BolC9t59461H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	BolC9t59461H-R
Unique Name	BolC9t59461H-R-P
Type	polypeptide
Organism	Brassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length	252

Homology

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BLAST of BolC9t59461H-R vs. GenBank_protein
Match: CAF1787908.1 (unnamed protein product [Brassica napus] >VDD34138.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 486 bits (1251), Expect = 6.180e-173
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 0

Query:    1 MRNKSKHPKKSHHSRKKPEKKEKTDMETIKYPCVMTEAWEKLEKERLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAKFHFTEALLFHFSHLRLSFFFLHALGLTDYYLNEMFILCLV 251
            MRNKSKHPKKSHHSRKKPEKKEKTDMETIKYPCVMTEAWEKLEKERLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAKFHFTEALLFHFSHLRLSFFFLHALGLTDYYLNEMFILCLV
Sbjct:    1 MRNKSKHPKKSHHSRKKPEKKEKTDMETIKYPCVMTEAWEKLEKERLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAKFHFTEALLFHFSHLRLSFFFLHALGLTDYYLNEMFILCLV 251

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BLAST of BolC9t59461H-R vs. GenBank_protein
Match: CAF2352961.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 453 bits (1165), Expect = 6.390e-160
Identity = 237/251 (94.42%), Postives = 241/251 (96.02%), Query Frame = 0

Query:    1 MRNKSKHPKKSHHSRKKPEKKEKTDMETIKYPCVMTEAWEKLEKERLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAKFHFTEALLFHFSHLRLSFFFLHALGLTDYYLNEMFILCLV 251
            MRNKSKHPKKSHHSRKKP K++KTDMETIKYPCVMTEAWEKLEKE LMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSP+TIFFAVMLLKCLFFDDGYPDPTTTPVLKN+RFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCF NGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAKFHFTEALLF      LSFFFLHALGLTDY LNEMFILCLV
Sbjct:    1 MRNKSKHPKKSHHSRKKPTKEKKTDMETIKYPCVMTEAWEKLEKESLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPITIFFAVMLLKCLFFDDGYPDPTTTPVLKNIRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFINGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAKFHFTEALLF------LSFFFLHALGLTDYCLNEMFILCLV 245

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BLAST of BolC9t59461H-R vs. GenBank_protein
Match: CAF1787943.1 (unnamed protein product [Brassica napus] >CAF1787967.1 unnamed protein product [Brassica napus])

HSP 1 Score: 412 bits (1059), Expect = 2.870e-144
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0

Query:    1 MRNKSKHPKKSHHSRKKPEKKEKTDMETIKYPCVMTEAWEKLEKERLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAK 211
            MRNKSKHPKKSHHSRKKPEKKEKTDMETIKYPCVMTEAWEKLEKERLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAK
Sbjct:    1 MRNKSKHPKKSHHSRKKPEKKEKTDMETIKYPCVMTEAWEKLEKERLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAK 211

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BLAST of BolC9t59461H-R vs. GenBank_protein
Match: KAF3562950.1 (hypothetical protein DY000_02019335 [Brassica cretica])

HSP 1 Score: 411 bits (1057), Expect = 5.800e-144
Identity = 210/211 (99.53%), Postives = 211/211 (100.00%), Query Frame = 0

Query:    1 MRNKSKHPKKSHHSRKKPEKKEKTDMETIKYPCVMTEAWEKLEKERLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAK 211
            MRNKSKHPKKSHHSRKKPEKKEKTDMETIKYPCVMTEAWEKLEKERLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKN+RFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAK
Sbjct:    1 MRNKSKHPKKSHHSRKKPEKKEKTDMETIKYPCVMTEAWEKLEKERLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNIRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAK 211

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BLAST of BolC9t59461H-R vs. GenBank_protein
Match: VDD34143.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 404 bits (1039), Expect = 3.330e-141
Identity = 208/212 (98.11%), Postives = 210/212 (99.06%), Query Frame = 0

Query:    1 MRNKSKHPKKSHHSRKKPEKKEKTDMETIKYPCVMTEAWEKLEKERLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAG-VYTIGFFQYIVYVYNFEFLAK 211
            MRNKSKHPKKSHHSRKKPEKKEKTDMETIKYPCVMTEAWEKLEKERLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAG +Y +GFFQYIVYVYNFEFLAK
Sbjct:    1 MRNKSKHPKKSHHSRKKPEKKEKTDMETIKYPCVMTEAWEKLEKERLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGHIYRVGFFQYIVYVYNFEFLAK 212

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BLAST of BolC9t59461H-R vs. GenBank_protein
Match: KAF3502412.1 (hypothetical protein F2Q69_00045090 [Brassica cretica])

HSP 1 Score: 393 bits (1010), Expect = 8.420e-137
Identity = 200/211 (94.79%), Postives = 205/211 (97.16%), Query Frame = 0

Query:    1 MRNKSKHPKKSHHSRKKPEKKEKTDMETIKYPCVMTEAWEKLEKERLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAK 211
            M N+SKHPKKSHH RKKP + +KTDMETIKYPCVMTEAWEKLEKE LMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVT FFAVMLLKCLFFDDGYPDPTTTPVLKN+RFVTSLI+LPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAK
Sbjct:    1 MGNRSKHPKKSHHPRKKPTETKKTDMETIKYPCVMTEAWEKLEKESLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTTFFAVMLLKCLFFDDGYPDPTTTPVLKNIRFVTSLIILPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAK 211

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BLAST of BolC9t59461H-R vs. GenBank_protein
Match: VDD20193.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 395 bits (1014), Expect = 4.900e-126
Identity = 201/211 (95.26%), Postives = 206/211 (97.63%), Query Frame = 0

Query:    1 MRNKSKHPKKSHHSRKKPEKKEKTDMETIKYPCVMTEAWEKLEKERLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAK 211
            MRNKSKHPKKSHHSRKKP +K+KTDMETIK+PCVMTEAWEKLEKE LMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKN+RFVTSLI+LPIMFYVPFNYPTVDVFVS FSFLAGGVSIYHLTSTIDIGHGLLILFLCF NGLLAIDFAGQSFHPGAGVYTIGFF YIVYVYNFEFLAK
Sbjct:    1 MRNKSKHPKKSHHSRKKPTEKKKTDMETIKHPCVMTEAWEKLEKESLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNIRFVTSLIILPIMFYVPFNYPTVDVFVSTFSFLAGGVSIYHLTSTIDIGHGLLILFLCFINGLLAIDFAGQSFHPGAGVYTIGFFPYIVYVYNFEFLAK 211

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BLAST of BolC9t59461H-R vs. GenBank_protein
Match: KAF8115800.1 (hypothetical protein N665_0025s0248 [Sinapis alba])

HSP 1 Score: 345 bits (886), Expect = 6.480e-118
Identity = 175/211 (82.94%), Postives = 193/211 (91.47%), Query Frame = 0

Query:    1 MRNKSKHPKKSHHSRKKPEKKEKTDMETIKYPCVMTEAWEKLEKERLMGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAK 211
            M N+SKHPKKSHHSRKKP KK+KTDMETIKY CVMTEAWE LEK+RLMG+RVFTRGIWYAL IFSI  L+FLSGGRVVLFSPVTIF+AVMLLKCLFFDDGYPD TTTP LK+LR+V SLI+L I+FY+PFNYPT+DVFVS FSFLAGGVSIYHL+ST+DIGHGLL L   FTNGLLAIDFAGQ+ HPG+GVYTIGFFQYI+YVYNF+FLA 
Sbjct:    1 MGNRSKHPKKSHHSRKKPTKKKKTDMETIKYFCVMTEAWENLEKQRLMGFRVFTRGIWYALVIFSIFCLIFLSGGRVVLFSPVTIFYAVMLLKCLFFDDGYPDTTTTPALKDLRWVISLIILLIIFYIPFNYPTMDVFVSTFSFLAGGVSIYHLSSTMDIGHGLLTLMCAFTNGLLAIDFAGQNIHPGSGVYTIGFFQYILYVYNFDFLAN 211

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BLAST of BolC9t59461H-R vs. GenBank_protein
Match: KAG2274211.1 (hypothetical protein Bca52824_056766 [Brassica carinata])

HSP 1 Score: 325 bits (832), Expect = 2.080e-110
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0

Query:   48 MGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAK 211
            MGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAK
Sbjct:    1 MGYRVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAK 164

[Close]

BLAST of BolC9t59461H-R vs. GenBank_protein
Match: KAF3565550.1 (hypothetical protein DY000_02013275 [Brassica cretica])

HSP 1 Score: 275 bits (703), Expect = 1.860e-87
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 0

Query:   74 GGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAK 211
            GGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKN+RFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAK
Sbjct:  106 GGRVVLFSPVTIFFAVMLLKCLFFDDGYPDPTTTPVLKNIRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVSIYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYIVYVYNFEFLAK 243

The following BLAST results are available for this feature:

BLAST of BolC9t59461H-R vs. GenBank_protein

BLAST of BolC9t59461H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20


Match Name	E-value	Identity	Description
CAF1787908.1	6.180e-173	100.00	unnamed protein product [Brassica napus] >VDD34138...	[more]
CAF2352961.1	6.390e-160	94.42	unnamed protein product [Brassica napus]	[more]
CAF1787943.1	2.870e-144	100.00	unnamed protein product [Brassica napus] >CAF17879...	[more]
KAF3562950.1	5.800e-144	99.53	hypothetical protein DY000_02019335 [Brassica cret...	[more]
VDD34143.1	3.330e-141	98.11	unnamed protein product [Brassica oleracea]	[more]
KAF3502412.1	8.420e-137	94.79	hypothetical protein F2Q69_00045090 [Brassica cret...	[more]
VDD20193.1	4.900e-126	95.26	unnamed protein product [Brassica rapa]	[more]
KAF8115800.1	6.480e-118	82.94	hypothetical protein N665_0025s0248 [Sinapis alba]	[more]
KAG2274211.1	2.080e-110	100.00	hypothetical protein Bca52824_056766 [Brassica car...	[more]
KAF3565550.1	1.860e-87	99.28	hypothetical protein DY000_02013275 [Brassica cret...	[more]

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GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 73..77
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 207..217
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 109..128
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 129..133
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 189..206
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 78..97
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 52..72
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 184..188
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..51
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 153..163
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 218..236
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 164..183
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 237..251
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 134..152
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 98..108
None	No IPR available	TMHMM	TMhelix		coord: 110..132
None	No IPR available	TMHMM	TMhelix		coord: 188..210
None	No IPR available	TMHMM	TMhelix		coord: 52..74
None	No IPR available	TMHMM	TMhelix		coord: 161..178
None	No IPR available	TMHMM	TMhelix		coord: 137..154
None	No IPR available	TMHMM	TMhelix		coord: 78..97
None	No IPR available	TMHMM	TMhelix		coord: 217..236

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C9	contig	C9:59200913..59209240 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
Interproscan on OGS1.0	2022-03-19
Blast2go on OGS1.0	2022-03-19
Diamond on OGS1.0 vs NR	2022-03-19
Brassica oleracea HDEM OGS1.0	2018-11-02

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
BolC9t59461H-R	BolC9t59461H-R	Brassica oleracea HDEM	mRNA	C9 59200913..59209240 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>BolC9t59461H-R-P ID=BolC9t59461H-R-P|Name=BolC9t59461H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=252bp
MRNKSKHPKKSHHSRKKPEKKEKTDMETIKYPCVMTEAWEKLEKERLMGY
RVFTRGIWYALTIFSILGLLFLSGGRVVLFSPVTIFFAVMLLKCLFFDDG
YPDPTTTPVLKNLRFVTSLIVLPIMFYVPFNYPTVDVFVSIFSFLAGGVS
IYHLTSTIDIGHGLLILFLCFTNGLLAIDFAGQSFHPGAGVYTIGFFQYI
VYVYNFEFLAKFHFTEALLFHFSHLRLSFFFLHALGLTDYYLNEMFILCL
V.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Orthology

View orthology data for BolC9t59461H-R-P