BolC9t59801H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	BolC9t59801H-R
Unique Name	BolC9t59801H-R-P
Type	polypeptide
Organism	Brassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length	109

Homology

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BLAST of BolC9t59801H-R vs. GenBank_protein
Match: KAF2536225.1 (hypothetical protein F2Q68_00023216 [Brassica cretica] >VDD34478.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 202 bits (514), Expect = 2.980e-65
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0

Query:    1 MERKLEDLVSYLKTEIEKKEKELDHIRKVNKELESQIMFQIENGRSLDHLSQTEPILGDDIPKASDVAPEGGHSFRPTGKRNMEPDDDDDEMKTYEGESSKSGGADDA 108
            MERKLEDLVSYLKTEIEKKEKELDHIRKVNKELESQIMFQIENGRSLDHLSQTEPILGDDIPKASDVAPEGGHSFRPTGKRNMEPDDDDDEMKTYEGESSKSGGADDA
Sbjct:    1 MERKLEDLVSYLKTEIEKKEKELDHIRKVNKELESQIMFQIENGRSLDHLSQTEPILGDDIPKASDVAPEGGHSFRPTGKRNMEPDDDDDEMKTYEGESSKSGGADDA 108

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BLAST of BolC9t59801H-R vs. GenBank_protein
Match: KAF3567993.1 (hypothetical protein DY000_02019653 [Brassica cretica])

HSP 1 Score: 199 bits (507), Expect = 3.480e-64
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0

Query:    1 MERKLEDLVSYLKTEIEKKEKELDHIRKVNKELESQIMFQIENGRSLDHLSQTEPILGDDIPKASDVAPEGGHSFRPTGKRNMEPDDDDDEMKTYEGESSKSGGADDA 108
            MERKLEDLVSY KTEIEKKEKELDHIRKVNKELESQIMFQIENGRSLDHLSQTEPILGDDIPKASDVAPEGGHSFRPTGKRNMEPDDDDDEMKTYEGESSKSGGADDA
Sbjct:    1 MERKLEDLVSYPKTEIEKKEKELDHIRKVNKELESQIMFQIENGRSLDHLSQTEPILGDDIPKASDVAPEGGHSFRPTGKRNMEPDDDDDEMKTYEGESSKSGGADDA 108

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BLAST of BolC9t59801H-R vs. GenBank_protein
Match: CAF1789706.1 (unnamed protein product [Brassica napus] >CAF2358348.1 unnamed protein product [Brassica napus] >CDY64731.1 BnaA10g30630D [Brassica napus])

HSP 1 Score: 178 bits (452), Expect = 7.750e-56
Identity = 99/108 (91.67%), Postives = 101/108 (93.52%), Query Frame = 0

Query:    1 MERKLEDLVSYLKTEIEKKEKELDHIRKVNKELESQIMFQIENGRSLDHLSQTEPILGDDIPKASDVAPEGGHSFRPTGKRNMEPDDDDDEMKTYEGESSKSGGADDA 108
            MERKLEDLVSYLKT+IEK+EKELDHIRK   ELESQIMFQIENGRSLDHLSQTEP LGDDIPKA DVAPEGG SFRPTGK NMEPDDDDDEMKTYEGESSKSGGADDA
Sbjct:    1 MERKLEDLVSYLKTKIEKREKELDHIRK---ELESQIMFQIENGRSLDHLSQTEPTLGDDIPKACDVAPEGGPSFRPTGKGNMEPDDDDDEMKTYEGESSKSGGADDA 105

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BLAST of BolC9t59801H-R vs. GenBank_protein
Match: KAG5377281.1 (hypothetical protein IGI04_041877 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 171 bits (433), Expect = 4.200e-47
Identity = 96/112 (85.71%), Postives = 98/112 (87.50%), Query Frame = 0

Query:    1 MERKLEDLVSYLKTEIEKKEKELDHIRKVN----------KELESQIMFQIENGRSLDHLSQTEPILGDDIPKASDVAPEGGHSFRPTGKRNMEPDDDDDEMKTYEGESSKS 102
            MERKLEDLVSYLKT+IEK+EKELDHIRKVN          KELESQIMFQIENGRSLDHLSQTEP LGDDIPKA DVAPEGG SFRPTGK NMEPDDDDDEMKTYEGESSKS
Sbjct:    1 MERKLEDLVSYLKTKIEKREKELDHIRKVNNSSIISEIHLKELESQIMFQIENGRSLDHLSQTEPTLGDDIPKACDVAPEGGPSFRPTGKGNMEPDDDDDEMKTYEGESSKS 112

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BLAST of BolC9t59801H-R vs. GenBank_protein
Match: KAG2262735.1 (hypothetical protein Bca52824_069814 [Brassica carinata])

HSP 1 Score: 155 bits (393), Expect = 5.470e-47
Identity = 89/108 (82.41%), Postives = 89/108 (82.41%), Query Frame = 0

Query:    1 MERKLEDLVSYLKTEIEKKEKELDHIRKVNKELESQIMFQIENGRSLDHLSQTEPILGDDIPKASDVAPEGGHSFRPTGKRNMEPDDDDDEMKTYEGESSKSGGADDA 108
            MERKLEDLVSYLKTEIEKKEKELDHIRKVN                   LSQTEPILGDDIPKASDVAPEGGHSFRPTGKRNMEPDDDDDEMKTYEGESSKSGGADDA
Sbjct:    1 MERKLEDLVSYLKTEIEKKEKELDHIRKVN--------------XXXXXLSQTEPILGDDIPKASDVAPEGGHSFRPTGKRNMEPDDDDDEMKTYEGESSKSGGADDA 94

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BLAST of BolC9t59801H-R vs. GenBank_protein
Match: KAF3503862.1 (hypothetical protein F2Q69_00045441 [Brassica cretica])

HSP 1 Score: 143 bits (360), Expect = 4.900e-42
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0

Query:    1 MERKLEDLVSYLKTEIEKKEKELDHIRKVNKELESQIMFQIENGRSLDHLSQTEPILGDDIPKASDVAPEGGHSFRP 77
            MERKLEDLVSYLKTEIEKKEKELDHIRKVNKELESQIMFQIENGRSLDHLSQTEPILGDDIPKASDVAPEGGH+F P
Sbjct:    1 MERKLEDLVSYLKTEIEKKEKELDHIRKVNKELESQIMFQIENGRSLDHLSQTEPILGDDIPKASDVAPEGGHTFFP 77

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BLAST of BolC9t59801H-R vs. GenBank_protein
Match: VDD20777.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 127 bits (318), Expect = 8.460e-36
Identity = 69/78 (88.46%), Postives = 72/78 (92.31%), Query Frame = 0

Query:    1 MERKLEDLVSYLKTEIEKKEKELDHIRKVNKELESQIMFQIENGRSLDHLSQTEPILGDDIPKASDVAPEGGHSFRPT 78
            ME+KLEDLVSYLKT+IEK+EKELDHIRK   ELESQIMFQIENGRSLDHLSQTEP LGDDIPKA DVAPEGG SFRPT
Sbjct:    1 MEKKLEDLVSYLKTKIEKREKELDHIRK---ELESQIMFQIENGRSLDHLSQTEPTLGDDIPKACDVAPEGGPSFRPT 75

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BLAST of BolC9t59801H-R vs. GenBank_protein
Match: XP_013610811.1 (PREDICTED: uncharacterized protein LOC106317559 [Brassica oleracea var. oleracea])

HSP 1 Score: 110 bits (276), Expect = 5.300e-29
Identity = 66/105 (62.86%), Postives = 76/105 (72.38%), Query Frame = 0

Query:    4 KLEDLVSYLKTEIEKKEKELDHIRKVNKELESQIMFQIENGRSLDHLSQTEPILGDDIPKASDVAPEGGHSFRPTGKRNMEPDDDDDEMKTYEGESSKSGGADDA 108
            K+ DL + +K  I++ E+E +   K+ KELE+QIM   E G      S  EPILGDD+PKASDVAPEGG SFRPTGK NMEP DDDDE KT EGESSKSGG DDA
Sbjct:    3 KVGDLETCIKNRIKEIEEEEERNLKILKELETQIMSPTEKGTQHPSTSINEPILGDDVPKASDVAPEGGPSFRPTGKGNMEPSDDDDEKKTNEGESSKSGGVDDA 107

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BLAST of BolC9t59801H-R vs. GenBank_protein
Match: KAF3504637.1 (hypothetical protein F2Q69_00045413 [Brassica cretica])

HSP 1 Score: 110 bits (276), Expect = 5.300e-29
Identity = 66/105 (62.86%), Postives = 76/105 (72.38%), Query Frame = 0

Query:    4 KLEDLVSYLKTEIEKKEKELDHIRKVNKELESQIMFQIENGRSLDHLSQTEPILGDDIPKASDVAPEGGHSFRPTGKRNMEPDDDDDEMKTYEGESSKSGGADDA 108
            K+ DL + +K  I++ E+E +   K+ KELE+QIM   E G      S  EPILGDD+PKASDVAPEGG SFRPTGK NMEP DDDDE KT EGESSKSGG DDA
Sbjct:    3 KVGDLETCIKNRIKEIEEEEERNLKILKELETQIMSPTEKGTQHPSTSINEPILGDDVPKASDVAPEGGPSFRPTGKGNMEPSDDDDEKKTNEGESSKSGGVDDA 107

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BLAST of BolC9t59801H-R vs. GenBank_protein
Match: XP_013715507.1 (uncharacterized protein LOC106419293 [Brassica napus] >XP_013715508.1 uncharacterized protein LOC106419294 [Brassica napus] >XP_013715510.1 uncharacterized protein LOC106419295 [Brassica napus] >XP_013715511.1 uncharacterized protein LOC106419296 [Brassica napus])

HSP 1 Score: 102 bits (253), Expect = 1.660e-25
Identity = 61/105 (58.10%), Postives = 74/105 (70.48%), Query Frame = 0

Query:    4 KLEDLVSYLKTEIEKKEKELDHIRKVNKELESQIMFQIENGRSLDHLSQTEPILGDDIPKASDVAPEGGHSFRPTGKRNMEPDDDDDEMKTYEGESSKSGGADDA 108
            K+ DL + +   I++ E+E +   K+ KELE+QIM   E G      S  +PILGDD+PKASDVAPEGG SFRP GK NM+P DDDDE KT EG+SSKSGG DDA
Sbjct:    3 KVGDLETCINNRIKEIEEEEERNLKILKELETQIMSPTEKGTQHPSTSINKPILGDDVPKASDVAPEGGPSFRPKGKGNMKPSDDDDEKKTNEGKSSKSGGVDDA 107

The following BLAST results are available for this feature:

BLAST of BolC9t59801H-R vs. GenBank_protein

BLAST of BolC9t59801H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20


Match Name	E-value	Identity	Description
KAF2536225.1	2.980e-65	100.00	hypothetical protein F2Q68_00023216 [Brassica cret...	[more]
KAF3567993.1	3.480e-64	99.07	hypothetical protein DY000_02019653 [Brassica cret...	[more]
CAF1789706.1	7.750e-56	91.67	unnamed protein product [Brassica napus] >CAF23583...	[more]
KAG5377281.1	4.200e-47	85.71	hypothetical protein IGI04_041877 [Brassica rapa s...	[more]
KAG2262735.1	5.470e-47	82.41	hypothetical protein Bca52824_069814 [Brassica car...	[more]
KAF3503862.1	4.900e-42	97.40	hypothetical protein F2Q69_00045441 [Brassica cret...	[more]
VDD20777.1	8.460e-36	88.46	unnamed protein product [Brassica rapa]	[more]
XP_013610811.1	5.300e-29	62.86	PREDICTED: uncharacterized protein LOC106317559 [B...	[more]
KAF3504637.1	5.300e-29	62.86	hypothetical protein F2Q69_00045413 [Brassica cret...	[more]
XP_013715507.1	1.660e-25	58.10	uncharacterized protein LOC106419293 [Brassica nap...	[more]

Pages

InterPro

Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 2..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..108

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C9	contig	C9:60946254..60946580 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
Interproscan on OGS1.0	2022-03-19
Diamond on OGS1.0 vs NR	2022-03-19
Brassica oleracea HDEM OGS1.0	2018-11-02

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
BolC9t59801H-R	BolC9t59801H-R	Brassica oleracea HDEM	mRNA	C9 60946254..60946580 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>BolC9t59801H-R-P ID=BolC9t59801H-R-P|Name=BolC9t59801H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=109bp
MERKLEDLVSYLKTEIEKKEKELDHIRKVNKELESQIMFQIENGRSLDHL
SQTEPILGDDIPKASDVAPEGGHSFRPTGKRNMEPDDDDDEMKTYEGESS
KSGGADDA.

Orthology

View orthology data for BolC9t59801H-R-P