BolC9t59807H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolC9t59807H-R
Unique NameBolC9t59807H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length102
Homology
BLAST of BolC9t59807H-R vs. GenBank_protein
Match: VDD34484.1 (unnamed protein product [Brassica oleracea] >VDD34489.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 201 bits (511), Expect = 5.120e-65
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0
Query:    1 METPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMKTCEGESSKSGGADDA 101
            METPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMKTCEGESSKSGGADDA
Sbjct:    1 METPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMKTCEGESSKSGGADDA 101          
BLAST of BolC9t59807H-R vs. GenBank_protein
Match: XP_013608516.1 (PREDICTED: uncharacterized protein LOC106315327 [Brassica oleracea var. oleracea] >XP_013615132.1 PREDICTED: uncharacterized protein LOC106321401 [Brassica oleracea var. oleracea])

HSP 1 Score: 200 bits (508), Expect = 1.470e-64
Identity = 100/101 (99.01%), Postives = 101/101 (100.00%), Query Frame = 0
Query:    1 METPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMKTCEGESSKSGGADDA 101
            METPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMKTCEGE+SKSGGADDA
Sbjct:    1 METPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMKTCEGENSKSGGADDA 101          
BLAST of BolC9t59807H-R vs. GenBank_protein
Match: VDD34480.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 198 bits (504), Expect = 5.990e-64
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0
Query:    1 METPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMKTCEGESSKSGGADDA 101
            METPKLKLAVEELEMDHLMLQIQNGRML DLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMKTCEGESSKSGGADDA
Sbjct:    1 METPKLKLAVEELEMDHLMLQIQNGRMLGDLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMKTCEGESSKSGGADDA 101          
BLAST of BolC9t59807H-R vs. GenBank_protein
Match: XP_013615874.1 (PREDICTED: uncharacterized protein LOC106322388 [Brassica oleracea var. oleracea])

HSP 1 Score: 176 bits (446), Expect = 2.740e-55
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0
Query:   15 MDHLMLQIQNGRMLDDLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMKTCEGESSKSGGADDA 101
            MDHLMLQIQNGRMLDDLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMKTCEGESSKSGGADDA
Sbjct:    1 MDHLMLQIQNGRMLDDLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMKTCEGESSKSGGADDA 87          
BLAST of BolC9t59807H-R vs. GenBank_protein
Match: XP_009122906.2 (uncharacterized protein LOC103847565 [Brassica rapa] >XP_013715332.1 uncharacterized protein LOC106419121 [Brassica napus])

HSP 1 Score: 176 bits (445), Expect = 6.000e-55
Identity = 94/102 (92.16%), Postives = 96/102 (94.12%), Query Frame = 0
Query:    1 METPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMK-TCEGESSKSGGADDA 101
            M TPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYA KKF+TL GEIP AP FP+IQGGSVYLMDKWIKDPSDKEDEMK TCEGESSKSGGADDA
Sbjct:    1 MGTPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYASKKFQTLVGEIPKAP-FPLIQGGSVYLMDKWIKDPSDKEDEMKKTCEGESSKSGGADDA 101          
BLAST of BolC9t59807H-R vs. GenBank_protein
Match: CAF2322108.1 (unnamed protein product [Brassica napus] >CAF2322118.1 unnamed protein product [Brassica napus])

HSP 1 Score: 170 bits (431), Expect = 8.190e-53
Identity = 92/102 (90.20%), Postives = 95/102 (93.14%), Query Frame = 0
Query:    1 METPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMK-TCEGESSKSGGADDA 101
            M TPKLKLAVEELEMDHL+LQIQNGRMLDDLSQTETEKLKSYA KKF+TL GEIP AP FPMIQGGSVYLMDKWI+DPSDKEDEMK TCEGESSKS GADDA
Sbjct:    1 MGTPKLKLAVEELEMDHLILQIQNGRMLDDLSQTETEKLKSYASKKFQTLLGEIPKAP-FPMIQGGSVYLMDKWIEDPSDKEDEMKKTCEGESSKSVGADDA 101          
BLAST of BolC9t59807H-R vs. GenBank_protein
Match: VDD17290.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 171 bits (432), Expect = 1.070e-51
Identity = 91/98 (92.86%), Postives = 92/98 (93.88%), Query Frame = 0
Query:    1 METPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMK-TCEGESSKSGG 97
            M TPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYA KKF+TL GEIP AP FPMIQGGSVYLMDKWIKDPSDKEDEMK TCEGESSKSGG
Sbjct:    1 MGTPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYASKKFQTLMGEIPKAP-FPMIQGGSVYLMDKWIKDPSDKEDEMKKTCEGESSKSGG 97          
BLAST of BolC9t59807H-R vs. GenBank_protein
Match: CAF1789729.1 (unnamed protein product [Brassica napus] >CDY64728.1 BnaA10g30600D [Brassica napus] >VDD20783.1 unnamed protein product [Brassica rapa])

HSP 1 Score: 169 bits (429), Expect = 3.060e-51
Identity = 90/98 (91.84%), Postives = 92/98 (93.88%), Query Frame = 0
Query:    1 METPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMK-TCEGESSKSGG 97
            M TPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYA KKF+TL GEIP AP FP+IQGGSVYLMDKWIKDPSDKEDEMK TCEGESSKSGG
Sbjct:    1 MGTPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYASKKFQTLVGEIPKAP-FPLIQGGSVYLMDKWIKDPSDKEDEMKKTCEGESSKSGG 97          
BLAST of BolC9t59807H-R vs. GenBank_protein
Match: CAF2358403.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 169 bits (429), Expect = 3.060e-51
Identity = 90/98 (91.84%), Postives = 92/98 (93.88%), Query Frame = 0
Query:    1 METPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMK-TCEGESSKSGG 97
            M TPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYA KKF+TL GEIP AP FP+IQGGSVYLMDKWIKDPSDKEDEMK TCEGESSKSGG
Sbjct:    1 MGTPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYASKKFQTLVGEIPKAP-FPLIQGGSVYLMDKWIKDPSDKEDEMKNTCEGESSKSGG 97          
BLAST of BolC9t59807H-R vs. GenBank_protein
Match: CAF2321987.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 169 bits (428), Expect = 4.340e-51
Identity = 90/98 (91.84%), Postives = 92/98 (93.88%), Query Frame = 0
Query:    1 METPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYAIKKFRTLCGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMK-TCEGESSKSGG 97
            M TPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYA KKF+TL GEIP AP FPMIQGGSVYLMDKWI+DPSDKEDEMK TCEGESSKSGG
Sbjct:    1 MGTPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYASKKFQTLLGEIPKAP-FPMIQGGSVYLMDKWIEDPSDKEDEMKKTCEGESSKSGG 97          
The following BLAST results are available for this feature:
BLAST of BolC9t59807H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
VDD34484.15.120e-65100.00unnamed protein product [Brassica oleracea] >VDD34... [more]
XP_013608516.11.470e-6499.01PREDICTED: uncharacterized protein LOC106315327 [B... [more]
VDD34480.15.990e-6499.01unnamed protein product [Brassica oleracea][more]
XP_013615874.12.740e-55100.00PREDICTED: uncharacterized protein LOC106322388 [B... [more]
XP_009122906.26.000e-5592.16uncharacterized protein LOC103847565 [Brassica rap... [more]
CAF2322108.18.190e-5390.20unnamed protein product [Brassica napus] >CAF23221... [more]
VDD17290.11.070e-5192.86unnamed protein product [Brassica rapa][more]
CAF1789729.13.060e-5191.84unnamed protein product [Brassica napus] >CDY64728... [more]
CAF2358403.13.060e-5191.84unnamed protein product [Brassica napus][more]
CAF2321987.14.340e-5191.84unnamed protein product [Brassica napus][more]

Pages

back to top
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..101

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C9contigC9:60963672..60963977 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC9t59807H-RBolC9t59807H-RBrassica oleracea HDEMmRNAC9 60963672..60963977 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolC9t59807H-R-P ID=BolC9t59807H-R-P|Name=BolC9t59807H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=102bp
METPKLKLAVEELEMDHLMLQIQNGRMLDDLSQTETEKLKSYAIKKFRTL
CGEIPMAPGFPMIQGGSVYLMDKWIKDPSDKEDEMKTCEGESSKSGGADD
A.
back to top