BolC9t59866H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolC9t59866H-R
Unique NameBolC9t59866H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length412
Homology
BLAST of BolC9t59866H-R vs. GenBank_protein
Match: XP_013611870.1 (PREDICTED: RING-H2 finger protein ATL43 [Brassica oleracea var. oleracea] >VDD34543.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 748 bits (1931), Expect = 3.420e-271
Identity = 411/411 (100.00%), Postives = 411/411 (100.00%), Query Frame = 0
Query:    1 MSSPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXXVGRKTSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEEKTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 411
            MSSPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXXVGRKTSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEEKTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV
Sbjct:    1 MSSPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXXVGRKTSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEEKTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 411          
BLAST of BolC9t59866H-R vs. GenBank_protein
Match: KAF3501112.1 (hypothetical protein F2Q69_00045494 [Brassica cretica])

HSP 1 Score: 744 bits (1920), Expect = 1.620e-269
Identity = 409/411 (99.51%), Postives = 409/411 (99.51%), Query Frame = 0
Query:    1 MSSPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXXVGRKTSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEEKTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 411
            MSSPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRFAT RYYGGGGXXXXXVGRK SGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEEKTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV
Sbjct:    1 MSSPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRFATLRYYGGGGXXXXXVGRKNSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEEKTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 411          
BLAST of BolC9t59866H-R vs. GenBank_protein
Match: XP_013728514.1 (RING-H2 finger protein ATL43-like [Brassica napus] >CAF1790106.1 unnamed protein product [Brassica napus])

HSP 1 Score: 743 bits (1919), Expect = 2.390e-269
Identity = 411/412 (99.76%), Postives = 411/412 (99.76%), Query Frame = 0
Query:    1 MSSPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXXVGRKTSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXX-TGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEEKTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 411
            MSSPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXXVGRKTSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXX TGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEEKTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV
Sbjct:    1 MSSPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXXVGRKTSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEEKTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 412          
BLAST of BolC9t59866H-R vs. GenBank_protein
Match: KAF2539817.1 (hypothetical protein F2Q68_00023268 [Brassica cretica] >KAF3566161.1 hypothetical protein DY000_02019700 [Brassica cretica])

HSP 1 Score: 737 bits (1902), Expect = 9.300e-267
Identity = 408/412 (99.03%), Postives = 408/412 (99.03%), Query Frame = 0
Query:    1 MSSPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXXVGRKTSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEE-KTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 411
            MSSPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXX  RK SGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEE KTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV
Sbjct:    1 MSSPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXXXXRKNSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEEEKTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 412          
BLAST of BolC9t59866H-R vs. GenBank_protein
Match: RID42775.1 (hypothetical protein BRARA_J02636 [Brassica rapa])

HSP 1 Score: 698 bits (1801), Expect = 1.680e-251
Identity = 388/410 (94.63%), Postives = 393/410 (95.85%), Query Frame = 0
Query:    3 SPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXXVGRKTSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEE-KTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 411
            S +SSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXX XXXSPLQRHNVTSSFMPGIAVVIAVLT VFSLTFL+LLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXX GRK SGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFD VSRISGRHSSAGERASRLN+V+T SS        RRSLDSSLRINDGEE KT+SVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSA SAV
Sbjct:    2 SSASSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXXXXXSPLQRHNVTSSFMPGIAVVIAVLTVVFSLTFLLLLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXXXGRKNSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDLVSRISGRHSSAGERASRLNDVKTLSS-------FRRSLDSSLRINDGEEEKTESVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSAGSAV 404          
BLAST of BolC9t59866H-R vs. GenBank_protein
Match: VDD20865.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 689 bits (1779), Expect = 3.370e-248
Identity = 384/410 (93.66%), Postives = 385/410 (93.90%), Query Frame = 0
Query:    3 SPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXXVGRKTSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEE-KTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 411
            S SSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXX XXXSPLQRHNVTSSFMPGIAVVIAVLT VFSLTFL+LLYVKHCKRRNGYVN TQRFATS    GGG     VGRK SGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVR  SS        RRSLDSSLRINDGEE KTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV
Sbjct:    2 SSSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXXXXXSPLQRHNVTSSFMPGIAVVIAVLTVVFSLTFLLLLYVKHCKRRNGYVNQTQRFATSH---GGGYGGVGVGRKNSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVRKFSS-------FRRSLDSSLRINDGEEEKTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 401          
BLAST of BolC9t59866H-R vs. GenBank_protein
Match: XP_013715689.1 (RING-H2 finger protein ATL43-like [Brassica napus])

HSP 1 Score: 689 bits (1778), Expect = 4.780e-248
Identity = 383/410 (93.41%), Postives = 385/410 (93.90%), Query Frame = 0
Query:    3 SPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXXVGRKTSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEE-KTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 411
            S SSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXX XXXSPLQRHNVTSSFMPGIAVVIAVLT VFSLTFL+LLYVKHCKRRNGYVN TQRFATS    GGG     VGRK SGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFH+ECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVR  SS        RRSLDSSLRINDGEE KTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV
Sbjct:    2 SSSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXXXXXSPLQRHNVTSSFMPGIAVVIAVLTVVFSLTFLLLLYVKHCKRRNGYVNQTQRFATSH---GGGYGGVGVGRKNSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHIECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVRKFSS-------FRRSLDSSLRINDGEEEKTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 401          
BLAST of BolC9t59866H-R vs. GenBank_protein
Match: CAF2359044.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 681 bits (1757), Expect = 8.130e-245
Identity = 380/409 (92.91%), Postives = 383/409 (93.64%), Query Frame = 0
Query:    3 SPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXXVGRKTSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEEKTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 411
            S SSSLLLVSLLSLFLN+SLADNDRYNTT          XX XXXSPLQRHNVTSSFMPGIAVVIAVLT VFSLTFL+LLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXX GRK SGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLN+VR  SS        RRSLDSSLRINDGEEKTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVI GRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV
Sbjct:    2 SSSSSLLLVSLLSLFLNSSLADNDRYNTTXXXXXXXXXXXXXXXXSPLQRHNVTSSFMPGIAVVIAVLTVVFSLTFLLLLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXXXGRKNSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNDVRKFSS-------FRRSLDSSLRINDGEEKTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVISGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 403          
BLAST of BolC9t59866H-R vs. GenBank_protein
Match: XP_033137777.1 (RING-H2 finger protein ATL43 [Brassica rapa])

HSP 1 Score: 679 bits (1751), Expect = 6.920e-244
Identity = 381/410 (92.93%), Postives = 384/410 (93.66%), Query Frame = 0
Query:    3 SPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXXVGRKTSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEE-KTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 411
            S SSSLLLVSLLSLFLN+SLADNDRYNTT          XX XXXSPLQRHNVTSSFMPGIAVVIAVLT VFSLTFL+LLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXX GRK SGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLN+VR  SS        RRSLDSSLRINDGEE KTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV
Sbjct:    2 SSSSSLLLVSLLSLFLNSSLADNDRYNTTXXXXXXXXXXXXXXXXSPLQRHNVTSSFMPGIAVVIAVLTVVFSLTFLLLLYVKHCKRRNGYVNDTQRFATSRYYGGGGXXXXXXGRKNSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXXTGSTRFDFVSRISGRHSSAGERASRLNDVRKLSS-------FRRSLDSSLRINDGEEEKTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 404          
BLAST of BolC9t59866H-R vs. GenBank_protein
Match: KAF8115166.1 (hypothetical protein N665_0029s0012 [Sinapis alba])

HSP 1 Score: 676 bits (1743), Expect = 1.480e-242
Identity = 378/417 (90.65%), Postives = 384/417 (92.09%), Query Frame = 0
Query:    2 SSPSSS-LLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPXXLXXXSPLQRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNG--YVNDTQRFATSRY---YGGGGXXXXXVGRKTSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNNXXXXXXXXXX-TGSTRFDFVSRISGRHSSAGERASRLNEVRTSSSSKSIPISIRRSLDSSLRINDGEEKTDSVAVAVGCFDRNQQRKDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILSDCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 411
            SSPSSS LLLVSLLSLFLN SLADNDRYNTTAVVIMNPTT   L   SPLQRH +TSSFMPGIAVVIAVLTAVFSLTFL+LLYVKHCKRRNG  YVN TQRFATSRY   YGGGG     VGRK SGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSN   XXXXXXXX TGST FDFVSRISGRHSSAGERASRLNEVRTSSSSKS PIS RRSLDSSLRINDG+EKT+SVAV  GCFDR+Q RKDGLLLN NRESFEARFEHRIIISGGNRDQRWSEVRP+DLLYLRSEMILSDCRKLAAAEDGREVI GRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV
Sbjct:    3 SSPSSSSLLLVSLLSLFLNTSLADNDRYNTTAVVIMNPTTSPPLPPPSPLQRHKITSSFMPGIAVVIAVLTAVFSLTFLLLLYVKHCKRRNGSGYVNHTQRFATSRYGGGYGGGG-----VGRKNSGIDRSVIESLPVFRFGALSGHKEGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLISDCNSWFELRLSNRQEXXXXXXXXXTGSTGFDFVSRISGRHSSAGERASRLNEVRTSSSSKSNPISFRRSLDSSLRINDGDEKTESVAV--GCFDRSQ-RKDGLLLNPNRESFEARFEHRIIISGGNRDQRWSEVRPSDLLYLRSEMILSDCRKLAAAEDGREVISGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLAWSHRPSASSAV 411          
The following BLAST results are available for this feature:
BLAST of BolC9t59866H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
XP_013611870.13.420e-271100.00PREDICTED: RING-H2 finger protein ATL43 [Brassica ... [more]
KAF3501112.11.620e-26999.51hypothetical protein F2Q69_00045494 [Brassica cret... [more]
XP_013728514.12.390e-26999.76RING-H2 finger protein ATL43-like [Brassica napus]... [more]
KAF2539817.19.300e-26799.03hypothetical protein F2Q68_00023268 [Brassica cret... [more]
RID42775.11.680e-25194.63hypothetical protein BRARA_J02636 [Brassica rapa][more]
VDD20865.13.370e-24893.66unnamed protein product [Brassica rapa][more]
XP_013715689.14.780e-24893.41RING-H2 finger protein ATL43-like [Brassica napus][more]
CAF2359044.18.130e-24592.91unnamed protein product [Brassica napus][more]
XP_033137777.16.920e-24492.93RING-H2 finger protein ATL43 [Brassica rapa][more]
KAF8115166.11.480e-24290.65hypothetical protein N665_0029s0012 [Sinapis alba][more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016567 protein ubiquitination
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016740 transferase activity
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 148..189
e-value: 3.3E-6
score: 36.6
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 147..190
e-value: 9.0E-13
score: 48.4
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 148..190
score: 12.504031
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 122..197
e-value: 2.1E-21
score: 76.9
NoneNo IPR availablePANTHERPTHR46539E3 UBIQUITIN-PROTEIN LIGASE ATL42coord: 32..407
NoneNo IPR availablePANTHERPTHR46539:SF2RING-H2 FINGER PROTEIN ATL43coord: 32..407
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..23
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 85..411
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..58
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 59..84
NoneNo IPR availableCDDcd16461RING-H2_EL5_likecoord: 147..190
e-value: 3.93599E-18
score: 75.4243
NoneNo IPR availableSIGNALP_GRAM_POSITIVESignalP-TMSignalP-TMcoord: 1..23
score: 0.671
NoneNo IPR availableSIGNALP_GRAM_NEGATIVESignalP-TMSignalP-TMcoord: 1..23
score: 0.659
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..23
score: 0.887
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 129..195
NoneNo IPR availableTMHMMTMhelixcoord: 62..84

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C9contigC9:61241225..61242460 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Blast2go on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC9t59866H-RBolC9t59866H-RBrassica oleracea HDEMmRNAC9 61241225..61242460 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolC9t59866H-R-P ID=BolC9t59866H-R-P|Name=BolC9t59866H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=412bp
MSSPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPPPLPPPSPL
QRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRF
ATSRYYGGGGYGGGGVGRKTSGIDRSVIESLPVFRFGALSGHKEGLECAV
CLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILL
ISDCNSWFELRLSNNRREESNNNNNTGSTRFDFVSRISGRHSSAGERASR
LNEVRTSSSSKSIPISIRRSLDSSLRINDGEEKTDSVAVAVGCFDRNQQR
KDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILS
DCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLA
WSHRPSASSAV.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
Vocabulary: Biological Process
TermDefinition
GO:0016567protein ubiquitination
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0016740transferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane