BolC9t59569H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	BolC9t59569H-R
Unique Name	BolC9t59569H-R-P
Type	polypeptide
Organism	Brassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length	295

Homology

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BLAST of BolC9t59569H-R vs. GenBank_protein
Match: VDD34246.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 549 bits (1414), Expect = 2.430e-196
Identity = 294/294 (100.00%), Postives = 294/294 (100.00%), Query Frame = 0

Query:    1 MLREMPLRMNDQCAADEVMSLQKEEGNGTLTENRAKRKACGGNDINFIEVSDAGGKACLSVTTVKIRSKEGVAIELEVALGNGGSEGRIEANTTGHEVVVVDEQNDVLMEESCKGEENLRERNSKQGEPKVHRTSNMVKEACEEVKSVAYKRLWECQTEAFSNIIALEEMLKQCREKDQQKKAVSEIDDVSRLPLSRESCEELRKLAQKIESQLSEIIGSYAEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQINQRAKKRRVRRLQGIGVLRKSPRLQKLI 294
            MLREMPLRMNDQCAADEVMSLQKEEGNGTLTENRAKRKACGGNDINFIEVSDAGGKACLSVTTVKIRSKEGVAIELEVALGNGGSEGRIEANTTGHEVVVVDEQNDVLMEESCKGEENLRERNSKQGEPKVHRTSNMVKEACEEVKSVAYKRLWECQTEAFSNIIALEEMLKQCREKDQQKKAVSEIDDVSRLPLSRESCEELRKLAQKIESQLSEIIGSYAEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQINQRAKKRRVRRLQGIGVLRKSPRLQKLI
Sbjct:    1 MLREMPLRMNDQCAADEVMSLQKEEGNGTLTENRAKRKACGGNDINFIEVSDAGGKACLSVTTVKIRSKEGVAIELEVALGNGGSEGRIEANTTGHEVVVVDEQNDVLMEESCKGEENLRERNSKQGEPKVHRTSNMVKEACEEVKSVAYKRLWECQTEAFSNIIALEEMLKQCREKDQQKKAVSEIDDVSRLPLSRESCEELRKLAQKIESQLSEIIGSYAEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQINQRAKKRRVRRLQGIGVLRKSPRLQKLI 294

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BLAST of BolC9t59569H-R vs. GenBank_protein
Match: XP_013608494.1 (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC106315302, partial [Brassica oleracea var. oleracea])

HSP 1 Score: 526 bits (1355), Expect = 3.160e-186
Identity = 288/309 (93.20%), Postives = 289/309 (93.53%), Query Frame = 0

Query:    3 REMPLRMNDQCAADEVMSLQKEEGNG-----------------TLTENRAKRKACGGNDINFIEVSDAGGKACLSVTTVKIRSKEGVAIELEVALGNGGSEGRIEANTTGHEVVVVDEQNDVLMEESCKGEENLRERNSKQGEPKVHRTSNMVKEACEEVKSVAYKRLWECQTEAFSNIIALEEMLKQCREKDQQKKAVSEIDDVSRLPLSRESCEELRKLAQKIESQLSEIIGSYAEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQINQRAKKRRVRRLQGIGVLRKSPRLQKLI 294
            R MPLRMNDQCAADEVMSLQKEEGN                  +LTENRAKRKACGGNDINFIEVSDAGGKACLSVTTVKIRSKEGVAIELEVALGNGGSEGRIEANTTGHEVVVVDEQNDVLMEESCKGEENLRERNSKQGEPKVHRTSNMVKEACEEVKSVAYKRLWECQTEAFSNIIALEEMLKQCREKDQQKKAVSEIDDVSRLPLSRESCEELRKLAQKIESQLSEIIGSYAEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQINQRAKKRRVRRLQ IGVLRKSPRLQKLI
Sbjct:   57 RXMPLRMNDQCAADEVMSLQKEEGNNVETLKSGNHEVGLVEERSLTENRAKRKACGGNDINFIEVSDAGGKACLSVTTVKIRSKEGVAIELEVALGNGGSEGRIEANTTGHEVVVVDEQNDVLMEESCKGEENLRERNSKQGEPKVHRTSNMVKEACEEVKSVAYKRLWECQTEAFSNIIALEEMLKQCREKDQQKKAVSEIDDVSRLPLSRESCEELRKLAQKIESQLSEIIGSYAEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQINQRAKKRRVRRLQDIGVLRKSPRLQKLI 365

[Close]

BLAST of BolC9t59569H-R vs. GenBank_protein
Match: KAF3501271.1 (hypothetical protein F2Q69_00045188 [Brassica cretica])

HSP 1 Score: 516 bits (1330), Expect = 9.530e-184
Identity = 280/286 (97.90%), Postives = 280/286 (97.90%), Query Frame = 0

Query:    9 MNDQCAADEVMSLQKEEGNGTLTENRAKRKACGGNDINFIEVSDAGGKACLSVTTVKIRSKEGVAIELEVALGNGGSEGRIEANTTGHEVVVVDEQNDVLMEESCKGEENLRERNSKQGEPKVHRTSNMVKEACEEVKSVAYKRLWECQTEAFSNIIALEEMLKQCREKDQQKKAVSEIDDVSRLPLSRESCEELRKLAQKIESQLSEIIGSYAEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQINQRAKKRRVRRLQGIGVLRKSPRLQKLI 294
            MNDQCAADEVMSLQKEEGNGT     AKRKACGGNDINFIEVSDAGGKACLSVTTVKIRSKEGVAIELEVALGNGGSEGRIEANT GHEVVVVDEQNDVLMEESCKGEENLRERNSKQGEPKVHRTSNMVKEACEEVKSVAYKRLWECQTEAFSNIIALEEMLKQCREKDQQKKAVSEIDDVSRLPLSRESCEELRKLAQKIESQLSEIIGSYAEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQINQRAKKRRVRRLQGIGVLRKSPRLQKLI
Sbjct:    1 MNDQCAADEVMSLQKEEGNGT-----AKRKACGGNDINFIEVSDAGGKACLSVTTVKIRSKEGVAIELEVALGNGGSEGRIEANTKGHEVVVVDEQNDVLMEESCKGEENLRERNSKQGEPKVHRTSNMVKEACEEVKSVAYKRLWECQTEAFSNIIALEEMLKQCREKDQQKKAVSEIDDVSRLPLSRESCEELRKLAQKIESQLSEIIGSYAEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQINQRAKKRRVRRLQGIGVLRKSPRLQKLI 281

[Close]

BLAST of BolC9t59569H-R vs. GenBank_protein
Match: XP_022569886.1 (uncharacterized protein LOC111212605 [Brassica napus] >CAF1788584.1 unnamed protein product [Brassica napus])

HSP 1 Score: 438 bits (1127), Expect = 1.470e-150
Identity = 249/297 (83.84%), Postives = 263/297 (88.55%), Query Frame = 0

Query:    4 EMPLRMNDQCAADEVMSLQKEEG---NGTLTENR--AKRKACGGNDINFIEVSDAGGKACLSVTTVKIRSKEGV-AIELEVALGNGGSEGRIEANTTGHEVVVVDEQNDVLMEESCKGEENLRERNSKQGEPKVHRTSNMVKEACEEVKSVAYKRLWECQTEAFSNIIALEEMLKQCREKDQQKKAVSEIDDVSRLPLSRESCEELRKLAQKIESQLSEIIGSYAEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQINQRAKKRRVRRLQGIGVLRKSPRLQKLI 294
            EMPLRMNDQCAADEVMSL+ ++G      LTE+R   KRKACGGND+N  EVSD GGKACLSVTTVK  SKE V ++E EVAL NGG+EGRIEAN+ GHE+VV+DEQNDVLMEESCKGEENLRE NSKQGEPK+HRTSNMVKEA  EVKSVAYKRLWECQTEA SNIIALEEMLKQCREKDQQKKAV+EID VSRLPLS ESCEELRKLAQKIESQLSEIIGSY EAVVPCYESRGCET+ ISKEVFHETP KTSK HEQKERE  SQIN RAKKRRVRRLQ IGVLRKSPRLQKLI
Sbjct:  135 EMPLRMNDQCAADEVMSLRNDKGIVEERILTESRDSPKRKACGGNDVNVTEVSDTGGKACLSVTTVKTSSKEVVVSVEPEVALVNGGTEGRIEANSEGHELVVLDEQNDVLMEESCKGEENLRETNSKQGEPKLHRTSNMVKEASVEVKSVAYKRLWECQTEACSNIIALEEMLKQCREKDQQKKAVTEIDGVSRLPLSMESCEELRKLAQKIESQLSEIIGSYDEAVVPCYESRGCETKSISKEVFHETPTKTSKHHEQKERE-QSQINPRAKKRRVRRLQDIGVLRKSPRLQKLI 430

[Close]

BLAST of BolC9t59569H-R vs. GenBank_protein
Match: XP_022549476.1 (uncharacterized protein LOC106419272 [Brassica napus])

HSP 1 Score: 423 bits (1088), Expect = 2.250e-144
Identity = 245/299 (81.94%), Postives = 254/299 (84.95%), Query Frame = 0

Query:    4 EMPLRMNDQCAADEVMSLQKEEGN---GTLTENRA--KRKACGGNDINFIEVSDAGGKACLSVTTVKIRSKEGVAIELEVALGNGGSEGRIEANTTG---HEVVVVDEQNDVLMEESCKGEENLRERNSKQGEPKVHRTSNMVKEACEEVKSVAYKRLWECQTEAFSNIIALEEMLKQCREKDQQKKAVSEIDDVSRLPLSRESCEELRKLAQKIESQLSEIIGSYAEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQINQRAKKRRVRRLQGIGVLRKSPRLQKLI 294
            EMPL MNDQCAADEVMSLQ ++G      LTE+R   KRKACGGNDINFIEVSD GGKACLSVTTVK RS EGVA+E EVAL   G EGRIEAN+ G   HE+VVVDEQNDVL+EESCKGEENLRER           TSN VKEACEE KSVAYKRLWE QTEA SNIIALE+MLKQCREKDQQKK V EID VSRLPLS+ESCEELRKLAQKIESQLSEII SY EAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQIN RAKKRRVRRLQ IGVLRKSPRLQKLI
Sbjct:  161 EMPLIMNDQCAADEVMSLQNDKGTVEERILTESRTSPKRKACGGNDINFIEVSDTGGKACLSVTTVKTRSIEGVAVESEVALEKSGGEGRIEANSEGGELHELVVVDEQNDVLIEESCKGEENLRER-----------TSNTVKEACEEGKSVAYKRLWESQTEACSNIIALEKMLKQCREKDQQKKVVIEIDGVSRLPLSKESCEELRKLAQKIESQLSEIIDSYDEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQINPRAKKRRVRRLQDIGVLRKSPRLQKLI 448

[Close]

BLAST of BolC9t59569H-R vs. GenBank_protein
Match: KAG5377138.1 (hypothetical protein IGI04_041734 [Brassica rapa subsp. trilocularis] >RID42519.1 hypothetical protein BRARA_J02398 [Brassica rapa])

HSP 1 Score: 415 bits (1067), Expect = 1.540e-141
Identity = 244/301 (81.06%), Postives = 253/301 (84.05%), Query Frame = 0

Query:    4 EMPLRMNDQCAADEVMSLQKEEGN---GTLTENRA--KRKACGGNDINFIEVSDAGGKACLSVTTVKIRSKEGVAIELEVALGNGGSEGRIEANTTG---HEVVVVDEQNDVLMEESCKGEENLRERNSKQGEPKVHRTSNMVKEACEEVKSVAYKRLWECQTEAFSNIIALEEMLKQCREKDQQKKAVSEIDDVSRLPLSRESCEELRKLAQKIESQLSEIIGSYAEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQINQRAKKRRVRRLQGIG--VLRKSPRLQKLI 294
            EMPL MNDQCAADEVMSLQ ++G      LTE+R   KRKACGGNDINFIEVSD GGKACLSVTTVK RS EGVA+E EVAL   G EGRIEAN+ G   HE+VVVDEQNDVL+EESCKGEENLRER           TSN VKEACEE KSVAYKRLWE QTEA SNIIALE+MLKQCREKDQQKK V EID VSRLPLS+ESCEELRKLAQKIESQLSEII SY EAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKE EIDSQIN RAKKRRVRRLQ IG  VLRKSPRLQKLI
Sbjct:  135 EMPLIMNDQCAADEVMSLQNDKGTVEERILTESRTSPKRKACGGNDINFIEVSDTGGKACLSVTTVKTRSIEGVAVESEVALEKSGGEGRIEANSEGGELHELVVVDEQNDVLIEESCKGEENLRER-----------TSNTVKEACEEGKSVAYKRLWESQTEACSNIIALEKMLKQCREKDQQKKVVIEIDGVSRLPLSKESCEELRKLAQKIESQLSEIIDSYDEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEIEIDSQINPRAKKRRVRRLQDIGKAVLRKSPRLQKLI 424

[Close]

BLAST of BolC9t59569H-R vs. GenBank_protein
Match: VDD20367.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 414 bits (1064), Expect = 4.410e-141
Identity = 243/301 (80.73%), Postives = 253/301 (84.05%), Query Frame = 0

Query:    4 EMPLRMNDQCAADEVMSLQKEEGN---GTLTENRA--KRKACGGNDINFIEVSDAGGKACLSVTTVKIRSKEGVAIELEVALGNGGSEGRIEANTTG---HEVVVVDEQNDVLMEESCKGEENLRERNSKQGEPKVHRTSNMVKEACEEVKSVAYKRLWECQTEAFSNIIALEEMLKQCREKDQQKKAVSEIDDVSRLPLSRESCEELRKLAQKIESQLSEIIGSYAEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQINQRAKKRRVRRLQGIG--VLRKSPRLQKLI 294
            EMPL MNDQCAADEVMSLQ ++G      LTE+R   KRKACGGNDINFIEVSD GGKACLSVTTVK RS EGVA+E EVAL   G EGRIEAN+ G   HE+VVVDEQNDVL+EESCKGEENLRER           TSN +KEACEE KSVAYKRLWE QTEA SNIIALE+MLKQCREKDQQKK V EID VSRLPLS+ESCEELRKLAQKIESQLSEII SY EAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKE EIDSQIN RAKKRRVRRLQ IG  VLRKSPRLQKLI
Sbjct:  135 EMPLIMNDQCAADEVMSLQNDKGTVEERILTESRTSPKRKACGGNDINFIEVSDTGGKACLSVTTVKTRSIEGVAVESEVALEKSGGEGRIEANSEGGELHELVVVDEQNDVLIEESCKGEENLRER-----------TSNTMKEACEEGKSVAYKRLWESQTEACSNIIALEKMLKQCREKDQQKKVVIEIDGVSRLPLSKESCEELRKLAQKIESQLSEIIDSYDEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEIEIDSQINPRAKKRRVRRLQDIGKAVLRKSPRLQKLI 424

[Close]

BLAST of BolC9t59569H-R vs. GenBank_protein
Match: CDY21566.1 (BnaC09g47260D [Brassica napus])

HSP 1 Score: 407 bits (1046), Expect = 1.530e-138
Identity = 230/277 (83.03%), Postives = 244/277 (88.09%), Query Frame = 0

Query:    4 EMPLRMNDQCAADEVMSLQKEEG---NGTLTENR--AKRKACGGNDINFIEVSDAGGKACLSVTTVKIRSKEGV-AIELEVALGNGGSEGRIEANTTGHEVVVVDEQNDVLMEESCKGEENLRERNSKQGEPKVHRTSNMVKEACEEVKSVAYKRLWECQTEAFSNIIALEEMLKQCREKDQQKKAVSEIDDVSRLPLSRESCEELRKLAQKIESQLSEIIGSYAEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQINQRAKKRR 274
            EMPLRMNDQCAADEVMSL+ ++G      LTE+R   KRKACGGND+N  EVSD GGKACLSVTTVK  SKE V ++E EVAL NGG+EGRIEAN+ GHE+VV+DEQNDVLMEESCKGEENLRE NSKQGEPK+HRTSNMVKEA  EVKSVAYKRLWECQTEA SNIIALEEMLKQCREKDQQKKAV+EID VSRLPLS ESCEELRKLAQKIESQLSEIIGSY EAVVPCYESRGCET+ ISKEVFHETP KTSK HEQKERE  SQIN RAKKRR
Sbjct:  135 EMPLRMNDQCAADEVMSLRNDKGIVEERILTESRDSPKRKACGGNDVNVTEVSDTGGKACLSVTTVKTSSKEVVVSVEPEVALVNGGTEGRIEANSEGHELVVLDEQNDVLMEESCKGEENLRETNSKQGEPKLHRTSNMVKEASVEVKSVAYKRLWECQTEACSNIIALEEMLKQCREKDQQKKAVTEIDGVSRLPLSMESCEELRKLAQKIESQLSEIIGSYDEAVVPCYESRGCETKSISKEVFHETPTKTSKHHEQKERE-QSQINPRAKKRR 410

[Close]

BLAST of BolC9t59569H-R vs. GenBank_protein
Match: XP_009122499.1 (uncharacterized protein LOC103847192 isoform X1 [Brassica rapa] >CAF2354650.1 unnamed protein product [Brassica napus])

HSP 1 Score: 400 bits (1028), Expect = 1.280e-135
Identity = 234/296 (79.05%), Postives = 249/296 (84.12%), Query Frame = 0

Query:    4 EMPLRMNDQCAADEVMSLQKEEG---NGTLTENR--AKRKACGGNDINFIEVSDAGGKACLSVTTVKIRSKEGVAIELEVALGNGGSEGRIEANTTGHEVVVVDEQNDVLMEESCKGEENLRERNSKQGEPKVHRTSNMVKEACEEVKSVAYKRLWECQTEAFSNIIALEEMLKQCREKDQQKKAVSEIDDVSRLPLSRESCEELRKLAQKIESQLSEIIGSYAEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQINQRAKKRRVRRLQGIGVLRKSPRLQKLI 294
            E+ LR+NDQCAADEVMSLQ ++      +LTE+R   KRKACGGN IN I VS  G  ACLSVTTVK RS EGVA+E EVAL   GSEG         E+VV+DEQNDVLMEESCKGEE+LRE NSKQGEPK+HRTSNM+KEAC EVKSVAYKRLWECQTEA SNIIALE+MLKQCREK QQKKAVSEIDDVSRLPLS+ESCEELR LAQKIESQLS IIGSY EAVVPCYESRGCET+ ISKEVFHETP KTSK HEQKERE  SQIN RAKKRRVRRLQ IGVLRKSPRLQKLI
Sbjct:  135 EVALRVNDQCAADEVMSLQNDKRIVEERSLTESRDSPKRKACGGNYINVIGVSGTGANACLSVTTVKTRSIEGVAVESEVALEKSGSEGG-----ELRELVVLDEQNDVLMEESCKGEESLRETNSKQGEPKLHRTSNMMKEACVEVKSVAYKRLWECQTEACSNIIALEKMLKQCREKGQQKKAVSEIDDVSRLPLSKESCEELRNLAQKIESQLSGIIGSYDEAVVPCYESRGCETKSISKEVFHETPTKTSKHHEQKERE-QSQINPRAKKRRVRRLQDIGVLRKSPRLQKLI 424

[Close]

BLAST of BolC9t59569H-R vs. GenBank_protein
Match: XP_033137471.1 (uncharacterized protein LOC103847192 isoform X2 [Brassica rapa])

HSP 1 Score: 374 bits (960), Expect = 1.820e-125
Identity = 225/296 (76.01%), Postives = 239/296 (80.74%), Query Frame = 0

Query:    4 EMPLRMNDQCAADEVMSLQKEEG---NGTLTENR--AKRKACGGNDINFIEVSDAGGKACLSVTTVKIRSKEGVAIELEVALGNGGSEGRIEANTTGHEVVVVDEQNDVLMEESCKGEENLRERNSKQGEPKVHRTSNMVKEACEEVKSVAYKRLWECQTEAFSNIIALEEMLKQCREKDQQKKAVSEIDDVSRLPLSRESCEELRKLAQKIESQLSEIIGSYAEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQINQRAKKRRVRRLQGIGVLRKSPRLQKLI 294
            E+ LR+NDQCAADEVMSLQ ++      +LTE+R   KRKACGGN IN I VS  G  ACLSVTTVK RS EGVA+E EVAL   GSEG         E+VV+DEQNDVLMEESCKGEE+LRER           TSNM+KEAC EVKSVAYKRLWECQTEA SNIIALE+MLKQCREK QQKKAVSEIDDVSRLPLS+ESCEELR LAQKIESQLS IIGSY EAVVPCYESRGCET+ ISKEVFHETP KTSK HEQKERE  SQIN RAKKRRVRRLQ IGVLRKSPRLQKLI
Sbjct:  135 EVALRVNDQCAADEVMSLQNDKRIVEERSLTESRDSPKRKACGGNYINVIGVSGTGANACLSVTTVKTRSIEGVAVESEVALEKSGSEGG-----ELRELVVLDEQNDVLMEESCKGEESLRER-----------TSNMMKEACVEVKSVAYKRLWECQTEACSNIIALEKMLKQCREKGQQKKAVSEIDDVSRLPLSKESCEELRNLAQKIESQLSGIIGSYDEAVVPCYESRGCETKSISKEVFHETPTKTSKHHEQKERE-QSQINPRAKKRRVRRLQDIGVLRKSPRLQKLI 413

The following BLAST results are available for this feature:

BLAST of BolC9t59569H-R vs. GenBank_protein

BLAST of BolC9t59569H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20


Match Name	E-value	Identity	Description
VDD34246.1	2.430e-196	100.00	unnamed protein product [Brassica oleracea]	[more]
XP_013608494.1	3.160e-186	93.20	PREDICTED: LOW QUALITY PROTEIN: uncharacterized pr...	[more]
KAF3501271.1	9.530e-184	97.90	hypothetical protein F2Q69_00045188 [Brassica cret...	[more]
XP_022569886.1	1.470e-150	83.84	uncharacterized protein LOC111212605 [Brassica nap...	[more]
XP_022549476.1	2.250e-144	81.94	uncharacterized protein LOC106419272 [Brassica nap...	[more]
KAG5377138.1	1.540e-141	81.06	hypothetical protein IGI04_041734 [Brassica rapa s...	[more]
VDD20367.1	4.410e-141	80.73	unnamed protein product [Brassica rapa]	[more]
CDY21566.1	1.530e-138	83.03	BnaC09g47260D [Brassica napus]	[more]
XP_009122499.1	1.280e-135	79.05	uncharacterized protein LOC103847192 isoform X1 [B...	[more]
XP_033137471.1	1.820e-125	76.01	uncharacterized protein LOC103847192 isoform X2 [B...	[more]

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GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030261	chromosome condensation
biological_process	GO:0031936	negative regulation of chromatin silencing
biological_process	GO:0045910	negative regulation of DNA recombination
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0016584	nucleosome positioning
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0000786	nucleosome
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0031492	nucleosomal DNA binding

InterPro

Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 247..269

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C9	contig	C9:59860560..59861687 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
Interproscan on OGS1.0	2022-03-19
Blast2go on OGS1.0	2022-03-19
Diamond on OGS1.0 vs NR	2022-03-19
Brassica oleracea HDEM OGS1.0	2018-11-02

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
BolC9t59569H-R	BolC9t59569H-R	Brassica oleracea HDEM	mRNA	C9 59860560..59861687 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>BolC9t59569H-R-P ID=BolC9t59569H-R-P|Name=BolC9t59569H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=295bp
MLREMPLRMNDQCAADEVMSLQKEEGNGTLTENRAKRKACGGNDINFIEV
SDAGGKACLSVTTVKIRSKEGVAIELEVALGNGGSEGRIEANTTGHEVVV
VDEQNDVLMEESCKGEENLRERNSKQGEPKVHRTSNMVKEACEEVKSVAY
KRLWECQTEAFSNIIALEEMLKQCREKDQQKKAVSEIDDVSRLPLSRESC
EELRKLAQKIESQLSEIIGSYAEAVVPCYESRGCETEGISKEVFHETPMK
TSKQHEQKEREIDSQINQRAKKRRVRRLQGIGVLRKSPRLQKLI.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **Biological Process**
Term	Definition
GO:0045910	negative regulation of DNA recombination
GO:0031936	negative regulation of chromatin silencing
GO:0030261	chromosome condensation
GO:0016584	nucleosome positioning
GO:0006334	nucleosome assembly

Vocabulary: **Molecular Function**
Term	Definition
GO:0031492	nucleosomal DNA binding
GO:0003690	double-stranded DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005730	nucleolus
GO:0000786	nucleosome

Orthology

View orthology data for BolC9t59569H-R-P