BolC9t59569H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolC9t59569H-R
Unique NameBolC9t59569H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length295
Homology
BLAST of BolC9t59569H-R vs. GenBank_protein
Match: VDD34246.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 549 bits (1414), Expect = 2.430e-196
Identity = 294/294 (100.00%), Postives = 294/294 (100.00%), Query Frame = 0
Query:    1 MLREMPLRMNDQCAADEVMSLQKEEGNGTLTENRAKRKACGGNDINFIEVSDAGGKACLSVTTVKIRSKEGVAIELEVALGNGGSEGRIEANTTGHEVVVVDEQNDVLMEESCKGEENLRERNSKQGEPKVHRTSNMVKEACEEVKSVAYKRLWECQTEAFSNIIALEEMLKQCREKDQQKKAVSEIDDVSRLPLSRESCEELRKLAQKIESQLSEIIGSYAEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQINQRAKKRRVRRLQGIGVLRKSPRLQKLI 294
            MLREMPLRMNDQCAADEVMSLQKEEGNGTLTENRAKRKACGGNDINFIEVSDAGGKACLSVTTVKIRSKEGVAIELEVALGNGGSEGRIEANTTGHEVVVVDEQNDVLMEESCKGEENLRERNSKQGEPKVHRTSNMVKEACEEVKSVAYKRLWECQTEAFSNIIALEEMLKQCREKDQQKKAVSEIDDVSRLPLSRESCEELRKLAQKIESQLSEIIGSYAEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQINQRAKKRRVRRLQGIGVLRKSPRLQKLI
Sbjct:    1 MLREMPLRMNDQCAADEVMSLQKEEGNGTLTENRAKRKACGGNDINFIEVSDAGGKACLSVTTVKIRSKEGVAIELEVALGNGGSEGRIEANTTGHEVVVVDEQNDVLMEESCKGEENLRERNSKQGEPKVHRTSNMVKEACEEVKSVAYKRLWECQTEAFSNIIALEEMLKQCREKDQQKKAVSEIDDVSRLPLSRESCEELRKLAQKIESQLSEIIGSYAEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQINQRAKKRRVRRLQGIGVLRKSPRLQKLI 294          
BLAST of BolC9t59569H-R vs. GenBank_protein
Match: XP_013608494.1 (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC106315302, partial [Brassica oleracea var. oleracea])

HSP 1 Score: 526 bits (1355), Expect = 3.160e-186
Identity = 288/309 (93.20%), Postives = 289/309 (93.53%), Query Frame = 0
Query:    3 REMPLRMNDQCAADEVMSLQKEEGNG-----------------TLTENRAKRKACGGNDINFIEVSDAGGKACLSVTTVKIRSKEGVAIELEVALGNGGSEGRIEANTTGHEVVVVDEQNDVLMEESCKGEENLRERNSKQGEPKVHRTSNMVKEACEEVKSVAYKRLWECQTEAFSNIIALEEMLKQCREKDQQKKAVSEIDDVSRLPLSRESCEELRKLAQKIESQLSEIIGSYAEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQINQRAKKRRVRRLQGIGVLRKSPRLQKLI 294
            R MPLRMNDQCAADEVMSLQKEEGN                  +LTENRAKRKACGGNDINFIEVSDAGGKACLSVTTVKIRSKEGVAIELEVALGNGGSEGRIEANTTGHEVVVVDEQNDVLMEESCKGEENLRERNSKQGEPKVHRTSNMVKEACEEVKSVAYKRLWECQTEAFSNIIALEEMLKQCREKDQQKKAVSEIDDVSRLPLSRESCEELRKLAQKIESQLSEIIGSYAEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQINQRAKKRRVRRLQ IGVLRKSPRLQKLI
Sbjct:   57 RXMPLRMNDQCAADEVMSLQKEEGNNVETLKSGNHEVGLVEERSLTENRAKRKACGGNDINFIEVSDAGGKACLSVTTVKIRSKEGVAIELEVALGNGGSEGRIEANTTGHEVVVVDEQNDVLMEESCKGEENLRERNSKQGEPKVHRTSNMVKEACEEVKSVAYKRLWECQTEAFSNIIALEEMLKQCREKDQQKKAVSEIDDVSRLPLSRESCEELRKLAQKIESQLSEIIGSYAEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQINQRAKKRRVRRLQDIGVLRKSPRLQKLI 365          
BLAST of BolC9t59569H-R vs. GenBank_protein
Match: KAF3501271.1 (hypothetical protein F2Q69_00045188 [Brassica cretica])

HSP 1 Score: 516 bits (1330), Expect = 9.530e-184
Identity = 280/286 (97.90%), Postives = 280/286 (97.90%), Query Frame = 0
Query:    9 MNDQCAADEVMSLQKEEGNGTLTENRAKRKACGGNDINFIEVSDAGGKACLSVTTVKIRSKEGVAIELEVALGNGGSEGRIEANTTGHEVVVVDEQNDVLMEESCKGEENLRERNSKQGEPKVHRTSNMVKEACEEVKSVAYKRLWECQTEAFSNIIALEEMLKQCREKDQQKKAVSEIDDVSRLPLSRESCEELRKLAQKIESQLSEIIGSYAEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQINQRAKKRRVRRLQGIGVLRKSPRLQKLI 294
            MNDQCAADEVMSLQKEEGNGT     AKRKACGGNDINFIEVSDAGGKACLSVTTVKIRSKEGVAIELEVALGNGGSEGRIEANT GHEVVVVDEQNDVLMEESCKGEENLRERNSKQGEPKVHRTSNMVKEACEEVKSVAYKRLWECQTEAFSNIIALEEMLKQCREKDQQKKAVSEIDDVSRLPLSRESCEELRKLAQKIESQLSEIIGSYAEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQINQRAKKRRVRRLQGIGVLRKSPRLQKLI
Sbjct:    1 MNDQCAADEVMSLQKEEGNGT-----AKRKACGGNDINFIEVSDAGGKACLSVTTVKIRSKEGVAIELEVALGNGGSEGRIEANTKGHEVVVVDEQNDVLMEESCKGEENLRERNSKQGEPKVHRTSNMVKEACEEVKSVAYKRLWECQTEAFSNIIALEEMLKQCREKDQQKKAVSEIDDVSRLPLSRESCEELRKLAQKIESQLSEIIGSYAEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQINQRAKKRRVRRLQGIGVLRKSPRLQKLI 281          
BLAST of BolC9t59569H-R vs. GenBank_protein
Match: XP_022569886.1 (uncharacterized protein LOC111212605 [Brassica napus] >CAF1788584.1 unnamed protein product [Brassica napus])

HSP 1 Score: 438 bits (1127), Expect = 1.470e-150
Identity = 249/297 (83.84%), Postives = 263/297 (88.55%), Query Frame = 0
Query:    4 EMPLRMNDQCAADEVMSLQKEEG---NGTLTENR--AKRKACGGNDINFIEVSDAGGKACLSVTTVKIRSKEGV-AIELEVALGNGGSEGRIEANTTGHEVVVVDEQNDVLMEESCKGEENLRERNSKQGEPKVHRTSNMVKEACEEVKSVAYKRLWECQTEAFSNIIALEEMLKQCREKDQQKKAVSEIDDVSRLPLSRESCEELRKLAQKIESQLSEIIGSYAEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQINQRAKKRRVRRLQGIGVLRKSPRLQKLI 294
            EMPLRMNDQCAADEVMSL+ ++G      LTE+R   KRKACGGND+N  EVSD GGKACLSVTTVK  SKE V ++E EVAL NGG+EGRIEAN+ GHE+VV+DEQNDVLMEESCKGEENLRE NSKQGEPK+HRTSNMVKEA  EVKSVAYKRLWECQTEA SNIIALEEMLKQCREKDQQKKAV+EID VSRLPLS ESCEELRKLAQKIESQLSEIIGSY EAVVPCYESRGCET+ ISKEVFHETP KTSK HEQKERE  SQIN RAKKRRVRRLQ IGVLRKSPRLQKLI
Sbjct:  135 EMPLRMNDQCAADEVMSLRNDKGIVEERILTESRDSPKRKACGGNDVNVTEVSDTGGKACLSVTTVKTSSKEVVVSVEPEVALVNGGTEGRIEANSEGHELVVLDEQNDVLMEESCKGEENLRETNSKQGEPKLHRTSNMVKEASVEVKSVAYKRLWECQTEACSNIIALEEMLKQCREKDQQKKAVTEIDGVSRLPLSMESCEELRKLAQKIESQLSEIIGSYDEAVVPCYESRGCETKSISKEVFHETPTKTSKHHEQKERE-QSQINPRAKKRRVRRLQDIGVLRKSPRLQKLI 430          
BLAST of BolC9t59569H-R vs. GenBank_protein
Match: XP_022549476.1 (uncharacterized protein LOC106419272 [Brassica napus])

HSP 1 Score: 423 bits (1088), Expect = 2.250e-144
Identity = 245/299 (81.94%), Postives = 254/299 (84.95%), Query Frame = 0
Query:    4 EMPLRMNDQCAADEVMSLQKEEGN---GTLTENRA--KRKACGGNDINFIEVSDAGGKACLSVTTVKIRSKEGVAIELEVALGNGGSEGRIEANTTG---HEVVVVDEQNDVLMEESCKGEENLRERNSKQGEPKVHRTSNMVKEACEEVKSVAYKRLWECQTEAFSNIIALEEMLKQCREKDQQKKAVSEIDDVSRLPLSRESCEELRKLAQKIESQLSEIIGSYAEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQINQRAKKRRVRRLQGIGVLRKSPRLQKLI 294
            EMPL MNDQCAADEVMSLQ ++G      LTE+R   KRKACGGNDINFIEVSD GGKACLSVTTVK RS EGVA+E EVAL   G EGRIEAN+ G   HE+VVVDEQNDVL+EESCKGEENLRER           TSN VKEACEE KSVAYKRLWE QTEA SNIIALE+MLKQCREKDQQKK V EID VSRLPLS+ESCEELRKLAQKIESQLSEII SY EAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQIN RAKKRRVRRLQ IGVLRKSPRLQKLI
Sbjct:  161 EMPLIMNDQCAADEVMSLQNDKGTVEERILTESRTSPKRKACGGNDINFIEVSDTGGKACLSVTTVKTRSIEGVAVESEVALEKSGGEGRIEANSEGGELHELVVVDEQNDVLIEESCKGEENLRER-----------TSNTVKEACEEGKSVAYKRLWESQTEACSNIIALEKMLKQCREKDQQKKVVIEIDGVSRLPLSKESCEELRKLAQKIESQLSEIIDSYDEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQINPRAKKRRVRRLQDIGVLRKSPRLQKLI 448          
BLAST of BolC9t59569H-R vs. GenBank_protein
Match: KAG5377138.1 (hypothetical protein IGI04_041734 [Brassica rapa subsp. trilocularis] >RID42519.1 hypothetical protein BRARA_J02398 [Brassica rapa])

HSP 1 Score: 415 bits (1067), Expect = 1.540e-141
Identity = 244/301 (81.06%), Postives = 253/301 (84.05%), Query Frame = 0
Query:    4 EMPLRMNDQCAADEVMSLQKEEGN---GTLTENRA--KRKACGGNDINFIEVSDAGGKACLSVTTVKIRSKEGVAIELEVALGNGGSEGRIEANTTG---HEVVVVDEQNDVLMEESCKGEENLRERNSKQGEPKVHRTSNMVKEACEEVKSVAYKRLWECQTEAFSNIIALEEMLKQCREKDQQKKAVSEIDDVSRLPLSRESCEELRKLAQKIESQLSEIIGSYAEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQINQRAKKRRVRRLQGIG--VLRKSPRLQKLI 294
            EMPL MNDQCAADEVMSLQ ++G      LTE+R   KRKACGGNDINFIEVSD GGKACLSVTTVK RS EGVA+E EVAL   G EGRIEAN+ G   HE+VVVDEQNDVL+EESCKGEENLRER           TSN VKEACEE KSVAYKRLWE QTEA SNIIALE+MLKQCREKDQQKK V EID VSRLPLS+ESCEELRKLAQKIESQLSEII SY EAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKE EIDSQIN RAKKRRVRRLQ IG  VLRKSPRLQKLI
Sbjct:  135 EMPLIMNDQCAADEVMSLQNDKGTVEERILTESRTSPKRKACGGNDINFIEVSDTGGKACLSVTTVKTRSIEGVAVESEVALEKSGGEGRIEANSEGGELHELVVVDEQNDVLIEESCKGEENLRER-----------TSNTVKEACEEGKSVAYKRLWESQTEACSNIIALEKMLKQCREKDQQKKVVIEIDGVSRLPLSKESCEELRKLAQKIESQLSEIIDSYDEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEIEIDSQINPRAKKRRVRRLQDIGKAVLRKSPRLQKLI 424          
BLAST of BolC9t59569H-R vs. GenBank_protein
Match: VDD20367.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 414 bits (1064), Expect = 4.410e-141
Identity = 243/301 (80.73%), Postives = 253/301 (84.05%), Query Frame = 0
Query:    4 EMPLRMNDQCAADEVMSLQKEEGN---GTLTENRA--KRKACGGNDINFIEVSDAGGKACLSVTTVKIRSKEGVAIELEVALGNGGSEGRIEANTTG---HEVVVVDEQNDVLMEESCKGEENLRERNSKQGEPKVHRTSNMVKEACEEVKSVAYKRLWECQTEAFSNIIALEEMLKQCREKDQQKKAVSEIDDVSRLPLSRESCEELRKLAQKIESQLSEIIGSYAEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQINQRAKKRRVRRLQGIG--VLRKSPRLQKLI 294
            EMPL MNDQCAADEVMSLQ ++G      LTE+R   KRKACGGNDINFIEVSD GGKACLSVTTVK RS EGVA+E EVAL   G EGRIEAN+ G   HE+VVVDEQNDVL+EESCKGEENLRER           TSN +KEACEE KSVAYKRLWE QTEA SNIIALE+MLKQCREKDQQKK V EID VSRLPLS+ESCEELRKLAQKIESQLSEII SY EAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKE EIDSQIN RAKKRRVRRLQ IG  VLRKSPRLQKLI
Sbjct:  135 EMPLIMNDQCAADEVMSLQNDKGTVEERILTESRTSPKRKACGGNDINFIEVSDTGGKACLSVTTVKTRSIEGVAVESEVALEKSGGEGRIEANSEGGELHELVVVDEQNDVLIEESCKGEENLRER-----------TSNTMKEACEEGKSVAYKRLWESQTEACSNIIALEKMLKQCREKDQQKKVVIEIDGVSRLPLSKESCEELRKLAQKIESQLSEIIDSYDEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEIEIDSQINPRAKKRRVRRLQDIGKAVLRKSPRLQKLI 424          
BLAST of BolC9t59569H-R vs. GenBank_protein
Match: CDY21566.1 (BnaC09g47260D [Brassica napus])

HSP 1 Score: 407 bits (1046), Expect = 1.530e-138
Identity = 230/277 (83.03%), Postives = 244/277 (88.09%), Query Frame = 0
Query:    4 EMPLRMNDQCAADEVMSLQKEEG---NGTLTENR--AKRKACGGNDINFIEVSDAGGKACLSVTTVKIRSKEGV-AIELEVALGNGGSEGRIEANTTGHEVVVVDEQNDVLMEESCKGEENLRERNSKQGEPKVHRTSNMVKEACEEVKSVAYKRLWECQTEAFSNIIALEEMLKQCREKDQQKKAVSEIDDVSRLPLSRESCEELRKLAQKIESQLSEIIGSYAEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQINQRAKKRR 274
            EMPLRMNDQCAADEVMSL+ ++G      LTE+R   KRKACGGND+N  EVSD GGKACLSVTTVK  SKE V ++E EVAL NGG+EGRIEAN+ GHE+VV+DEQNDVLMEESCKGEENLRE NSKQGEPK+HRTSNMVKEA  EVKSVAYKRLWECQTEA SNIIALEEMLKQCREKDQQKKAV+EID VSRLPLS ESCEELRKLAQKIESQLSEIIGSY EAVVPCYESRGCET+ ISKEVFHETP KTSK HEQKERE  SQIN RAKKRR
Sbjct:  135 EMPLRMNDQCAADEVMSLRNDKGIVEERILTESRDSPKRKACGGNDVNVTEVSDTGGKACLSVTTVKTSSKEVVVSVEPEVALVNGGTEGRIEANSEGHELVVLDEQNDVLMEESCKGEENLRETNSKQGEPKLHRTSNMVKEASVEVKSVAYKRLWECQTEACSNIIALEEMLKQCREKDQQKKAVTEIDGVSRLPLSMESCEELRKLAQKIESQLSEIIGSYDEAVVPCYESRGCETKSISKEVFHETPTKTSKHHEQKERE-QSQINPRAKKRR 410          
BLAST of BolC9t59569H-R vs. GenBank_protein
Match: XP_009122499.1 (uncharacterized protein LOC103847192 isoform X1 [Brassica rapa] >CAF2354650.1 unnamed protein product [Brassica napus])

HSP 1 Score: 400 bits (1028), Expect = 1.280e-135
Identity = 234/296 (79.05%), Postives = 249/296 (84.12%), Query Frame = 0
Query:    4 EMPLRMNDQCAADEVMSLQKEEG---NGTLTENR--AKRKACGGNDINFIEVSDAGGKACLSVTTVKIRSKEGVAIELEVALGNGGSEGRIEANTTGHEVVVVDEQNDVLMEESCKGEENLRERNSKQGEPKVHRTSNMVKEACEEVKSVAYKRLWECQTEAFSNIIALEEMLKQCREKDQQKKAVSEIDDVSRLPLSRESCEELRKLAQKIESQLSEIIGSYAEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQINQRAKKRRVRRLQGIGVLRKSPRLQKLI 294
            E+ LR+NDQCAADEVMSLQ ++      +LTE+R   KRKACGGN IN I VS  G  ACLSVTTVK RS EGVA+E EVAL   GSEG         E+VV+DEQNDVLMEESCKGEE+LRE NSKQGEPK+HRTSNM+KEAC EVKSVAYKRLWECQTEA SNIIALE+MLKQCREK QQKKAVSEIDDVSRLPLS+ESCEELR LAQKIESQLS IIGSY EAVVPCYESRGCET+ ISKEVFHETP KTSK HEQKERE  SQIN RAKKRRVRRLQ IGVLRKSPRLQKLI
Sbjct:  135 EVALRVNDQCAADEVMSLQNDKRIVEERSLTESRDSPKRKACGGNYINVIGVSGTGANACLSVTTVKTRSIEGVAVESEVALEKSGSEGG-----ELRELVVLDEQNDVLMEESCKGEESLRETNSKQGEPKLHRTSNMMKEACVEVKSVAYKRLWECQTEACSNIIALEKMLKQCREKGQQKKAVSEIDDVSRLPLSKESCEELRNLAQKIESQLSGIIGSYDEAVVPCYESRGCETKSISKEVFHETPTKTSKHHEQKERE-QSQINPRAKKRRVRRLQDIGVLRKSPRLQKLI 424          
BLAST of BolC9t59569H-R vs. GenBank_protein
Match: XP_033137471.1 (uncharacterized protein LOC103847192 isoform X2 [Brassica rapa])

HSP 1 Score: 374 bits (960), Expect = 1.820e-125
Identity = 225/296 (76.01%), Postives = 239/296 (80.74%), Query Frame = 0
Query:    4 EMPLRMNDQCAADEVMSLQKEEG---NGTLTENR--AKRKACGGNDINFIEVSDAGGKACLSVTTVKIRSKEGVAIELEVALGNGGSEGRIEANTTGHEVVVVDEQNDVLMEESCKGEENLRERNSKQGEPKVHRTSNMVKEACEEVKSVAYKRLWECQTEAFSNIIALEEMLKQCREKDQQKKAVSEIDDVSRLPLSRESCEELRKLAQKIESQLSEIIGSYAEAVVPCYESRGCETEGISKEVFHETPMKTSKQHEQKEREIDSQINQRAKKRRVRRLQGIGVLRKSPRLQKLI 294
            E+ LR+NDQCAADEVMSLQ ++      +LTE+R   KRKACGGN IN I VS  G  ACLSVTTVK RS EGVA+E EVAL   GSEG         E+VV+DEQNDVLMEESCKGEE+LRER           TSNM+KEAC EVKSVAYKRLWECQTEA SNIIALE+MLKQCREK QQKKAVSEIDDVSRLPLS+ESCEELR LAQKIESQLS IIGSY EAVVPCYESRGCET+ ISKEVFHETP KTSK HEQKERE  SQIN RAKKRRVRRLQ IGVLRKSPRLQKLI
Sbjct:  135 EVALRVNDQCAADEVMSLQNDKRIVEERSLTESRDSPKRKACGGNYINVIGVSGTGANACLSVTTVKTRSIEGVAVESEVALEKSGSEGG-----ELRELVVLDEQNDVLMEESCKGEESLRER-----------TSNMMKEACVEVKSVAYKRLWECQTEACSNIIALEKMLKQCREKGQQKKAVSEIDDVSRLPLSKESCEELRNLAQKIESQLSGIIGSYDEAVVPCYESRGCETKSISKEVFHETPTKTSKHHEQKERE-QSQINPRAKKRRVRRLQDIGVLRKSPRLQKLI 413          
The following BLAST results are available for this feature:
BLAST of BolC9t59569H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
VDD34246.12.430e-196100.00unnamed protein product [Brassica oleracea][more]
XP_013608494.13.160e-18693.20PREDICTED: LOW QUALITY PROTEIN: uncharacterized pr... [more]
KAF3501271.19.530e-18497.90hypothetical protein F2Q69_00045188 [Brassica cret... [more]
XP_022569886.11.470e-15083.84uncharacterized protein LOC111212605 [Brassica nap... [more]
XP_022549476.12.250e-14481.94uncharacterized protein LOC106419272 [Brassica nap... [more]
KAG5377138.11.540e-14181.06hypothetical protein IGI04_041734 [Brassica rapa s... [more]
VDD20367.14.410e-14180.73unnamed protein product [Brassica rapa][more]
CDY21566.11.530e-13883.03BnaC09g47260D [Brassica napus][more]
XP_009122499.11.280e-13579.05uncharacterized protein LOC103847192 isoform X1 [B... [more]
XP_033137471.11.820e-12576.01uncharacterized protein LOC103847192 isoform X2 [B... [more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030261 chromosome condensation
biological_process GO:0031936 negative regulation of chromatin silencing
biological_process GO:0045910 negative regulation of DNA recombination
biological_process GO:0006334 nucleosome assembly
biological_process GO:0016584 nucleosome positioning
cellular_component GO:0005730 nucleolus
cellular_component GO:0000786 nucleosome
molecular_function GO:0003690 double-stranded DNA binding
molecular_function GO:0031492 nucleosomal DNA binding
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 247..269

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C9contigC9:59860560..59861687 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Blast2go on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC9t59569H-RBolC9t59569H-RBrassica oleracea HDEMmRNAC9 59860560..59861687 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolC9t59569H-R-P ID=BolC9t59569H-R-P|Name=BolC9t59569H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=295bp
MLREMPLRMNDQCAADEVMSLQKEEGNGTLTENRAKRKACGGNDINFIEV
SDAGGKACLSVTTVKIRSKEGVAIELEVALGNGGSEGRIEANTTGHEVVV
VDEQNDVLMEESCKGEENLRERNSKQGEPKVHRTSNMVKEACEEVKSVAY
KRLWECQTEAFSNIIALEEMLKQCREKDQQKKAVSEIDDVSRLPLSRESC
EELRKLAQKIESQLSEIIGSYAEAVVPCYESRGCETEGISKEVFHETPMK
TSKQHEQKEREIDSQINQRAKKRRVRRLQGIGVLRKSPRLQKLI.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
TermDefinition
GO:0045910negative regulation of DNA recombination
GO:0031936negative regulation of chromatin silencing
GO:0030261chromosome condensation
GO:0016584nucleosome positioning
GO:0006334nucleosome assembly
Vocabulary: Molecular Function
TermDefinition
GO:0031492nucleosomal DNA binding
GO:0003690double-stranded DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005730nucleolus
GO:0000786nucleosome