BolC9t59461H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolC9t59461H-R
Unique NameBolC9t59461H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length252
Homology
BLAST of BolC9t59461H-R vs. GenBank_protein
Match: CAF1787908.1 (unnamed protein product [Brassica napus] >VDD34138.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 486 bits (1251), Expect = 6.180e-173
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 0
Query:    1 MRNKSKHPKKSHHSRKKPEKKEKTDMETIKYPCVMTEAWEKLEKERLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAKFHFTEALLFHFSHLRLSFFFLHALGLTDYYLNEMFILCLV 251
            MRNKSKHPKKSHHSRKKPEKKEKTDMETIKYPCVMTEAWEKLEKERLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAKFHFTEALLFHFSHLRLSFFFLHALGLTDYYLNEMFILCLV
Sbjct:    1 MRNKSKHPKKSHHSRKKPEKKEKTDMETIKYPCVMTEAWEKLEKERLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAKFHFTEALLFHFSHLRLSFFFLHALGLTDYYLNEMFILCLV 251          
BLAST of BolC9t59461H-R vs. GenBank_protein
Match: CAF2352961.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 453 bits (1165), Expect = 6.390e-160
Identity = 237/251 (94.42%), Postives = 241/251 (96.02%), Query Frame = 0
Query:    1 MRNKSKHPKKSHHSRKKPEKKEKTDMETIKYPCVMTEAWEKLEKERLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAKFHFTEALLFHFSHLRLSFFFLHALGLTDYYLNEMFILCLV 251
            MRNKSKHPKKSHHSRKKP K++KTDMETIKYPCVMTEAWEKLEKE LMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSP+TIFFAVMLLKCLFFDDGYPDPTTTPVLKN+RFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCF NGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAKFHFTEALLF      LSFFFLHALGLTDY LNEMFILCLV
Sbjct:    1 MRNKSKHPKKSHHSRKKPTKEKKTDMETIKYPCVMTEAWEKLEKESLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPITIFFAVMLLKCLFFDDGYPDPTTTPVLKNIRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFINGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAKFHFTEALLF------LSFFFLHALGLTDYCLNEMFILCLV 245          
BLAST of BolC9t59461H-R vs. GenBank_protein
Match: CAF1787943.1 (unnamed protein product [Brassica napus] >CAF1787967.1 unnamed protein product [Brassica napus])

HSP 1 Score: 412 bits (1059), Expect = 2.870e-144
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0
Query:    1 MRNKSKHPKKSHHSRKKPEKKEKTDMETIKYPCVMTEAWEKLEKERLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAK 211
            MRNKSKHPKKSHHSRKKPEKKEKTDMETIKYPCVMTEAWEKLEKERLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAK
Sbjct:    1 MRNKSKHPKKSHHSRKKPEKKEKTDMETIKYPCVMTEAWEKLEKERLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAK 211          
BLAST of BolC9t59461H-R vs. GenBank_protein
Match: KAF3562950.1 (hypothetical protein DY000_02019335 [Brassica cretica])

HSP 1 Score: 411 bits (1057), Expect = 5.800e-144
Identity = 210/211 (99.53%), Postives = 211/211 (100.00%), Query Frame = 0
Query:    1 MRNKSKHPKKSHHSRKKPEKKEKTDMETIKYPCVMTEAWEKLEKERLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAK 211
            MRNKSKHPKKSHHSRKKPEKKEKTDMETIKYPCVMTEAWEKLEKERLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKN+RFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAK
Sbjct:    1 MRNKSKHPKKSHHSRKKPEKKEKTDMETIKYPCVMTEAWEKLEKERLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNIRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAK 211          
BLAST of BolC9t59461H-R vs. GenBank_protein
Match: VDD34143.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 404 bits (1039), Expect = 3.330e-141
Identity = 208/212 (98.11%), Postives = 210/212 (99.06%), Query Frame = 0
Query:    1 MRNKSKHPKKSHHSRKKPEKKEKTDMETIKYPCVMTEAWEKLEKERLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAG-VYTIGFFQYIVYVYNFEFLAK 211
            MRNKSKHPKKSHHSRKKPEKKEKTDMETIKYPCVMTEAWEKLEKERLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAG +Y +GFFQYIVYVYNFEFLAK
Sbjct:    1 MRNKSKHPKKSHHSRKKPEKKEKTDMETIKYPCVMTEAWEKLEKERLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGHIYRVGFFQYIVYVYNFEFLAK 212          
BLAST of BolC9t59461H-R vs. GenBank_protein
Match: KAF3502412.1 (hypothetical protein F2Q69_00045090 [Brassica cretica])

HSP 1 Score: 393 bits (1010), Expect = 8.420e-137
Identity = 200/211 (94.79%), Postives = 205/211 (97.16%), Query Frame = 0
Query:    1 MRNKSKHPKKSHHSRKKPEKKEKTDMETIKYPCVMTEAWEKLEKERLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAK 211
            M N+SKHPKKSHH RKKP + +KTDMETIKYPCVMTEAWEKLEKE LMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVT FFAVMLLKCLFFDDGYPDPTTTPVLKN+RFVTSLI+LPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAK
Sbjct:    1 MGNRSKHPKKSHHPRKKPTETKKTDMETIKYPCVMTEAWEKLEKESLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTTFFAVMLLKCLFFDDGYPDPTTTPVLKNIRFVTSLIILPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAK 211          
BLAST of BolC9t59461H-R vs. GenBank_protein
Match: VDD20193.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 395 bits (1014), Expect = 4.900e-126
Identity = 201/211 (95.26%), Postives = 206/211 (97.63%), Query Frame = 0
Query:    1 MRNKSKHPKKSHHSRKKPEKKEKTDMETIKYPCVMTEAWEKLEKERLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAK 211
            MRNKSKHPKKSHHSRKKP +K+KTDMETIK+PCVMTEAWEKLEKE LMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKN+RFVTSLI+LPIMFYVPFNYPTVDVFVS FSFLAGGVSIYHLTSTIDIGHGLLILFLCF NGLLAIDFAGQSFHPGAGVYTIGFF YIVYVYNFEFLAK
Sbjct:    1 MRNKSKHPKKSHHSRKKPTEKKKTDMETIKHPCVMTEAWEKLEKESLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNIRFVTSLIILPIMFYVPFNYPTVDVFVSTFSFLAGGVSIYHLTSTIDIGHGLLILFLCFINGLLAIDFAGQSFHPGAGVYTIGFFPYIVYVYNFEFLAK 211          
BLAST of BolC9t59461H-R vs. GenBank_protein
Match: KAF8115800.1 (hypothetical protein N665_0025s0248 [Sinapis alba])

HSP 1 Score: 345 bits (886), Expect = 6.480e-118
Identity = 175/211 (82.94%), Postives = 193/211 (91.47%), Query Frame = 0
Query:    1 MRNKSKHPKKSHHSRKKPEKKEKTDMETIKYPCVMTEAWEKLEKERLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAK 211
            M N+SKHPKKSHHSRKKP KK+KTDMETIKY CVMTEAWE LEK+RLMG+RVFTRGIWYAL IFSI  L+FLSGGRVVLFSPVTIF+AVMLLKCLFFDDGYPD TTTP LK+LR+V SLI+L I+FY+PFNYPT+DVFVS FSFLAGGVSIYHL+ST+DIGHGLL L   FTNGLLAIDFAGQ+ HPG+GVYTIGFFQYI+YVYNF+FLA 
Sbjct:    1 MGNRSKHPKKSHHSRKKPTKKKKTDMETIKYFCVMTEAWENLEKQRLMGFRVFTRGIWYALVIFSIFCLIFLSGGRVVLFSPVTIFYAVMLLKCLFFDDGYPDTTTTPALKDLRWVISLIILLIIFYIPFNYPTMDVFVSTFSFLAGGVSIYHLSSTMDIGHGLLTLMCAFTNGLLAIDFAGQNIHPGSGVYTIGFFQYILYVYNFDFLAN 211          
BLAST of BolC9t59461H-R vs. GenBank_protein
Match: KAG2274211.1 (hypothetical protein Bca52824_056766 [Brassica carinata])

HSP 1 Score: 325 bits (832), Expect = 2.080e-110
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0
Query:   48 MGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAK 211
            MGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAK
Sbjct:    1 MGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAK 164          
BLAST of BolC9t59461H-R vs. GenBank_protein
Match: KAF3565550.1 (hypothetical protein DY000_02013275 [Brassica cretica])

HSP 1 Score: 275 bits (703), Expect = 1.860e-87
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 0
Query:   74 GGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAK 211
            GGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKN+RFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAK
Sbjct:  106 GGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNIRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAK 243          
The following BLAST results are available for this feature:
BLAST of BolC9t59461H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
CAF1787908.16.180e-173100.00unnamed protein product [Brassica napus] >VDD34138... [more]
CAF2352961.16.390e-16094.42unnamed protein product [Brassica napus][more]
CAF1787943.12.870e-144100.00unnamed protein product [Brassica napus] >CAF17879... [more]
KAF3562950.15.800e-14499.53hypothetical protein DY000_02019335 [Brassica cret... [more]
VDD34143.13.330e-14198.11unnamed protein product [Brassica oleracea][more]
KAF3502412.18.420e-13794.79hypothetical protein F2Q69_00045090 [Brassica cret... [more]
VDD20193.14.900e-12695.26unnamed protein product [Brassica rapa][more]
KAF8115800.16.480e-11882.94hypothetical protein N665_0025s0248 [Sinapis alba][more]
KAG2274211.12.080e-110100.00hypothetical protein Bca52824_056766 [Brassica car... [more]
KAF3565550.11.860e-8799.28hypothetical protein DY000_02013275 [Brassica cret... [more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 73..77
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 207..217
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 109..128
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 129..133
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 189..206
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 78..97
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 52..72
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 184..188
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..51
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 153..163
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 218..236
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 164..183
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 237..251
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 134..152
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 98..108
NoneNo IPR availableTMHMMTMhelixcoord: 110..132
NoneNo IPR availableTMHMMTMhelixcoord: 188..210
NoneNo IPR availableTMHMMTMhelixcoord: 52..74
NoneNo IPR availableTMHMMTMhelixcoord: 161..178
NoneNo IPR availableTMHMMTMhelixcoord: 137..154
NoneNo IPR availableTMHMMTMhelixcoord: 78..97
NoneNo IPR availableTMHMMTMhelixcoord: 217..236

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C9contigC9:59200913..59209240 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Blast2go on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC9t59461H-RBolC9t59461H-RBrassica oleracea HDEMmRNAC9 59200913..59209240 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolC9t59461H-R-P ID=BolC9t59461H-R-P|Name=BolC9t59461H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=252bp
MRNKSKHPKKSHHSRKKPEKKEKTDMETIKYPCVMTEAWEKLEKERLMGY
RVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDG
YPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVS
IYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYI
VYVYNFEFLAKFHFTEALLFHFSHLRLSFFFLHALGLTDYYLNEMFILCL
V.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane