BolSC56t61237H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolSC56t61237H-R
Unique NameBolSC56t61237H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length35
Homology
[Close]
BLAST of BolSC56t61237H-R vs. GenBank_protein
Match: VDD66009.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 67.8 bits (164), Expect = 4.750e-14
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0 
Query:    1 MEFAPRNIATPTPHVNPTSLLSILIRSQRGSKSK 34
            MEFAPRNIATPTPHVNPTSLLSILIRSQRGSKSK
Sbjct:    1 MEFAPRNIATPTPHVNPTSLLSILIRSQRGSKSK 34
[Close]
BLAST of BolSC56t61237H-R vs. GenBank_protein
Match: VDD65268.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 61.6 bits (148), Expect = 1.320e-11
Identity = 32/34 (94.12%), Postives = 32/34 (94.12%), Query Frame = 0 
Query:    1 MEFAPRNIATPTPHVNPTSLLSILIRSQRGSKSK 34
            MEFAPRNIAT  PHVNPTSLLSILIRSQRGSKSK
Sbjct:    1 MEFAPRNIATLPPHVNPTSLLSILIRSQRGSKSK 34
The following BLAST results are available for this feature:
BLAST of BolSC56t61237H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 2
Match NameE-valueIdentityDescription
VDD66009.14.750e-14100.00unnamed protein product [Brassica oleracea][more]
VDD65268.11.320e-1194.12unnamed protein product [Brassica oleracea][more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Boleracea_scaffold_56contigBoleracea_scaffold_56:8558..8662 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolSC56t61237H-RBolSC56t61237H-RBrassica oleracea HDEMmRNABoleracea_scaffold_56 8558..8662 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolSC56t61237H-R-P ID=BolSC56t61237H-R-P|Name=BolSC56t61237H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=35bp
MEFAPRNIATPTPHVNPTSLLSILIRSQRGSKSK.
back to top