BolC9t59866H-R (mRNA) Brassica oleracea HDEM

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	BolC9t59866H-R
Unique Name	BolC9t59866H-R
Type	mRNA
Organism	Brassica oleracea HDEM (cv. HDEM, Wild cabbage)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C9	contig	C9:61241225..61242460 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Brassica oleracea HDEM OGS1.0	2018-11-02

Properties


Property Name	Value
Stop	1
Start	1
Cds size	1236

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
BolC9t59866H	BolC9t59866H	Brassica oleracea HDEM	gene	C9 61241225..61242460 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BolC9t59866H	BolC9t59866H	Brassica oleracea HDEM	CDS	C9 61241225..61242460 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BolC9t59866H_exon1	BolC9t59866H_exon1	Brassica oleracea HDEM	exon	C9 61241225..61242460 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
BolC9t59866H-R	BolC9t59866H-R-P	Brassica oleracea HDEM	polypeptide	C9 61241225..61242460 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at C9:61241225..61242460-
coding sequence from alignment at C9:61241225..61242460-

spliced messenger RNA

>BolC9t59866H-R ID=BolC9t59866H-R|Name=BolC9t59866H-R|organism=Brassica oleracea HDEM|type=mRNA|length=1236bp|location=Sequence derived from alignment at C9:61241225..61242460- (Brassica oleracea HDEM)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCTCCTTCTTCCTCGTTACTTCTTGTTTCTCTCCTCTCCCTCTT
CCTCAACGCCTCACTCGCAGACAATGATCGTTACAACACCACGGCGGTCG
TGATAATGAACCCAACAACACCACCGCCTCTCCCGCCGCCTTCTCCACTT
CAACGGCATAACGTCACTTCCTCTTTCATGCCCGGAATCGCCGTAGTCAT
CGCTGTCCTCACCGCCGTCTTCTCCCTCACGTTCTTGATCCTCCTCTACG
TCAAACACTGCAAACGACGCAACGGATACGTCAACGATACGCAGCGTTTC
GCAACGTCAAGATACTACGGAGGAGGAGGTTACGGTGGAGGCGGAGTAGG
GAGGAAAACCTCCGGTATAGACCGGTCTGTGATCGAATCTTTACCGGTTT
TCCGGTTTGGTGCACTGAGCGGTCACAAGGAAGGGCTAGAGTGCGCCGTG
TGCTTGGCCCGGTTCGAACCGACGGAAGTCTTGAGGCTATTGCCGAAATG
CAAACACGCTTTCCACGTAGAGTGCGTTGACACGTGGCTAGACGCGCACT
CCACTTGCCCGCTTTGCCGTTACCGGGTCGACCCGGAAGATATCCTCTTG
ATCAGTGATTGCAACTCGTGGTTCGAGCTCCGTTTATCTAATAACCGTCG
AGAAGAATCTAATAATAATAATAATACCGGTTCGACCCGGTTTGATTTCG
TGAGTCGTATCTCCGGTCGGCATTCATCGGCCGGAGAACGCGCGAGTCGA
CTCAACGAAGTTAGAACGTCTTCTTCGTCTAAATCGATTCCCATTTCGAT
TAGGAGGTCGCTCGATAGCTCTCTGAGGATCAACGACGGCGAGGAGAAAA
CGGACTCCGTCGCTGTCGCCGTCGGGTGTTTCGATCGGAATCAACAGAGG
AAAGACGGATTGTTGCTTAATTCGAACCGGGAAAGCTTCGAGGCGAGGTT
CGAGCACCGGATAATAATCTCCGGCGGGAATCGAGATCAGAGATGGAGCG
AGGTGAGGCCGGCTGATCTTCTCTACCTCCGATCGGAGATGATTCTGAGT
GATTGCCGGAAGCTAGCTGCGGCGGAGGATGGCAGAGAGGTGATTGGTGG
GAGAAGCGTGTCGGAGTTAACGAGCATTGATAGACGGAGGAGATGGGGAG
GAGAGCCGAGACAACGACAAGCCACGGCGGTGATCTCGAGATGGCTCGCT
TGGTCCCACCGTCCCTCCGCTTCCAGCGCTGTTTAA

protein sequence of BolC9t59866H-R

>BolC9t59866H-R-P ID=BolC9t59866H-R-P|Name=BolC9t59866H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=412bp
MSSPSSSLLLVSLLSLFLNASLADNDRYNTTAVVIMNPTTPPPLPPPSPL
QRHNVTSSFMPGIAVVIAVLTAVFSLTFLILLYVKHCKRRNGYVNDTQRF
ATSRYYGGGGYGGGGVGRKTSGIDRSVIESLPVFRFGALSGHKEGLECAV
CLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILL
ISDCNSWFELRLSNNRREESNNNNNTGSTRFDFVSRISGRHSSAGERASR
LNEVRTSSSSKSIPISIRRSLDSSLRINDGEEKTDSVAVAVGCFDRNQQR
KDGLLLNSNRESFEARFEHRIIISGGNRDQRWSEVRPADLLYLRSEMILS
DCRKLAAAEDGREVIGGRSVSELTSIDRRRRWGGEPRQRQATAVISRWLA
WSHRPSASSAV.

mRNA from alignment at C9:61241225..61242460-

Legend: CDSpolypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>BolC9t59866H-R ID=BolC9t59866H-R|Name=BolC9t59866H-R|organism=Brassica oleracea HDEM|type=mRNA|length=1236bp|location=Sequence derived from alignment at C9:61241225..61242460- (Brassica oleracea HDEM)
ATGTCTTCTCCTTCTTCCTCGTTACTTCTTGTTTCTCTCCTCTCCCTCTT
CCTCAACGCCTCACTCGCAGACAATGATCGTTACAACACCACGGCGGTCG
TGATAATGAACCCAACAACACCACCGCCTCTCCCGCCGCCTTCTCCACTT
CAACGGCATAACGTCACTTCCTCTTTCATGCCCGGAATCGCCGTAGTCAT
CGCTGTCCTCACCGCCGTCTTCTCCCTCACGTTCTTGATCCTCCTCTACG
TCAAACACTGCAAACGACGCAACGGATACGTCAACGATACGCAGCGTTTC
GCAACGTCAAGATACTACGGAGGAGGAGGTTACGGTGGAGGCGGAGTAGG
GAGGAAAACCTCCGGTATAGACCGGTCTGTGATCGAATCTTTACCGGTTT
TCCGGTTTGGTGCACTGAGCGGTCACAAGGAAGGGCTAGAGTGCGCCGTG
TGCTTGGCCCGGTTCGAACCGACGGAAGTCTTGAGGCTATTGCCGAAATG
CAAACACGCTTTCCACGTAGAGTGCGTTGACACGTGGCTAGACGCGCACT
CCACTTGCCCGCTTTGCCGTTACCGGGTCGACCCGGAAGATATCCTCTTG
ATCAGTGATTGCAACTCGTGGTTCGAGCTCCGTTTATCTAATAACCGTCG
AGAAGAATCTAATAATAATAATAATACCGGTTCGACCCGGTTTGATTTCG
TGAGTCGTATCTCCGGTCGGCATTCATCGGCCGGAGAACGCGCGAGTCGA
CTCAACGAAGTTAGAACGTCTTCTTCGTCTAAATCGATTCCCATTTCGAT
TAGGAGGTCGCTCGATAGCTCTCTGAGGATCAACGACGGCGAGGAGAAAA
CGGACTCCGTCGCTGTCGCCGTCGGGTGTTTCGATCGGAATCAACAGAGG
AAAGACGGATTGTTGCTTAATTCGAACCGGGAAAGCTTCGAGGCGAGGTT
CGAGCACCGGATAATAATCTCCGGCGGGAATCGAGATCAGAGATGGAGCG
AGGTGAGGCCGGCTGATCTTCTCTACCTCCGATCGGAGATGATTCTGAGT
GATTGCCGGAAGCTAGCTGCGGCGGAGGATGGCAGAGAGGTGATTGGTGG
GAGAAGCGTGTCGGAGTTAACGAGCATTGATAGACGGAGGAGATGGGGAG
GAGAGCCGAGACAACGACAAGCCACGGCGGTGATCTCGAGATGGCTCGCT
TGGTCCCACCGTCCCTCCGCTTCCAGCGCTGTTTAA

Coding sequence (CDS) from alignment at C9:61241225..61242460-

>BolC9t59866H-R ID=BolC9t59866H-R|Name=BolC9t59866H-R|organism=Brassica oleracea HDEM|type=CDS|length=1236bp|location=Sequence derived from alignment at C9:61241225..61242460- (Brassica oleracea HDEM)
ATGTCTTCTCCTTCTTCCTCGTTACTTCTTGTTTCTCTCCTCTCCCTCTT
CCTCAACGCCTCACTCGCAGACAATGATCGTTACAACACCACGGCGGTCG
TGATAATGAACCCAACAACACCACCGCCTCTCCCGCCGCCTTCTCCACTT
CAACGGCATAACGTCACTTCCTCTTTCATGCCCGGAATCGCCGTAGTCAT
CGCTGTCCTCACCGCCGTCTTCTCCCTCACGTTCTTGATCCTCCTCTACG
TCAAACACTGCAAACGACGCAACGGATACGTCAACGATACGCAGCGTTTC
GCAACGTCAAGATACTACGGAGGAGGAGGTTACGGTGGAGGCGGAGTAGG
GAGGAAAACCTCCGGTATAGACCGGTCTGTGATCGAATCTTTACCGGTTT
TCCGGTTTGGTGCACTGAGCGGTCACAAGGAAGGGCTAGAGTGCGCCGTG
TGCTTGGCCCGGTTCGAACCGACGGAAGTCTTGAGGCTATTGCCGAAATG
CAAACACGCTTTCCACGTAGAGTGCGTTGACACGTGGCTAGACGCGCACT
CCACTTGCCCGCTTTGCCGTTACCGGGTCGACCCGGAAGATATCCTCTTG
ATCAGTGATTGCAACTCGTGGTTCGAGCTCCGTTTATCTAATAACCGTCG
AGAAGAATCTAATAATAATAATAATACCGGTTCGACCCGGTTTGATTTCG
TGAGTCGTATCTCCGGTCGGCATTCATCGGCCGGAGAACGCGCGAGTCGA
CTCAACGAAGTTAGAACGTCTTCTTCGTCTAAATCGATTCCCATTTCGAT
TAGGAGGTCGCTCGATAGCTCTCTGAGGATCAACGACGGCGAGGAGAAAA
CGGACTCCGTCGCTGTCGCCGTCGGGTGTTTCGATCGGAATCAACAGAGG
AAAGACGGATTGTTGCTTAATTCGAACCGGGAAAGCTTCGAGGCGAGGTT
CGAGCACCGGATAATAATCTCCGGCGGGAATCGAGATCAGAGATGGAGCG
AGGTGAGGCCGGCTGATCTTCTCTACCTCCGATCGGAGATGATTCTGAGT
GATTGCCGGAAGCTAGCTGCGGCGGAGGATGGCAGAGAGGTGATTGGTGG
GAGAAGCGTGTCGGAGTTAACGAGCATTGATAGACGGAGGAGATGGGGAG
GAGAGCCGAGACAACGACAAGCCACGGCGGTGATCTCGAGATGGCTCGCT
TGGTCCCACCGTCCCTCCGCTTCCAGCGCTGTTTAA

Orthology

View orthology data for BolC9t59866H-R