BolC1t00045H-R (mRNA) Brassica oleracea HDEM

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBolC1t00045H-R
Unique NameBolC1t00045H-R
TypemRNA
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C1contigC1:197133..198038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica oleracea HDEM OGS1.02018-11-02
Properties
Property NameValue
Stop1
Start1
Cds size435
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC1t00045HBolC1t00045HBrassica oleracea HDEMgeneC1 197133..198038 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00045H-RBolC1t00045H-R-PBrassica oleracea HDEMpolypeptideC1 197133..198038 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00045H_exon1BolC1t00045H_exon1Brassica oleracea HDEMexonC1 197133..197209 +
BolC1t00045H_exon2BolC1t00045H_exon2Brassica oleracea HDEMexonC1 197305..197338 +
BolC1t00045H_exon3BolC1t00045H_exon3Brassica oleracea HDEMexonC1 197421..197495 +
BolC1t00045H_exon4BolC1t00045H_exon4Brassica oleracea HDEMexonC1 197682..197816 +
BolC1t00045H_exon5BolC1t00045H_exon5Brassica oleracea HDEMexonC1 197925..198038 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00045HBolC1t00045HBrassica oleracea HDEMCDSC1 197133..197209 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BolC1t00045H-R ID=BolC1t00045H-R|Name=BolC1t00045H-R|organism=Brassica oleracea HDEM|type=mRNA|length=435bp|location=Sequence derived from alignment at C1:197133..198038+ (Brassica oleracea HDEM)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATAGCTTAACAAACTTGTATAGGCAGGCCTCAGTTAAACCAGAATA
CATCATATGGGCTTTTTATCATAATGGCTCCTCGATTCGCTCCTCCGTCC
AAGTCAACATGGCGCCGAAGAAGGACAAGGTCCCGCCGCCGTCATCCAAG
CCAGCCAAATCTGGAGGTGGAAAACAAAAGAAGAAGAAGTGGAGCAAGGG
AAAGCAAAAGGAGAAGGTGAACAACATGGTGTTGTTTGATCAGGCTACTT
ACGACAAGCTTCTCACTGAAGCTCCCAAGTTCAAGCTCATCACTCCTTCC
ATTCTCTCCGACCGTATGAGGATTAACGGATCTCTAGCAAGGAGGGCGAT
TAGGGAGCTGATGGCGAAAGGTGTGATCAGGATGGTTGCTGCTCACTCTA
GCCAGCAGATCTACACTCGTGCCACCAACACTTGA
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protein sequence of BolC1t00045H-R

>BolC1t00045H-R-P ID=BolC1t00045H-R-P|Name=BolC1t00045H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=145bp
MDSLTNLYRQASVKPEYIIWAFYHNGSSIRSSVQVNMAPKKDKVPPPSSK
PAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKLITPS
ILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT.
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mRNA from alignment at C1:197133..198038+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BolC1t00045H-R ID=BolC1t00045H-R|Name=BolC1t00045H-R|organism=Brassica oleracea HDEM|type=mRNA|length=906bp|location=Sequence derived from alignment at C1:197133..198038+ (Brassica oleracea HDEM)
ATGGATAGCTTAACAAACTTGTATAGGCAGGCCTCAGTTAAACCAGAATA
CATCATATGGGCTTTTTATCATAATGGGTCCGTATAGATTACGTGGAAAC
CCTAGAGATTATAAGGGAGGGAAAACCCTAAGTTAGGTTTGTGCCTTAGC
ATAACTAATCGTCATCTTTCAGCTCCTCGATTCGCTCCTCCGTCCAAGTC
AACATGGTATCACTAATCTCTTTCTCTCCATGTCGAAGCAGATCTATTAA
ACTTGTGTGAATCGTTATATTCGTGTCACTTGTTACAGGCGCCGAAGAAG
GACAAGGTCCCGCCGCCGTCATCCAAGCCAGCCAAATCTGGAGGTGGAAA
ACAAAAGAAGAAGGTTTGTTTCCTCAACCGGACATAATTTATGTTTGGTT
AGAATGTGTAAAGAAGATCTTGTTCTTATCATTTCTGTGAACTGTGGCGT
TAAGTTAGTCTTTTTAACATTTCTGTTGAAGACTTTGATTTGCTCAATTT
GTTGTTGGTTTGGTTAAACAATTAAAAAAAAAAAAAAAAAAAAAAACAGA
AGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACATGGTGTTGTTT
GATCAGGCTACTTACGACAAGCTTCTCACTGAAGCTCCCAAGTTCAAGCT
CATCACTCCTTCCATTCTCTCCGACCGTATGAGGGTATGCATTTACTTTT
GTCTCTTTAATTTACTACTAATCCATGTCTCTAAATCATATTAGTAATAT
GATCTAAGCATAATAACACTGTGATGATCCATATTGCAACAGATTAACGG
ATCTCTAGCAAGGAGGGCGATTAGGGAGCTGATGGCGAAAGGTGTGATCA
GGATGGTTGCTGCTCACTCTAGCCAGCAGATCTACACTCGTGCCACCAAC
ACTTGA
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Coding sequence (CDS) from alignment at C1:197133..198038+

>BolC1t00045H-R ID=BolC1t00045H-R|Name=BolC1t00045H-R|organism=Brassica oleracea HDEM|type=CDS|length=435bp|location=Sequence derived from alignment at C1:197133..198038+ (Brassica oleracea HDEM)
ATGGATAGCTTAACAAACTTGTATAGGCAGGCCTCAGTTAAACCAGAATA
CATCATATGGGCTTTTTATCATAATGGCTCCTCGATTCGCTCCTCCGTCC
AAGTCAACATGGCGCCGAAGAAGGACAAGGTCCCGCCGCCGTCATCCAAG
CCAGCCAAATCTGGAGGTGGAAAACAAAAGAAGAAGAAGTGGAGCAAGGG
AAAGCAAAAGGAGAAGGTGAACAACATGGTGTTGTTTGATCAGGCTACTT
ACGACAAGCTTCTCACTGAAGCTCCCAAGTTCAAGCTCATCACTCCTTCC
ATTCTCTCCGACCGTATGAGGATTAACGGATCTCTAGCAAGGAGGGCGAT
TAGGGAGCTGATGGCGAAAGGTGTGATCAGGATGGTTGCTGCTCACTCTA
GCCAGCAGATCTACACTCGTGCCACCAACACTTGA
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