BolC1t00210H-R (mRNA) Brassica oleracea HDEM

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBolC1t00210H-R
Unique NameBolC1t00210H-R
TypemRNA
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C1contigC1:1142156..1143587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica oleracea HDEM OGS1.02018-11-02
Properties
Property NameValue
Stop1
Start1
Cds size756
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC1t00210HBolC1t00210HBrassica oleracea HDEMgeneC1 1142156..1143587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00210H-RBolC1t00210H-R-PBrassica oleracea HDEMpolypeptideC1 1142156..1143587 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00210H_exon1BolC1t00210H_exon1Brassica oleracea HDEMexonC1 1142156..1142438 -
BolC1t00210H_exon2BolC1t00210H_exon2Brassica oleracea HDEMexonC1 1142960..1143063 -
BolC1t00210H_exon3BolC1t00210H_exon3Brassica oleracea HDEMexonC1 1143146..1143358 -
BolC1t00210H_exon4BolC1t00210H_exon4Brassica oleracea HDEMexonC1 1143432..1143587 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00210HBolC1t00210HBrassica oleracea HDEMCDSC1 1142156..1142438 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BolC1t00210H-R ID=BolC1t00210H-R|Name=BolC1t00210H-R|organism=Brassica oleracea HDEM|type=mRNA|length=756bp|location=Sequence derived from alignment at C1:1142156..1143587- (Brassica oleracea HDEM)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGCAGCTCGCTTAGTGTTTTCGTTAAGCCTTCCATCATCCACTCA
CGGAATCAACCGAAAGTTTCAACCTTTTCTCCTAACTCAAACAGTAGCTC
CTTCTCGAGTTCGTGCTCTTCGTTGCCAAGCAACGCCAGAATCTTCCGAA
CCCCAGGAGAAATTGGTGGTGGATAATGGCTCAACTAGTGAAACTTCACC
TGCGACGAAAGAAGCTTCTTCTGGGTTTCCTGAATCACCAAACAGGGATG
TTAATAGAAGAGTCGCTGTTGCTTCTGTTGTTGCGGCTTTGGCCTTGTTT
CTGTCGACAAGGCTTGATTTTGGGATCTCTTTGAAGGATTTAACCGCTTC
AGCGTTGCCTTACGAGGAGGCTTTGTCGAATGGGAAGCCGACAGTTGTTG
AGTTCTATGCTGATTGGTGTGAGGTTTGTCGTGAACTTGCCCCTGATGTT
TACAAAATCGAGCAGCAATACAAGGACAAAGTGAACTTTGTGATGCTAAA
TGTGGACAACACGAAATGGGAGCAAGAGCTGGATGAGTTTGGTGTTGAAG
GCATCCCTCATTTCGCATTCCTCGATAGACAAGGCAACGAGGAAGGCAAT
GTGGTGGGAAGGCTCCCGAGACAGTATCTAGTCGAGAATGTCAACGCCCT
TGCAGCCGGGAAGCAATCAATTCCGCATGCTCGAGCTGTGGGACAGTACA
GTAGCGCCGAGGCCCGTAAGGTGCATCAGGTCACTGATCCCTTAAGCCAT
GGATAG
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protein sequence of BolC1t00210H-R

>BolC1t00210H-R-P ID=BolC1t00210H-R-P|Name=BolC1t00210H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=252bp
MAAARLVFSLSLPSSTHGINRKFQPFLLTQTVAPSRVRALRCQATPESSE
PQEKLVVDNGSTSETSPATKEASSGFPESPNRDVNRRVAVASVVAALALF
LSTRLDFGISLKDLTASALPYEEALSNGKPTVVEFYADWCEVCRELAPDV
YKIEQQYKDKVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDRQGNEEGN
VVGRLPRQYLVENVNALAAGKQSIPHARAVGQYSSAEARKVHQVTDPLSH
G.
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mRNA from alignment at C1:1142156..1143587-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>BolC1t00210H-R ID=BolC1t00210H-R|Name=BolC1t00210H-R|organism=Brassica oleracea HDEM|type=mRNA|length=1432bp|location=Sequence derived from alignment at C1:1142156..1143587- (Brassica oleracea HDEM)
ATGGCAGCAGCTCGCTTAGTGTTTTCGTTAAGCCTTCCATCATCCACTCA
CGGAATCAACCGAAAGTTTCAACCTTTTCTCCTAACTCAAACAGTAGCTC
CTTCTCGAGTTCGTGCTCTTCGTTGCCAAGCAACGCCAGAATCTTCCGAA
CCCCAGGTGAAAAAGTCTCGATTTTGTTATATGGGTCGATGGTGAATTTA
CCTAAAGTAATCTTCTTTTCGTGGTTCAGGAGAAATTGGTGGTGGATAAT
GGCTCAACTAGTGAAACTTCACCTGCGACGAAAGAAGCTTCTTCTGGGTT
TCCTGAATCACCAAACAGGGATGTTAATAGAAGAGTCGCTGTTGCTTCTG
TTGTTGCGGCTTTGGCCTTGTTTCTGTCGACAAGGCTTGATTTTGGGATC
TCTTTGAAGGATTTAACCGCTTCAGCGTTGCCTTACGAGGAGGTTGGACT
CTTTATCATGTTGGTTTTGTTGTCTTATAGATTGAGCTTTATACGAAAGG
CTTTAATGTTCTTTTTTTTGTTAGGCTTTGTCGAATGGGAAGCCGACAGT
TGTTGAGTTCTATGCTGATTGGTGTGAGGTTTGTCGTGAACTTGCCCCTG
ATGTTTACAAAATCGAGCAGCAATACAAGTAAATGCTCTTTTTATATGTG
TGTGTTTATGATCACATTCTTCAAGCTTTTAAATATAGATATGATCAACG
AGCTAGAGCTTTGTAGTTGCATCATGTTGTGTTAGTTTATTGGACTAGGA
AACTTGTTTGGGAAATGAAGATGAGCAAGAGACTTAAAATCTTGTGTTGC
GTTGGTTTAATGGTATTTAGGAACTTCTCTAAGAATGGGTTTGGATATGT
AGTAGCTAATGAACAACAAGGTAGAGCTTGTATTCAAGATTCTGGTTGTA
GAACAGTACCCACTCTTGGTTTAGTGGATATGAGAACTTGTTTAGGAACG
GATTTGGAACTTTTAGATGTTAAGGAACAAGCTAAAGCTTTGAAGACTCT
AGTTGCAGAAGCGAACCATTAAGCTCATGTTAGTTTAATCATTTATAGGT
TAGGGAGCTCTTTAGATGCTCGTTTAGCATTTTACAGGGCGAAATTTTAA
TTGTGTGTGTGTTATTGTCTTAGTTTCATCGCGGTGTTGTGATCTGCAGG
GACAAAGTGAACTTTGTGATGCTAAATGTGGACAACACGAAATGGGAGCA
AGAGCTGGATGAGTTTGGTGTTGAAGGCATCCCTCATTTCGCATTCCTCG
ATAGACAAGGCAACGAGGAAGGCAATGTGGTGGGAAGGCTCCCGAGACAG
TATCTAGTCGAGAATGTCAACGCCCTTGCAGCCGGGAAGCAATCAATTCC
GCATGCTCGAGCTGTGGGACAGTACAGTAGCGCCGAGGCCCGTAAGGTGC
ATCAGGTCACTGATCCCTTAAGCCATGGATAG
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Coding sequence (CDS) from alignment at C1:1142156..1143587-

>BolC1t00210H-R ID=BolC1t00210H-R|Name=BolC1t00210H-R|organism=Brassica oleracea HDEM|type=CDS|length=756bp|location=Sequence derived from alignment at C1:1142156..1143587- (Brassica oleracea HDEM)
ATGGCAGCAGCTCGCTTAGTGTTTTCGTTAAGCCTTCCATCATCCACTCA
CGGAATCAACCGAAAGTTTCAACCTTTTCTCCTAACTCAAACAGTAGCTC
CTTCTCGAGTTCGTGCTCTTCGTTGCCAAGCAACGCCAGAATCTTCCGAA
CCCCAGGAGAAATTGGTGGTGGATAATGGCTCAACTAGTGAAACTTCACC
TGCGACGAAAGAAGCTTCTTCTGGGTTTCCTGAATCACCAAACAGGGATG
TTAATAGAAGAGTCGCTGTTGCTTCTGTTGTTGCGGCTTTGGCCTTGTTT
CTGTCGACAAGGCTTGATTTTGGGATCTCTTTGAAGGATTTAACCGCTTC
AGCGTTGCCTTACGAGGAGGCTTTGTCGAATGGGAAGCCGACAGTTGTTG
AGTTCTATGCTGATTGGTGTGAGGTTTGTCGTGAACTTGCCCCTGATGTT
TACAAAATCGAGCAGCAATACAAGGACAAAGTGAACTTTGTGATGCTAAA
TGTGGACAACACGAAATGGGAGCAAGAGCTGGATGAGTTTGGTGTTGAAG
GCATCCCTCATTTCGCATTCCTCGATAGACAAGGCAACGAGGAAGGCAAT
GTGGTGGGAAGGCTCCCGAGACAGTATCTAGTCGAGAATGTCAACGCCCT
TGCAGCCGGGAAGCAATCAATTCCGCATGCTCGAGCTGTGGGACAGTACA
GTAGCGCCGAGGCCCGTAAGGTGCATCAGGTCACTGATCCCTTAAGCCAT
GGATAG
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