BolC9t59866H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	BolC9t59866H-R
Unique Name	BolC9t59866H-R-P
Type	polypeptide
Organism	Brassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length	412

Homology

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BLAST of BolC9t59866H-R vs. GenBank_protein
Match: XP_013611870.1 (PREDICTED: RING-H2 finger protein ATL43 [Brassica oleracea var. oleracea] >VDD34543.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 748 bits (1931), Expect = 3.420e-271
Identity = 411/411 (100.00%), Postives = 411/411 (100.00%), Query Frame = 0

Query:    1 MSSPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXXVGRKTSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEEKTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 411
            MSSPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXXVGRKTSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEEKTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV
Sbjct:    1 MSSPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXXVGRKTSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEEKTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 411

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BLAST of BolC9t59866H-R vs. GenBank_protein
Match: KAF3501112.1 (hypothetical protein F2Q69_00045494 [Brassica cretica])

HSP 1 Score: 744 bits (1920), Expect = 1.620e-269
Identity = 409/411 (99.51%), Postives = 409/411 (99.51%), Query Frame = 0

Query:    1 MSSPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXXVGRKTSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEEKTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 411
            MSSPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRFAT RYYGGGGXXXXXVGRK SGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEEKTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV
Sbjct:    1 MSSPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRFATLRYYGGGGXXXXXVGRKNSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEEKTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 411

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BLAST of BolC9t59866H-R vs. GenBank_protein
Match: XP_013728514.1 (RING-H2 finger protein ATL43-like [Brassica napus] >CAF1790106.1 unnamed protein product [Brassica napus])

HSP 1 Score: 743 bits (1919), Expect = 2.390e-269
Identity = 411/412 (99.76%), Postives = 411/412 (99.76%), Query Frame = 0

Query:    1 MSSPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXXVGRKTSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXX-TGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEEKTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 411
            MSSPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXXVGRKTSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXX TGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEEKTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV
Sbjct:    1 MSSPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXXVGRKTSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEEKTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 412

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BLAST of BolC9t59866H-R vs. GenBank_protein
Match: KAF2539817.1 (hypothetical protein F2Q68_00023268 [Brassica cretica] >KAF3566161.1 hypothetical protein DY000_02019700 [Brassica cretica])

HSP 1 Score: 737 bits (1902), Expect = 9.300e-267
Identity = 408/412 (99.03%), Postives = 408/412 (99.03%), Query Frame = 0

Query:    1 MSSPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXXVGRKTSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEE-KTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 411
            MSSPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXX  RK SGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEE KTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV
Sbjct:    1 MSSPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXXXXRKNSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEEEKTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 412

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BLAST of BolC9t59866H-R vs. GenBank_protein
Match: RID42775.1 (hypothetical protein BRARA_J02636 [Brassica rapa])

HSP 1 Score: 698 bits (1801), Expect = 1.680e-251
Identity = 388/410 (94.63%), Postives = 393/410 (95.85%), Query Frame = 0

Query:    3 SPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXXVGRKTSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEE-KTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 411
            S +SSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXX XXXSPLQRHNVTSSFMPGIAVVIAVLT VFSLTFL+LLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXX GRK SGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFD VSRISGRHSSAGERASRLN+V+T SS        RRSLDSSLRINDGEE KT+SVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSA SAV
Sbjct:    2 SSASSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXXXXXSPLQRHNVTSSFMPGIAVVIAVLTVVFSLTFLLLLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXXXGRKNSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDLVSRISGRHSSAGERASRLNDVKTLSS-------FRRSLDSSLRINDGEEEKTESVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSAGSAV 404

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BLAST of BolC9t59866H-R vs. GenBank_protein
Match: VDD20865.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 689 bits (1779), Expect = 3.370e-248
Identity = 384/410 (93.66%), Postives = 385/410 (93.90%), Query Frame = 0

Query:    3 SPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXXVGRKTSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEE-KTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 411
            S SSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXX XXXSPLQRHNVTSSFMPGIAVVIAVLT VFSLTFL+LLYVKHCKRRNGYVN TQRFATS    GGG     VGRK SGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVR  SS        RRSLDSSLRINDGEE KTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV
Sbjct:    2 SSSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXXXXXSPLQRHNVTSSFMPGIAVVIAVLTVVFSLTFLLLLYVKHCKRRNGYVNQTQRFATSH---GGGYGGVGVGRKNSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVRKFSS-------FRRSLDSSLRINDGEEEKTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 401

[Close]

BLAST of BolC9t59866H-R vs. GenBank_protein
Match: XP_013715689.1 (RING-H2 finger protein ATL43-like [Brassica napus])

HSP 1 Score: 689 bits (1778), Expect = 4.780e-248
Identity = 383/410 (93.41%), Postives = 385/410 (93.90%), Query Frame = 0

Query:    3 SPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXXVGRKTSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEE-KTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 411
            S SSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXX XXXSPLQRHNVTSSFMPGIAVVIAVLT VFSLTFL+LLYVKHCKRRNGYVN TQRFATS    GGG     VGRK SGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFH+ECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVR  SS        RRSLDSSLRINDGEE KTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV
Sbjct:    2 SSSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXXXXXSPLQRHNVTSSFMPGIAVVIAVLTVVFSLTFLLLLYVKHCKRRNGYVNQTQRFATSH---GGGYGGVGVGRKNSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHIECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVRKFSS-------FRRSLDSSLRINDGEEEKTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 401

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BLAST of BolC9t59866H-R vs. GenBank_protein
Match: CAF2359044.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 681 bits (1757), Expect = 8.130e-245
Identity = 380/409 (92.91%), Postives = 383/409 (93.64%), Query Frame = 0

Query:    3 SPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXXVGRKTSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEEKTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 411
            S SSSLLLVSLLSLFLN+SLADNDRYNTT          XX XXXSPLQRHNVTSSFMPGIAVVIAVLT VFSLTFL+LLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXX GRK SGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLN+VR  SS        RRSLDSSLRINDGEEKTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVI GRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV
Sbjct:    2 SSSSSLLLVSLLSLFLNSSLADNDRYNTTXXXXXXXXXXXXXXXXSPLQRHNVTSSFMPGIAVVIAVLTVVFSLTFLLLLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXXXGRKNSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNDVRKFSS-------FRRSLDSSLRINDGEEKTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVISGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 403

[Close]

BLAST of BolC9t59866H-R vs. GenBank_protein
Match: XP_033137777.1 (RING-H2 finger protein ATL43 [Brassica rapa])

HSP 1 Score: 679 bits (1751), Expect = 6.920e-244
Identity = 381/410 (92.93%), Postives = 384/410 (93.66%), Query Frame = 0

Query:    3 SPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXXVGRKTSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEE-KTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 411
            S SSSLLLVSLLSLFLN+SLADNDRYNTT          XX XXXSPLQRHNVTSSFMPGIAVVIAVLT VFSLTFL+LLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXX GRK SGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLN+VR  SS        RRSLDSSLRINDGEE KTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV
Sbjct:    2 SSSSSLLLVSLLSLFLNSSLADNDRYNTTXXXXXXXXXXXXXXXXSPLQRHNVTSSFMPGIAVVIAVLTVVFSLTFLLLLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXXXGRKNSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNDVRKLSS-------FRRSLDSSLRINDGEEEKTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 404

[Close]

BLAST of BolC9t59866H-R vs. GenBank_protein
Match: KAF8115166.1 (hypothetical protein N665_0029s0012 [Sinapis alba])

HSP 1 Score: 676 bits (1743), Expect = 1.480e-242
Identity = 378/417 (90.65%), Postives = 384/417 (92.09%), Query Frame = 0

Query:    2 SSPSSS-LLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNG--YVNDTQRFATSRY---YGGGGXXXXXVGRKTSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXX-TGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEEKTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 411
            SSPSSS LLLVSLLSLFLN SLADNDRYNTTAVVIMNPTT   L   SPLQRH +TSSFMPGIAVVIAVLTAVFSLTFL+LLYVKHCKRRNG  YVN TQRFATSRY   YGGGG     VGRK SGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSN   XXXXXXXX TGST FDFVSRISGRHSSAGERASRLNEVRTSSSSKS PIS RRSLDSSLRINDG+EKT+SVAV  GCFDR+Q RKDGLLLN NRESFEARFEHRIIISGGNRDQRWSEVRP+DLLYLRSEMILSDCRKLAAAEDGREVI GRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV
Sbjct:    3 SSPSSSSLLLVSLLSLFLNTSLADNDRYNTTAVVIMNPTTSPPLPPPSPLQRHKITSSFMPGIAVVIAVLTAVFSLTFLLLLYVKHCKRRNGSGYVNHTQRFATSRYGGGYGGGG-----VGRKNSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNRQEXXXXXXXXXTGSTGFDFVSRISGRHSSAGERASRLNEVRTSSSSKSNPISFRRSLDSSLRINDGDEKTESVAV--GCFDRSQ-RKDGLLLNPNRESFEARFEHRIIISGGNRDQRWSEVRPSDLLYLRSEMILSDCRKLAAAEDGREVISGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 411

The following BLAST results are available for this feature:

BLAST of BolC9t59866H-R vs. GenBank_protein

BLAST of BolC9t59866H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20


Match Name	E-value	Identity	Description
XP_013611870.1	3.420e-271	100.00	PREDICTED: RING-H2 finger protein ATL43 [Brassica ...	[more]
KAF3501112.1	1.620e-269	99.51	hypothetical protein F2Q69_00045494 [Brassica cret...	[more]
XP_013728514.1	2.390e-269	99.76	RING-H2 finger protein ATL43-like [Brassica napus]...	[more]
KAF2539817.1	9.300e-267	99.03	hypothetical protein F2Q68_00023268 [Brassica cret...	[more]
RID42775.1	1.680e-251	94.63	hypothetical protein BRARA_J02636 [Brassica rapa]	[more]
VDD20865.1	3.370e-248	93.66	unnamed protein product [Brassica rapa]	[more]
XP_013715689.1	4.780e-248	93.41	RING-H2 finger protein ATL43-like [Brassica napus]	[more]
CAF2359044.1	8.130e-245	92.91	unnamed protein product [Brassica napus]	[more]
XP_033137777.1	6.920e-244	92.93	RING-H2 finger protein ATL43 [Brassica rapa]	[more]
KAF8115166.1	1.480e-242	90.65	hypothetical protein N665_0029s0012 [Sinapis alba]	[more]

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GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016740	transferase activity

InterPro

Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 148..189 e-value: 3.3E-6 score: 36.6
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 147..190 e-value: 9.0E-13 score: 48.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 148..190 score: 12.504031
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 122..197 e-value: 2.1E-21 score: 76.9
None	No IPR available	PANTHER	PTHR46539	E3 UBIQUITIN-PROTEIN LIGASE ATL42	coord: 32..407
None	No IPR available	PANTHER	PTHR46539:SF2	RING-H2 FINGER PROTEIN ATL43	coord: 32..407
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 19..23
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 85..411
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..23
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 7..18
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 24..58
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..6
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 59..84
None	No IPR available	CDD	cd16461	RING-H2_EL5_like	coord: 147..190 e-value: 3.93599E-18 score: 75.4243
None	No IPR available	SIGNALP_GRAM_POSITIVE	SignalP-TM	SignalP-TM	coord: 1..23 score: 0.671
None	No IPR available	SIGNALP_GRAM_NEGATIVE	SignalP-TM	SignalP-TM	coord: 1..23 score: 0.659
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..23 score: 0.887
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 129..195
None	No IPR available	TMHMM	TMhelix		coord: 62..84

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C9	contig	C9:61241225..61242460 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
Interproscan on OGS1.0	2022-03-19
Blast2go on OGS1.0	2022-03-19
Diamond on OGS1.0 vs NR	2022-03-19
Brassica oleracea HDEM OGS1.0	2018-11-02

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
BolC9t59866H-R	BolC9t59866H-R	Brassica oleracea HDEM	mRNA	C9 61241225..61242460 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>BolC9t59866H-R-P ID=BolC9t59866H-R-P|Name=BolC9t59866H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=412bp
MSSPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPPPLPPPSPL
QRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRF
ATSRYYGGGGYGGGGVGRKTSGIDRSVIESLPVFRFGALSGHKEGLECAV
CLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILL
ISDCNSWFELRLSNNRREESNNNNNTGSTRFDFVSRISGRHSSAGERASR
LNEVRTSSSSKSIPISIRRSLDSSLRINDGEEKTDSVAVAVGCFDRNQQR
KDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILS
DCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLA
WSHRPSASSAV.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

Vocabulary: **Biological Process**
Term	Definition
GO:0016567	protein ubiquitination

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding
GO:0016740	transferase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Orthology

View orthology data for BolC9t59866H-R-P