BolC9t59807H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	BolC9t59807H-R
Unique Name	BolC9t59807H-R-P
Type	polypeptide
Organism	Brassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length	102

Homology

[Close]

BLAST of BolC9t59807H-R vs. GenBank_protein
Match: VDD34484.1 (unnamed protein product [Brassica oleracea] >VDD34489.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 201 bits (511), Expect = 5.120e-65
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0

Query:    1 METPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMKTCEGESSKSGGADDA 101
            METPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMKTCEGESSKSGGADDA
Sbjct:    1 METPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMKTCEGESSKSGGADDA 101

[Close]

BLAST of BolC9t59807H-R vs. GenBank_protein
Match: XP_013608516.1 (PREDICTED: uncharacterized protein LOC106315327 [Brassica oleracea var. oleracea] >XP_013615132.1 PREDICTED: uncharacterized protein LOC106321401 [Brassica oleracea var. oleracea])

HSP 1 Score: 200 bits (508), Expect = 1.470e-64
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 0

Query:    1 METPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMKTCEGESSKSGGADDA 101
            METPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMKTCEGE+SKSGGADDA
Sbjct:    1 METPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMKTCEGENSKSGGADDA 101

[Close]

BLAST of BolC9t59807H-R vs. GenBank_protein
Match: VDD34480.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 198 bits (504), Expect = 5.990e-64
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0

Query:    1 METPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMKTCEGESSKSGGADDA 101
            METPKLKLAVEELEMDHLMLQIQNGRML DLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMKTCEGESSKSGGADDA
Sbjct:    1 METPKLKLAVEELEMDHLMLQIQNGRMLGDLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMKTCEGESSKSGGADDA 101

[Close]

BLAST of BolC9t59807H-R vs. GenBank_protein
Match: XP_013615874.1 (PREDICTED: uncharacterized protein LOC106322388 [Brassica oleracea var. oleracea])

HSP 1 Score: 176 bits (446), Expect = 2.740e-55
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0

Query:   15 MDHLMLQIQNGRMLDDLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMKTCEGESSKSGGADDA 101
            MDHLMLQIQNGRMLDDLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMKTCEGESSKSGGADDA
Sbjct:    1 MDHLMLQIQNGRMLDDLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMKTCEGESSKSGGADDA 87

[Close]

BLAST of BolC9t59807H-R vs. GenBank_protein
Match: XP_009122906.2 (uncharacterized protein LOC103847565 [Brassica rapa] >XP_013715332.1 uncharacterized protein LOC106419121 [Brassica napus])

HSP 1 Score: 176 bits (445), Expect = 6.000e-55
Identity = 94/102 (92.16%), Postives = 96/102 (94.12%), Query Frame = 0

Query:    1 METPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMK-TCEGESSKSGGADDA 101
            M TPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYA KKF+TL GEIP AP FP+IQGGSVYLMDKWIKDPSDKEDEMK TCEGESSKSGGADDA
Sbjct:    1 MGTPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYASKKFQTLVGEIPKAP-FPLIQGGSVYLMDKWIKDPSDKEDEMKKTCEGESSKSGGADDA 101

[Close]

BLAST of BolC9t59807H-R vs. GenBank_protein
Match: CAF2322108.1 (unnamed protein product [Brassica napus] >CAF2322118.1 unnamed protein product [Brassica napus])

HSP 1 Score: 170 bits (431), Expect = 8.190e-53
Identity = 92/102 (90.20%), Postives = 95/102 (93.14%), Query Frame = 0

Query:    1 METPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMK-TCEGESSKSGGADDA 101
            M TPKLKLAVEELEMDHL+LQIQNGRMLDDLSQTETEKLKSYA KKF+TL GEIP AP FPMIQGGSVYLMDKWI+DPSDKEDEMK TCEGESSKS GADDA
Sbjct:    1 MGTPKLKLAVEELEMDHLILQIQNGRMLDDLSQTETEKLKSYASKKFQTLLGEIPKAP-FPMIQGGSVYLMDKWIEDPSDKEDEMKKTCEGESSKSVGADDA 101

[Close]

BLAST of BolC9t59807H-R vs. GenBank_protein
Match: VDD17290.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 171 bits (432), Expect = 1.070e-51
Identity = 91/98 (92.86%), Postives = 92/98 (93.88%), Query Frame = 0

Query:    1 METPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMK-TCEGESSKSGG 97
            M TPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYA KKF+TL GEIP AP FPMIQGGSVYLMDKWIKDPSDKEDEMK TCEGESSKSGG
Sbjct:    1 MGTPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYASKKFQTLMGEIPKAP-FPMIQGGSVYLMDKWIKDPSDKEDEMKKTCEGESSKSGG 97

[Close]

BLAST of BolC9t59807H-R vs. GenBank_protein
Match: CAF1789729.1 (unnamed protein product [Brassica napus] >CDY64728.1 BnaA10g30600D [Brassica napus] >VDD20783.1 unnamed protein product [Brassica rapa])

HSP 1 Score: 169 bits (429), Expect = 3.060e-51
Identity = 90/98 (91.84%), Postives = 92/98 (93.88%), Query Frame = 0

Query:    1 METPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMK-TCEGESSKSGG 97
            M TPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYA KKF+TL GEIP AP FP+IQGGSVYLMDKWIKDPSDKEDEMK TCEGESSKSGG
Sbjct:    1 MGTPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYASKKFQTLVGEIPKAP-FPLIQGGSVYLMDKWIKDPSDKEDEMKKTCEGESSKSGG 97

[Close]

BLAST of BolC9t59807H-R vs. GenBank_protein
Match: CAF2358403.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 169 bits (429), Expect = 3.060e-51
Identity = 90/98 (91.84%), Postives = 92/98 (93.88%), Query Frame = 0

Query:    1 METPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMK-TCEGESSKSGG 97
            M TPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYA KKF+TL GEIP AP FP+IQGGSVYLMDKWIKDPSDKEDEMK TCEGESSKSGG
Sbjct:    1 MGTPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYASKKFQTLVGEIPKAP-FPLIQGGSVYLMDKWIKDPSDKEDEMKNTCEGESSKSGG 97

[Close]

BLAST of BolC9t59807H-R vs. GenBank_protein
Match: CAF2321987.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 169 bits (428), Expect = 4.340e-51
Identity = 90/98 (91.84%), Postives = 92/98 (93.88%), Query Frame = 0

Query:    1 METPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMK-TCEGESSKSGG 97
            M TPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYA KKF+TL GEIP AP FPMIQGGSVYLMDKWI+DPSDKEDEMK TCEGESSKSGG
Sbjct:    1 MGTPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYASKKFQTLLGEIPKAP-FPMIQGGSVYLMDKWIEDPSDKEDEMKKTCEGESSKSGG 97

The following BLAST results are available for this feature:

BLAST of BolC9t59807H-R vs. GenBank_protein

BLAST of BolC9t59807H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20


Match Name	E-value	Identity	Description
VDD34484.1	5.120e-65	100.00	unnamed protein product [Brassica oleracea] >VDD34...	[more]
XP_013608516.1	1.470e-64	99.01	PREDICTED: uncharacterized protein LOC106315327 [B...	[more]
VDD34480.1	5.990e-64	99.01	unnamed protein product [Brassica oleracea]	[more]
XP_013615874.1	2.740e-55	100.00	PREDICTED: uncharacterized protein LOC106322388 [B...	[more]
XP_009122906.2	6.000e-55	92.16	uncharacterized protein LOC103847565 [Brassica rap...	[more]
CAF2322108.1	8.190e-53	90.20	unnamed protein product [Brassica napus] >CAF23221...	[more]
VDD17290.1	1.070e-51	92.86	unnamed protein product [Brassica rapa]	[more]
CAF1789729.1	3.060e-51	91.84	unnamed protein product [Brassica napus] >CDY64728...	[more]
CAF2358403.1	3.060e-51	91.84	unnamed protein product [Brassica napus]	[more]
CAF2321987.1	4.340e-51	91.84	unnamed protein product [Brassica napus]	[more]

Pages

InterPro

Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..101

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C9	contig	C9:60963672..60963977 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
Interproscan on OGS1.0	2022-03-19
Diamond on OGS1.0 vs NR	2022-03-19
Brassica oleracea HDEM OGS1.0	2018-11-02

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
BolC9t59807H-R	BolC9t59807H-R	Brassica oleracea HDEM	mRNA	C9 60963672..60963977 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>BolC9t59807H-R-P ID=BolC9t59807H-R-P|Name=BolC9t59807H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=102bp
METPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYAIKKFRTL
CGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMKTCEGESSKSGGADD
A.

Orthology

View orthology data for BolC9t59807H-R-P