exon6	BolC1t00217H_exon6	Brassica oleracea HDEM	exon	C1 1184429..1184615 +
BolC1t00217H_exon7	BolC1t00217H_exon7	Brassica oleracea HDEM	exon	C1 1184704..1184805 +
BolC1t00217H_exon8	BolC1t00217H_exon8	Brassica oleracea HDEM	exon	C1 1184881..1184976 +
BolC1t00217H_exon9	BolC1t00217H_exon9	Brassica oleracea HDEM	exon	C1 1185077..1185097 +
BolC1t00217H_exon10	BolC1t00217H_exon10	Brassica oleracea HDEM	exon	C1 1185178..1185327 +
BolC1t00217H_exon11	BolC1t00217H_exon11	Brassica oleracea HDEM	exon	C1 1185428..1185538 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BolC1t00217H	BolC1t00217H	Brassica oleracea HDEM	CDS	C1 1182580..1182806 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at C1:1182580..1185538+
coding sequence from alignment at C1:1182580..1185538+

spliced messenger RNA

>BolC1t00217H-R ID=BolC1t00217H-R|Name=BolC1t00217H-R|organism=Brassica oleracea HDEM|type=mRNA|length=1176bp|location=Sequence derived from alignment at C1:1182580..1185538+ (Brassica oleracea HDEM)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTATGCAGGTTACTGCTTGAAGGAGAAGAAGACATGTGTGAGATG
GGTGGAGAGATACTTCGACGACTGTCTCTGTAACCTGAACGACGAAGTCT
CGTTCGCACTTGGAATCGTTAGCCTTATCTGCTGGGGCGTGGCAGAGATT
CCTCAGATCATTACCAACTTCCGTACAAAGTCCAGTCATGGTGTCTCTCT
GTCTTTCCTCCTCGCTTGGGTCGCCGGTGATATCTTCAATCTCATCGGGT
GTCTTCTTGAACCAGCTACCTTGCCGACTCAGTTCTACACAGCCTTGCTT
TACACAGTGAGCACCGTGGTATTGGTGATCCAGACAATCTACTACGACTA
TATCTACAGACTTTGTACACATAGACGCACCAAGATCTGTCAAAAGGATG
AAGAAGATGAAGAGAAGAGACCATTAAACCCACCGAAGACGATGGGATCT
GCTATTTCCATCCCAGGGGAATCTTACAAAGCTTCTCCTCGGAAAGAGTT
CTATTACACGTCAGCGAGATCATTGGCCGGAAGTGGTACACCGCCTTTAG
GAACATCGTATTTTCGGGTGGCCAAGAGCGGACCTTCGGCCATGACAATA
GATAGTGGTTCTTCCTCGGACGAAGATGAGACAATGTCGACGCTTCCTGT
TGTAACGACTAAGACCATTACCCAACCAAGGCCAATCCCAAGACAGGCTG
GTTTTGGAACGTTCTTAGCCGCATCCGTTAGCCTTCCTCTGCAGGCCAAG
AGTCTAGCGGAAAAATATGCACATGCTTCAAGCAGACGGCTTCTAAATGA
AAGAAGAGTTGAGCATAGTGCATTGGGACAATGGTTAGGATGGCTAATGG
CAGCCATTTACATGGGTGGTCGCATCCCTCAGATCTTGCTCAACATCAAA
CGAGGAAGCGTCGAGGGTTTGAATCCACTTATGTTCATATTCGCACTTGT
AGCCAATGCAACATATGTTGGTAGTATTCTTGTCAGAACAACTGAATGGG
ACAGTATCAAAGCAAATCTCCCTTGGTTGCTTGATGCTATTGTCTGCGTC
CTACTCGATCTATTTATCATATTGCAGTATATCTACTACAAGTATTTCAG
GACGAACAGTTCAAAAGGCGAAGAAGAACATGGCTACGGAGACTATGTGG
AAGCAATCAAAACTTTTGTTTCGTGA

protein sequence of BolC1t00217H-R

>BolC1t00217H-R-P ID=BolC1t00217H-R-P|Name=BolC1t00217H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=392bp
MVYAGYCLKEKKTCVRWVERYFDDCLCNLNDEVSFALGIVSLICWGVAEI
PQIITNFRTKSSHGVSLSFLLAWVAGDIFNLIGCLLEPATLPTQFYTALL
YTVSTVVLVIQTIYYDYIYRLCTHRRTKICQKDEEDEEKRPLNPPKTMGS
AISIPGESYKASPRKEFYYTSARSLAGSGTPPLGTSYFRVAKSGPSAMTI
DSGSSSDEDETMSTLPVVTTKTITQPRPIPRQAGFGTFLAASVSLPLQAK
SLAEKYAHASSRRLLNERRVEHSALGQWLGWLMAAIYMGGRIPQILLNIK
RGSVEGLNPLMFIFALVANATYVGSILVRTTEWDSIKANLPWLLDAIVCV
LLDLFIILQYIYYKYFRTNSSKGEEEHGYGDYVEAIKTFVS.

mRNA from alignment at C1:1182580..1185538+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>BolC1t00217H-R ID=BolC1t00217H-R|Name=BolC1t00217H-R|organism=Brassica oleracea HDEM|type=mRNA|length=2959bp|location=Sequence derived from alignment at C1:1182580..1185538+ (Brassica oleracea HDEM)
ATGGTGTATGCAGGTTACTGCTTGAAGGAGAAGAAGACATGTGTGAGATG
GGTGGAGAGATACTTCGACGACTGTCTCTGTAACCTGAACGACGAAGTCT
CGTTCGCACTTGGAATCGTTAGCCTTATCTGCTGGGGCGTGGCAGAGATT
CCTCAGATCATTACCAACTTCCGTACAAAGTCCAGTCATGGTGTCTCTCT
GTCTTTCCTCCTCGCTTGGGTCGCCGGGTCCGTACACTCTATTATCTTTA
ATTATTATTATATATTTATAAAACTCTAGATCTCTCTAACGTTAGTTATT
TTTACGACTTTTTATCAATCGGTGCAGTGATATCTTCAATCTCATCGGGT
GTCTTCTTGAACCAGCTACCGTAAGTTGCACAACCGTACTCATACTACTA
TAGTTTAGTTTAAATCTTAATTGTTGTTTTCTCACTTTGTCTTTTCCTTT
TTTATTATTGTAGTTGCCGACTCAGTTCTACACAGCCTTGGTAAAATCGC
TGTCTACTCGCCGCATAAACATCTGTCGCCATAAAGCTTACGTGTCCTTT
TTCGCCGCATAAACATCTGTTCGACTGCTTAATTAATTTATTTATAATTT
TATATCTCAACTTCTTCTTTCTTTAGCTTTACACAGTGAGCACCGTGGTA
TTGGTGATCCAGACAATCTACTACGACTATATCTACAGACTTTGTACACA
TAGACGCACCAAGATCTGTCAAAAGGTACTAATTATGTTAATTTTAAAAG
TAATTACATATTGAGTATATATTGTAATACTCTTGGGTGTGAAATTATGT
TAAGGATGAAGAAGATGAAGAGAAGAGACCATTAAACCCACCGAAGACGA
TGGGATCTGCTATTTCCATCCCAGGGGAATCTTACAAAGCTTCTCCTCGG
AAAGAGTTCTATTACACGTACGTATTAGTAGGTCTGGGCATAAAATCCGG
AACCCGAAATCCGAACCGAACCCGAACCAAAAAACTCGATCCGTTATCCG
ATCCGAAATGTAAAAATACCCGAACGGGTTTTGTAGGGTGGTACAAAAAA
TATCCGAACCCAAAGTGTTATTAACCGAACCCGAACGAGTAACCCGAAAA
ATCCGAAATTAATAGTCAATATAAATATTTTGAAATATATATAAGTATTT
TAATTATTAAATTCAATATTTGTGGTAATATGACATATAATAATAAATAT
TAAATTTTTAATAAATGGTTTAAGTACCAATTAATAATAAATAAGTATTT
TATAATTTGCTCATTGAAATAAAAAGTCTATTCTCTATAAAGCAATACAT
ATTGTTTACAAATGATGTTTGTTTTCATGTTTGATTTAACATTTTATTGT
TATTTTATCAATTTTATGTGTGATAAATTAATTTTTATTTAATTTAGATG
CTTTTCTTTATGTTTTGGTTCAAAAATTTTGTTTTTTACTTCGATTATAT
CCGAACCGAACCGATATAACCCGAATCCGTATGATATATGATTACTTTAT
GGGTTTTAGGACGCAATACAATTTTGAACCCGAAGTGTTATTATCCGAAC
CCGGCCCGTACTAATAAAATTTTGGTATGGGACCTAGGAGCGTAAACCCG
AAAACCCGAAAAACCCGATCCGAACGCCAACGGGTACCCGAACGCCCATG
CCAACCCTATTAGTAAAAATGCTTAAATTGAATTCACTCTAACTTGATTA
CGAGTTAAGTTAAAGTTTGTGACAAGCAAATCATTTATCAATGCATTATT
TTACTCCTACACGTACGAATATGTTAATATGATTTATCAGTATATTGTCA
CATGACACTTCACCTTGGTGCTGATTTCCGGCGACTTTTTCCTTTTCAGG
TCAGCGAGATCATTGGCCGGAAGTGGTACACCGCCTTTAGGAACATCGTA
TTTTCGGGTGGCCAAGAGCGGACCTTCGGCCATGACAATAGATAGTGGTT
CTTCCTCGGACGAAGATGAGACAATGTCGACGCTTCCTGTTGTAACGACT
AAGACCATTACCCAACCAAGGCCAATCCCAAGACAGGTTTCTTGATTATA
TTCTTATTGGGAACTAAAAATCACTTTAAGCAGAAGGAACAACGATTGAC
ACGTTGTGTACTTCTTCCTCTCAGGCTGGTTTTGGAACGTTCTTAGCCGC
ATCCGTTAGCCTTCCTCTGCAGGCCAAGAGTCTAGCGGAAAAATATGCAC
ATGCTTCAAGCAGACGGCTTCTAAATGTGCGTACCTACTTATATAATGTT
TCGTTAGCATAAATGAAATTATTTCAAACATTATTTGTTGTCTCGGTATA
GGAAAGAAGAGTTGAGCATAGTGCATTGGGACAATGGTTAGGATGGCTAA
TGGCAGCCATTTACATGGGTGGTCGCATCCCTCAGATCTTGCTCAACGTA
AGCTAATTTTTGACAAGTCTAATTGATCTCTCTTTGCTTATTGTTTATGA
TAGATACTAATCTTATCTTGGTTCGGCCAATAATTTTATAAAACTAGATC
AAACGAGGAAGCGTCGAGGTAAATATCTAAACCAGACAAATCAATAAGCA
CTACAACAGTATATGATCTAATTAACAATATGTTTTGATTATTGGCAGGG
TTTGAATCCACTTATGTTCATATTCGCACTTGTAGCCAATGCAACATATG
TTGGTAGTATTCTTGTCAGAACAACTGAATGGGACAGTATCAAAGCAAAT
CTCCCTTGGTTGCTTGATGCTATTGTCTGCGTCCTACTCGATCTATTTGT
ATCCTTTTTAACCATTTTCACAGCGCCAAATTTTAAAATGACATTGCATT
CCCATTAGGTTTTATTTTGCTACCTTAATTAAAAAAAAATCAAAACAGAT
CATATTGCAGTATATCTACTACAAGTATTTCAGGACGAACAGTTCAAAAG
GCGAAGAAGAACATGGCTACGGAGACTATGTGGAAGCAATCAAAACTTTT
GTTTCGTGA

Coding sequence (CDS) from alignment at C1:1182580..1185538+

>BolC1t00217H-R ID=BolC1t00217H-R|Name=BolC1t00217H-R|organism=Brassica oleracea HDEM|type=CDS|length=1176bp|location=Sequence derived from alignment at C1:1182580..1185538+ (Brassica oleracea HDEM)
ATGGTGTATGCAGGTTACTGCTTGAAGGAGAAGAAGACATGTGTGAGATG
GGTGGAGAGATACTTCGACGACTGTCTCTGTAACCTGAACGACGAAGTCT
CGTTCGCACTTGGAATCGTTAGCCTTATCTGCTGGGGCGTGGCAGAGATT
CCTCAGATCATTACCAACTTCCGTACAAAGTCCAGTCATGGTGTCTCTCT
GTCTTTCCTCCTCGCTTGGGTCGCCGGTGATATCTTCAATCTCATCGGGT
GTCTTCTTGAACCAGCTACCTTGCCGACTCAGTTCTACACAGCCTTGCTT
TACACAGTGAGCACCGTGGTATTGGTGATCCAGACAATCTACTACGACTA
TATCTACAGACTTTGTACACATAGACGCACCAAGATCTGTCAAAAGGATG
AAGAAGATGAAGAGAAGAGACCATTAAACCCACCGAAGACGATGGGATCT
GCTATTTCCATCCCAGGGGAATCTTACAAAGCTTCTCCTCGGAAAGAGTT
CTATTACACGTCAGCGAGATCATTGGCCGGAAGTGGTACACCGCCTTTAG
GAACATCGTATTTTCGGGTGGCCAAGAGCGGACCTTCGGCCATGACAATA
GATAGTGGTTCTTCCTCGGACGAAGATGAGACAATGTCGACGCTTCCTGT
TGTAACGACTAAGACCATTACCCAACCAAGGCCAATCCCAAGACAGGCTG
GTTTTGGAACGTTCTTAGCCGCATCCGTTAGCCTTCCTCTGCAGGCCAAG
AGTCTAGCGGAAAAATATGCACATGCTTCAAGCAGACGGCTTCTAAATGA
AAGAAGAGTTGAGCATAGTGCATTGGGACAATGGTTAGGATGGCTAATGG
CAGCCATTTACATGGGTGGTCGCATCCCTCAGATCTTGCTCAACATCAAA
CGAGGAAGCGTCGAGGGTTTGAATCCACTTATGTTCATATTCGCACTTGT
AGCCAATGCAACATATGTTGGTAGTATTCTTGTCAGAACAACTGAATGGG
ACAGTATCAAAGCAAATCTCCCTTGGTTGCTTGATGCTATTGTCTGCGTC
CTACTCGATCTATTTATCATATTGCAGTATATCTACTACAAGTATTTCAG
GACGAACAGTTCAAAAGGCGAAGAAGAACATGGCTACGGAGACTATGTGG
AAGCAATCAAAACTTTTGTTTCGTGA

Orthology

View orthology data for BolC1t00217H-R