BolC9t59924H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolC9t59924H-R
Unique NameBolC9t59924H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length84
Homology
BLAST of BolC9t59924H-R vs. GenBank_protein
Match: VDD34601.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 182 bits (463), Expect = 2.920e-58
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0
Query:    1 MSLSKKYILIAFAFTIFFAMSIVRCTDIVSGTTLKFIKYNMCYGPCDDKGVCEPYCHTKKGPIRGDFAGKRKGYLGLCCCDEH 83
            MSLSKKYILIAFAFTIFFAMSIVRCTDIVSGTTLKFIKYNMCYGPCDDKGVCEPYCHTKKGPIRGDFAGKRKGYLGLCCCDEH
Sbjct:    1 MSLSKKYILIAFAFTIFFAMSIVRCTDIVSGTTLKFIKYNMCYGPCDDKGVCEPYCHTKKGPIRGDFAGKRKGYLGLCCCDEH 83          
BLAST of BolC9t59924H-R vs. GenBank_protein
Match: CAF1790679.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 144 bits (362), Expect = 6.940e-43
Identity = 67/83 (80.72%), Postives = 72/83 (86.75%), Query Frame = 0
Query:    1 MSLSKKYILIAFAFTIFFAMSIVRCTDIVSGTTLKFIKYNMCYGPCDDKGVCEPYCHTKKGPIRGDFAGKRKGYLGLCCCDEH 83
            MSLSKKYILIAF FT+FFAMSIVRCTDIVS      +KYN+CYGPCDDKGVC P+C +KKG IRGD AGKRKGYLGLCCCDEH
Sbjct:    1 MSLSKKYILIAFVFTLFFAMSIVRCTDIVSDFG---VKYNVCYGPCDDKGVCRPFCSSKKGLIRGDCAGKRKGYLGLCCCDEH 80          
BLAST of BolC9t59924H-R vs. GenBank_protein
Match: KAG5377843.1 (hypothetical protein IGI04_025685 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 137 bits (346), Expect = 1.920e-40
Identity = 66/83 (79.52%), Postives = 68/83 (81.93%), Query Frame = 0
Query:    1 MSLSKKYILIAFAFTIFFAMSIVRCTDIVSGTTLKFIKYNMCYGPCDDKGVCEPYCHTKKGPIRGDFAGKRKGYLGLCCCDEH 83
            MSLSKKYILIAF FTIFFAMSIVRCTDIVS      IKYNMCYGPCDDKGVCEP+C  KKG  RGD  GK K YLG+CCCDEH
Sbjct:    1 MSLSKKYILIAFVFTIFFAMSIVRCTDIVSDFG---IKYNMCYGPCDDKGVCEPFCSAKKGLKRGDCVGKAKDYLGVCCCDEH 80          
BLAST of BolC9t59924H-R vs. GenBank_protein
Match: VDC95829.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 135 bits (339), Expect = 2.240e-39
Identity = 63/83 (75.90%), Postives = 68/83 (81.93%), Query Frame = 0
Query:    1 MSLSKKYILIAFAFTIFFAMSIVRCTDIVSGTTLKFIKYNMCYGPCDDKGVCEPYCHTKKGPIRGDFAGKRKGYLGLCCCDEH 83
            MSLSKKYILIAF FT+FFAMSIVRCTDIVS      +KYN+CYGPCDDKGVCEP+C  KKG  RGD  GK K YLG+CCCDEH
Sbjct:    1 MSLSKKYILIAFVFTLFFAMSIVRCTDIVSNFG---VKYNVCYGPCDDKGVCEPFCSAKKGLKRGDCVGKGKDYLGVCCCDEH 80          
BLAST of BolC9t59924H-R vs. GenBank_protein
Match: CAF2359939.1 (unnamed protein product [Brassica napus] >CDY67525.1 BnaAnng24550D [Brassica napus] >VDD20979.1 unnamed protein product [Brassica rapa])

HSP 1 Score: 125 bits (315), Expect = 1.030e-35
Identity = 59/82 (71.95%), Postives = 65/82 (79.27%), Query Frame = 0
Query:    1 MSLSKKYILIAFAFTIFFAMSIVRCTDIVSGTTLKFIKYNMCYGPCDDKGVCEPYCHTKKGPIRGDFAGKRKGYLGLCCCDE 82
            MSLSKK  LIAF FT+FFAMSIVRCTDIVS      +KYN+CYGPCDDKGVC P+C +KKG   GD  GK KGYLG+CCCDE
Sbjct:    1 MSLSKKCTLIAFVFTLFFAMSIVRCTDIVSDFG---VKYNVCYGPCDDKGVCRPFCSSKKGLKMGDCVGKEKGYLGVCCCDE 79          
BLAST of BolC9t59924H-R vs. GenBank_protein
Match: KAG5377371.1 (hypothetical protein IGI04_041967 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 121 bits (304), Expect = 4.130e-34
Identity = 59/83 (71.08%), Postives = 64/83 (77.11%), Query Frame = 0
Query:    1 MSLSKKYILIAFAFTIFFAMSIVRCTDIVSGTTLKFIKYNMCYGPCDDKGVCEPYCHTKKGPIRGDFAGKRKGYLGLCCCDEH 83
            MSLSKK ILIAF FT+FFAMSIVRCTDIVS      +KYNMCYGPCDDKGVC P+C++KKGP RGD  G      G CCCDEH
Sbjct:    1 MSLSKKCILIAFVFTLFFAMSIVRCTDIVSDFG---VKYNMCYGPCDDKGVCRPFCYSKKGPKRGDCVG------GTCCCDEH 74          
BLAST of BolC9t59924H-R vs. GenBank_protein
Match: CAF2084040.1 (unnamed protein product [Brassica napus] >VDC66048.1 unnamed protein product [Brassica rapa])

HSP 1 Score: 120 bits (302), Expect = 8.330e-34
Identity = 59/83 (71.08%), Postives = 63/83 (75.90%), Query Frame = 0
Query:    1 MSLSKKYILIAFAFTIFFAMSIVRCTDIVSGTTLKFIKYNMCYGPCDDKGVCEPYCHTKKGPIRGDFAGKRKGYLGLCCCDEH 83
            MSLSKKYILIAF FT+FFAMSIVRCTDIVS      +KYN+CYGPCDDKG C PYCHTKKG I GD         G+CCCDEH
Sbjct:    1 MSLSKKYILIAFVFTLFFAMSIVRCTDIVSDFG---VKYNVCYGPCDDKGKCWPYCHTKKGLISGDCVS------GICCCDEH 74          
BLAST of BolC9t59924H-R vs. GenBank_protein
Match: VDD21026.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 120 bits (301), Expect = 1.320e-33
Identity = 58/83 (69.88%), Postives = 64/83 (77.11%), Query Frame = 0
Query:    1 MSLSKKYILIAFAFTIFFAMSIVRCTDIVSGTTLKFIKYNMCYGPCDDKGVCEPYCHTKKGPIRGDFAGKRKGYLGLCCCDEH 83
            MSLSKK ILIAF FT+FFAMSIVRCTDIVS      +KYN+CYGPCDDKGVC P+C++KKGP RGD  G      G CCCDEH
Sbjct:    1 MSLSKKCILIAFVFTLFFAMSIVRCTDIVSDFG---VKYNLCYGPCDDKGVCRPFCYSKKGPKRGDCVG------GTCCCDEH 74          
BLAST of BolC9t59924H-R vs. GenBank_protein
Match: CAF2359904.1 (unnamed protein product [Brassica napus] >CDY67526.1 BnaAnng24560D [Brassica napus])

HSP 1 Score: 117 bits (293), Expect = 2.080e-32
Identity = 57/83 (68.67%), Postives = 64/83 (77.11%), Query Frame = 0
Query:    1 MSLSKKYILIAFAFTIFFAMSIVRCTDIVSGTTLKFIKYNMCYGPCDDKGVCEPYCHTKKGPIRGDFAGKRKGYLGLCCCDEH 83
            MS+S+K ILIAF FT+FFAMSIV CTDIVS   +K   YN+CYGPCDDKGVCEP+C+TKKGPIRGD  G      G CCC EH
Sbjct:    1 MSISEKCILIAFVFTLFFAMSIVSCTDIVSDFGVKKA-YNLCYGPCDDKGVCEPFCYTKKGPIRGDCVG------GTCCCAEH 76          
BLAST of BolC9t59924H-R vs. GenBank_protein
Match: CAF1790620.1 (unnamed protein product [Brassica napus] >CDY66517.1 BnaCnng51150D [Brassica napus])

HSP 1 Score: 117 bits (292), Expect = 2.790e-32
Identity = 57/83 (68.67%), Postives = 62/83 (74.70%), Query Frame = 0
Query:    1 MSLSKKYILIAFAFTIFFAMSIVRCTDIVSGTTLKFIKYNMCYGPCDDKGVCEPYCHTKKGPIRGDFAGKRKGYLGLCCCDEH 83
            MSLSKK I IAF FT+FFAMSIVRCTD VS      +KYN+CYGPCDDKG+C PYCHTKKG IRGD         G+CCCDEH
Sbjct:    1 MSLSKKCISIAFVFTLFFAMSIVRCTDTVSDFG---VKYNVCYGPCDDKGMCYPYCHTKKGLIRGDCVS------GICCCDEH 74          
The following BLAST results are available for this feature:
BLAST of BolC9t59924H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 16
Match NameE-valueIdentityDescription
VDD34601.12.920e-58100.00unnamed protein product [Brassica oleracea][more]
CAF1790679.16.940e-4380.72unnamed protein product [Brassica napus][more]
KAG5377843.11.920e-4079.52hypothetical protein IGI04_025685 [Brassica rapa s... [more]
VDC95829.12.240e-3975.90unnamed protein product [Brassica rapa][more]
CAF2359939.11.030e-3571.95unnamed protein product [Brassica napus] >CDY67525... [more]
KAG5377371.14.130e-3471.08hypothetical protein IGI04_041967 [Brassica rapa s... [more]
CAF2084040.18.330e-3471.08unnamed protein product [Brassica napus] >VDC66048... [more]
VDD21026.11.320e-3369.88unnamed protein product [Brassica rapa][more]
CAF2359904.12.080e-3268.67unnamed protein product [Brassica napus] >CDY67526... [more]
CAF1790620.12.790e-3268.67unnamed protein product [Brassica napus] >CDY66517... [more]

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InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..83
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..25
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C9contigC9:61511427..61511757 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC9t59924H-RBolC9t59924H-RBrassica oleracea HDEMmRNAC9 61511427..61511757 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolC9t59924H-R-P ID=BolC9t59924H-R-P|Name=BolC9t59924H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=84bp
MSLSKKYILIAFAFTIFFAMSIVRCTDIVSGTTLKFIKYNMCYGPCDDKG
VCEPYCHTKKGPIRGDFAGKRKGYLGLCCCDEH.
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