BolC9t59801H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolC9t59801H-R
Unique NameBolC9t59801H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length109
Homology
BLAST of BolC9t59801H-R vs. GenBank_protein
Match: KAF2536225.1 (hypothetical protein F2Q68_00023216 [Brassica cretica] >VDD34478.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 202 bits (514), Expect = 2.980e-65
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0
Query:    1 MERKLEDLVSYLKTEIEKKEKELDHIRKVNKELESQIMFQIENGRSLDHLSQTEPILGDDIPKASDVAPEGGHSFRPTGKRNMEPDDDDDEMKTYEGESSKSGGADDA 108
            MERKLEDLVSYLKTEIEKKEKELDHIRKVNKELESQIMFQIENGRSLDHLSQTEPILGDDIPKASDVAPEGGHSFRPTGKRNMEPDDDDDEMKTYEGESSKSGGADDA
Sbjct:    1 MERKLEDLVSYLKTEIEKKEKELDHIRKVNKELESQIMFQIENGRSLDHLSQTEPILGDDIPKASDVAPEGGHSFRPTGKRNMEPDDDDDEMKTYEGESSKSGGADDA 108          
BLAST of BolC9t59801H-R vs. GenBank_protein
Match: KAF3567993.1 (hypothetical protein DY000_02019653 [Brassica cretica])

HSP 1 Score: 199 bits (507), Expect = 3.480e-64
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0
Query:    1 MERKLEDLVSYLKTEIEKKEKELDHIRKVNKELESQIMFQIENGRSLDHLSQTEPILGDDIPKASDVAPEGGHSFRPTGKRNMEPDDDDDEMKTYEGESSKSGGADDA 108
            MERKLEDLVSY KTEIEKKEKELDHIRKVNKELESQIMFQIENGRSLDHLSQTEPILGDDIPKASDVAPEGGHSFRPTGKRNMEPDDDDDEMKTYEGESSKSGGADDA
Sbjct:    1 MERKLEDLVSYPKTEIEKKEKELDHIRKVNKELESQIMFQIENGRSLDHLSQTEPILGDDIPKASDVAPEGGHSFRPTGKRNMEPDDDDDEMKTYEGESSKSGGADDA 108          
BLAST of BolC9t59801H-R vs. GenBank_protein
Match: CAF1789706.1 (unnamed protein product [Brassica napus] >CAF2358348.1 unnamed protein product [Brassica napus] >CDY64731.1 BnaA10g30630D [Brassica napus])

HSP 1 Score: 178 bits (452), Expect = 7.750e-56
Identity = 99/108 (91.67%), Postives = 101/108 (93.52%), Query Frame = 0
Query:    1 MERKLEDLVSYLKTEIEKKEKELDHIRKVNKELESQIMFQIENGRSLDHLSQTEPILGDDIPKASDVAPEGGHSFRPTGKRNMEPDDDDDEMKTYEGESSKSGGADDA 108
            MERKLEDLVSYLKT+IEK+EKELDHIRK   ELESQIMFQIENGRSLDHLSQTEP LGDDIPKA DVAPEGG SFRPTGK NMEPDDDDDEMKTYEGESSKSGGADDA
Sbjct:    1 MERKLEDLVSYLKTKIEKREKELDHIRK---ELESQIMFQIENGRSLDHLSQTEPTLGDDIPKACDVAPEGGPSFRPTGKGNMEPDDDDDEMKTYEGESSKSGGADDA 105          
BLAST of BolC9t59801H-R vs. GenBank_protein
Match: KAG5377281.1 (hypothetical protein IGI04_041877 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 171 bits (433), Expect = 4.200e-47
Identity = 96/112 (85.71%), Postives = 98/112 (87.50%), Query Frame = 0
Query:    1 MERKLEDLVSYLKTEIEKKEKELDHIRKVN----------KELESQIMFQIENGRSLDHLSQTEPILGDDIPKASDVAPEGGHSFRPTGKRNMEPDDDDDEMKTYEGESSKS 102
            MERKLEDLVSYLKT+IEK+EKELDHIRKVN          KELESQIMFQIENGRSLDHLSQTEP LGDDIPKA DVAPEGG SFRPTGK NMEPDDDDDEMKTYEGESSKS
Sbjct:    1 MERKLEDLVSYLKTKIEKREKELDHIRKVNNSSIISEIHLKELESQIMFQIENGRSLDHLSQTEPTLGDDIPKACDVAPEGGPSFRPTGKGNMEPDDDDDEMKTYEGESSKS 112          
BLAST of BolC9t59801H-R vs. GenBank_protein
Match: KAG2262735.1 (hypothetical protein Bca52824_069814 [Brassica carinata])

HSP 1 Score: 155 bits (393), Expect = 5.470e-47
Identity = 89/108 (82.41%), Postives = 89/108 (82.41%), Query Frame = 0
Query:    1 MERKLEDLVSYLKTEIEKKEKELDHIRKVNKELESQIMFQIENGRSLDHLSQTEPILGDDIPKASDVAPEGGHSFRPTGKRNMEPDDDDDEMKTYEGESSKSGGADDA 108
            MERKLEDLVSYLKTEIEKKEKELDHIRKVN                   LSQTEPILGDDIPKASDVAPEGGHSFRPTGKRNMEPDDDDDEMKTYEGESSKSGGADDA
Sbjct:    1 MERKLEDLVSYLKTEIEKKEKELDHIRKVN--------------XXXXXLSQTEPILGDDIPKASDVAPEGGHSFRPTGKRNMEPDDDDDEMKTYEGESSKSGGADDA 94          
BLAST of BolC9t59801H-R vs. GenBank_protein
Match: KAF3503862.1 (hypothetical protein F2Q69_00045441 [Brassica cretica])

HSP 1 Score: 143 bits (360), Expect = 4.900e-42
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0
Query:    1 MERKLEDLVSYLKTEIEKKEKELDHIRKVNKELESQIMFQIENGRSLDHLSQTEPILGDDIPKASDVAPEGGHSFRP 77
            MERKLEDLVSYLKTEIEKKEKELDHIRKVNKELESQIMFQIENGRSLDHLSQTEPILGDDIPKASDVAPEGGH+F P
Sbjct:    1 MERKLEDLVSYLKTEIEKKEKELDHIRKVNKELESQIMFQIENGRSLDHLSQTEPILGDDIPKASDVAPEGGHTFFP 77          
BLAST of BolC9t59801H-R vs. GenBank_protein
Match: VDD20777.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 127 bits (318), Expect = 8.460e-36
Identity = 69/78 (88.46%), Postives = 72/78 (92.31%), Query Frame = 0
Query:    1 MERKLEDLVSYLKTEIEKKEKELDHIRKVNKELESQIMFQIENGRSLDHLSQTEPILGDDIPKASDVAPEGGHSFRPT 78
            ME+KLEDLVSYLKT+IEK+EKELDHIRK   ELESQIMFQIENGRSLDHLSQTEP LGDDIPKA DVAPEGG SFRPT
Sbjct:    1 MEKKLEDLVSYLKTKIEKREKELDHIRK---ELESQIMFQIENGRSLDHLSQTEPTLGDDIPKACDVAPEGGPSFRPT 75          
BLAST of BolC9t59801H-R vs. GenBank_protein
Match: XP_013610811.1 (PREDICTED: uncharacterized protein LOC106317559 [Brassica oleracea var. oleracea])

HSP 1 Score: 110 bits (276), Expect = 5.300e-29
Identity = 66/105 (62.86%), Postives = 76/105 (72.38%), Query Frame = 0
Query:    4 KLEDLVSYLKTEIEKKEKELDHIRKVNKELESQIMFQIENGRSLDHLSQTEPILGDDIPKASDVAPEGGHSFRPTGKRNMEPDDDDDEMKTYEGESSKSGGADDA 108
            K+ DL + +K  I++ E+E +   K+ KELE+QIM   E G      S  EPILGDD+PKASDVAPEGG SFRPTGK NMEP DDDDE KT EGESSKSGG DDA
Sbjct:    3 KVGDLETCIKNRIKEIEEEEERNLKILKELETQIMSPTEKGTQHPSTSINEPILGDDVPKASDVAPEGGPSFRPTGKGNMEPSDDDDEKKTNEGESSKSGGVDDA 107          
BLAST of BolC9t59801H-R vs. GenBank_protein
Match: KAF3504637.1 (hypothetical protein F2Q69_00045413 [Brassica cretica])

HSP 1 Score: 110 bits (276), Expect = 5.300e-29
Identity = 66/105 (62.86%), Postives = 76/105 (72.38%), Query Frame = 0
Query:    4 KLEDLVSYLKTEIEKKEKELDHIRKVNKELESQIMFQIENGRSLDHLSQTEPILGDDIPKASDVAPEGGHSFRPTGKRNMEPDDDDDEMKTYEGESSKSGGADDA 108
            K+ DL + +K  I++ E+E +   K+ KELE+QIM   E G      S  EPILGDD+PKASDVAPEGG SFRPTGK NMEP DDDDE KT EGESSKSGG DDA
Sbjct:    3 KVGDLETCIKNRIKEIEEEEERNLKILKELETQIMSPTEKGTQHPSTSINEPILGDDVPKASDVAPEGGPSFRPTGKGNMEPSDDDDEKKTNEGESSKSGGVDDA 107          
BLAST of BolC9t59801H-R vs. GenBank_protein
Match: XP_013715507.1 (uncharacterized protein LOC106419293 [Brassica napus] >XP_013715508.1 uncharacterized protein LOC106419294 [Brassica napus] >XP_013715510.1 uncharacterized protein LOC106419295 [Brassica napus] >XP_013715511.1 uncharacterized protein LOC106419296 [Brassica napus])

HSP 1 Score: 102 bits (253), Expect = 1.660e-25
Identity = 61/105 (58.10%), Postives = 74/105 (70.48%), Query Frame = 0
Query:    4 KLEDLVSYLKTEIEKKEKELDHIRKVNKELESQIMFQIENGRSLDHLSQTEPILGDDIPKASDVAPEGGHSFRPTGKRNMEPDDDDDEMKTYEGESSKSGGADDA 108
            K+ DL + +   I++ E+E +   K+ KELE+QIM   E G      S  +PILGDD+PKASDVAPEGG SFRP GK NM+P DDDDE KT EG+SSKSGG DDA
Sbjct:    3 KVGDLETCINNRIKEIEEEEERNLKILKELETQIMSPTEKGTQHPSTSINKPILGDDVPKASDVAPEGGPSFRPKGKGNMKPSDDDDEKKTNEGKSSKSGGVDDA 107          
The following BLAST results are available for this feature:
BLAST of BolC9t59801H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
KAF2536225.12.980e-65100.00hypothetical protein F2Q68_00023216 [Brassica cret... [more]
KAF3567993.13.480e-6499.07hypothetical protein DY000_02019653 [Brassica cret... [more]
CAF1789706.17.750e-5691.67unnamed protein product [Brassica napus] >CAF23583... [more]
KAG5377281.14.200e-4785.71hypothetical protein IGI04_041877 [Brassica rapa s... [more]
KAG2262735.15.470e-4782.41hypothetical protein Bca52824_069814 [Brassica car... [more]
KAF3503862.14.900e-4297.40hypothetical protein F2Q69_00045441 [Brassica cret... [more]
VDD20777.18.460e-3688.46unnamed protein product [Brassica rapa][more]
XP_013610811.15.300e-2962.86PREDICTED: uncharacterized protein LOC106317559 [B... [more]
KAF3504637.15.300e-2962.86hypothetical protein F2Q69_00045413 [Brassica cret... [more]
XP_013715507.11.660e-2558.10uncharacterized protein LOC106419293 [Brassica nap... [more]

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InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 2..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..108
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..108

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C9contigC9:60946254..60946580 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC9t59801H-RBolC9t59801H-RBrassica oleracea HDEMmRNAC9 60946254..60946580 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolC9t59801H-R-P ID=BolC9t59801H-R-P|Name=BolC9t59801H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=109bp
MERKLEDLVSYLKTEIEKKEKELDHIRKVNKELESQIMFQIENGRSLDHL
SQTEPILGDDIPKASDVAPEGGHSFRPTGKRNMEPDDDDDEMKTYEGESS
KSGGADDA.
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