Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BnaA01G0030400WE | BnaA01G0030400WE | Brassica napus Westar | gene | westarv0_A01 1952747..1955056 - |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BnaA01T0030400WE.exon1 | BnaA01T0030400WE.exon1 | Brassica napus Westar | exon | westarv0_A01 1952747..1955056 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| cds.BnaA01T0030400WE | cds.BnaA01T0030400WE | Brassica napus Westar | CDS | westarv0_A01 1952747..1955056 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >BnaA01T0030400WE ID=BnaA01T0030400WE|Name=BnaA01T0030400WE|organism=Brassica napus Westar|type=mRNA|length=2310bp|location=Sequence derived from alignment at westarv0_A01:1952747..1955056- (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.
ATGCATAGTGGAAGCAATCGTTACTTAGCGAATCTCTTACGTCTTTGCAA
AGATCAAAAGTGCAAACTTTCCGGGAAAGTCATTCATGGGTCCATCCTTC
GGACTGGATTTTCCATCGACACTTATCTCTGCAATCGCTTACTAGATTTA
TACTGCGAGTGTGGTGATAAAGGTTATGCACGCAAGGTGTTCTACGAAAT
GCCTGTGAGAGATGTTTACTCGTCGAATGCTTTCTTGACGTTTTGTTGTA
AAGTTGGGAACTTGGGTGAAGCCACTAAGGTGTTTGATGCAATGCCTGAG
AGAGATGTAGTGTCGTGGAACAACATGATTAGTGTATTGGTTCGTAAAGG
TTTAGAGGAGGAAGCGTTGGTTGTTTATGAGAGGATGGTTTCTCAAGGTT
TTTTGCCTTCTCGGTTCACGCTAGCTAGCGTTTTGAGCGCTTGTAGCAAG
CTTTTGGATGGTGTTACCGGTATGAGATGTCACGGGGTTGCTGTTAAGAT
TGGTCTTGATGGTAACATTTTTGTTGGCAATGCGTTGTTGTCTATGTATG
CTAAGTGCGGGCTTATGGTTGAACATGGTGTTAGGGTCTTTGAATGTTTC
CCTGAGCCTAATGAGGTCTCTTTTACCGCTGTGATCAACGGGTTAGCTCG
GGAGAATAGAGTTTTGGAGGCAGTTCACATGTTTAGATCGATGTGCGAGA
AAGGTGTCAAGGTGGATCCTGTTTGCTTGTCTAATATTCTCAGAATCTCT
GCTCCAAGAGAAGAATGTGAGAGCTTGAATGAAATCAATCGCAATGTGCT
GGGTAAACAGATCCATAGTCTCATGTTGAGACTTGGGTTACAAGGAGATC
TTCATCTGAGCAATTCTCTGCTCGAAACTTATGCAAAGAATGGAGATATG
AATGGTGCAGAGTTGATTTTTACTGAGATGCCTGAAGTAAATATTGTCTC
TTGGAACATTATGATAGCTGGGTTTGGTCAGGACTATCAAAGTCACAAAT
CAATTGAGTATTTAAAGAGAATGAGAGAGTCTGGTTTTGAACCGAACGAA
GTTACATGCACTTCTGTTCTTGGAGCGTGTTTTCGTTCAGGGGATGTTGA
AACCGGTAGGAGTATATTCAGTAGCATGCTTAACCCTAGTGTTACCGCTT
GGAATGCTTTGCTCTCTGGCTACTCCAAGTTTGAACACTATGAGGAAGCA
ATCAACCAGTTCAGAGAAATGCACCTTCAGCATCTGAACCCAGATAGAAC
AACTTTGAGTGTGATACTAAGCTCATGCGCGAGATTGAGGTTTCTGGAAG
GAGGGAAACAGATCCACGGTGTAGCGATAAGGAACAATATCTCTAGGAAC
AGTCACATAGTTAGTGGTCTTATTGCAGTGTACTCTGAATGTGAGAAGAT
AGAGATCTCTGAACATATCTTTGATGATTGTACAACAGAACTAGATATAG
CTTGTTGGAACTCCATGATGGCAGGTCTCAGTCGCAACTCGCTTGACACA
AAAGCTTTAATGCTATTCAGAAGATTGCTTCGGACTGGTGTGTTGTTTCC
TAATGAAACTTCATACGCTACTTTATTAGGCAGCTGTTCGAGGTTATGTA
GTTTGCTCCATGGAAGACAGTTTCATGGACATGTAGTGAAGAGCGGATAT
GCAAGTGATCCCTTTGTTGAAACCGCTCTTACGGATATGTACAGTAAGTG
CGGTGAAATAGACTCGGCTCGAGAGTTGTTTGATACCGTGTTGGTTAAAA
GCATAGTTCTTTGGAACGAGATGATACACGGGTATGCTCATAACGGACGA
GGTGATGAAGCTGTTGGTCTCTACAGAGAGATGATATCATGGGGAGAGAA
GCCCGACCGGATAACTTTTGTCTCTGTGTTGACTGCTTGTAGCCACTCAG
GACTGGTGGACACCGGGCTGGAGATACTCAGTTCCATGCAGAGAGATCAT
GGTATTGAGCCGGAGCTGGATCATTATATATGCATAGTTGATTGTCTTGG
AAGAGCTGGCCGGCTTGAAGACGCAGAGGCGCTTGCAGAAGCTACACCAT
ACAAAAACAGCTCTGTTCTATGGGAGATTCTGCTTAGTTCATGTAGAGTC
CATGGTGATGTGAGCTTGGCTAGACGAATCGCAGGGAAACTCGTAGCTCT
GGATCCTCGGAACTCAGCAACTTATGTGCTGCTAAGCAACATATATACTT
CTGTGAGACGGTGGGATGAAGCTGCAGCTCTTCAAGGGTTGATGAACAAG
AACAGAGTGTATAAGACTCCAGGTCACAGCTGGATCATAGAGAACAATAA
TAGCTTGTAA back to topprotein sequence of BnaA01T0030400WE >BnaA01T0030400WE-P ID=BnaA01T0030400WE-P|Name=BnaA01T0030400WE|organism=Brassica napus Westar|type=polypeptide|length=770bp
MHSGSNRYLANLLRLCKDQKCKLSGKVIHGSILRTGFSIDTYLCNRLLDL
YCECGDKGYARKVFYEMPVRDVYSSNAFLTFCCKVGNLGEATKVFDAMPE
RDVVSWNNMISVLVRKGLEEEALVVYERMVSQGFLPSRFTLASVLSACSK
LLDGVTGMRCHGVAVKIGLDGNIFVGNALLSMYAKCGLMVEHGVRVFECF
PEPNEVSFTAVINGLARENRVLEAVHMFRSMCEKGVKVDPVCLSNILRIS
APREECESLNEINRNVLGKQIHSLMLRLGLQGDLHLSNSLLETYAKNGDM
NGAELIFTEMPEVNIVSWNIMIAGFGQDYQSHKSIEYLKRMRESGFEPNE
VTCTSVLGACFRSGDVETGRSIFSSMLNPSVTAWNALLSGYSKFEHYEEA
INQFREMHLQHLNPDRTTLSVILSSCARLRFLEGGKQIHGVAIRNNISRN
SHIVSGLIAVYSECEKIEISEHIFDDCTTELDIACWNSMMAGLSRNSLDT
KALMLFRRLLRTGVLFPNETSYATLLGSCSRLCSLLHGRQFHGHVVKSGY
ASDPFVETALTDMYSKCGEIDSARELFDTVLVKSIVLWNEMIHGYAHNGR
GDEAVGLYREMISWGEKPDRITFVSVLTACSHSGLVDTGLEILSSMQRDH
GIEPELDHYICIVDCLGRAGRLEDAEALAEATPYKNSSVLWEILLSSCRV
HGDVSLARRIAGKLVALDPRNSATYVLLSNIYTSVRRWDEAAALQGLMNK
NRVYKTPGHSWIIENNNSL. back to topmRNA from alignment at westarv0_A01:1952747..1955056- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >BnaA01T0030400WE ID=BnaA01T0030400WE|Name=BnaA01T0030400WE|organism=Brassica napus Westar|type=mRNA|length=2310bp|location=Sequence derived from alignment at westarv0_A01:1952747..1955056- (Brassica napus Westar)
ATGCATAGTGGAAGCAATCGTTACTTAGCGAATCTCTTACGTCTTTGCAA
AGATCAAAAGTGCAAACTTTCCGGGAAAGTCATTCATGGGTCCATCCTTC
GGACTGGATTTTCCATCGACACTTATCTCTGCAATCGCTTACTAGATTTA
TACTGCGAGTGTGGTGATAAAGGTTATGCACGCAAGGTGTTCTACGAAAT
GCCTGTGAGAGATGTTTACTCGTCGAATGCTTTCTTGACGTTTTGTTGTA
AAGTTGGGAACTTGGGTGAAGCCACTAAGGTGTTTGATGCAATGCCTGAG
AGAGATGTAGTGTCGTGGAACAACATGATTAGTGTATTGGTTCGTAAAGG
TTTAGAGGAGGAAGCGTTGGTTGTTTATGAGAGGATGGTTTCTCAAGGTT
TTTTGCCTTCTCGGTTCACGCTAGCTAGCGTTTTGAGCGCTTGTAGCAAG
CTTTTGGATGGTGTTACCGGTATGAGATGTCACGGGGTTGCTGTTAAGAT
TGGTCTTGATGGTAACATTTTTGTTGGCAATGCGTTGTTGTCTATGTATG
CTAAGTGCGGGCTTATGGTTGAACATGGTGTTAGGGTCTTTGAATGTTTC
CCTGAGCCTAATGAGGTCTCTTTTACCGCTGTGATCAACGGGTTAGCTCG
GGAGAATAGAGTTTTGGAGGCAGTTCACATGTTTAGATCGATGTGCGAGA
AAGGTGTCAAGGTGGATCCTGTTTGCTTGTCTAATATTCTCAGAATCTCT
GCTCCAAGAGAAGAATGTGAGAGCTTGAATGAAATCAATCGCAATGTGCT
GGGTAAACAGATCCATAGTCTCATGTTGAGACTTGGGTTACAAGGAGATC
TTCATCTGAGCAATTCTCTGCTCGAAACTTATGCAAAGAATGGAGATATG
AATGGTGCAGAGTTGATTTTTACTGAGATGCCTGAAGTAAATATTGTCTC
TTGGAACATTATGATAGCTGGGTTTGGTCAGGACTATCAAAGTCACAAAT
CAATTGAGTATTTAAAGAGAATGAGAGAGTCTGGTTTTGAACCGAACGAA
GTTACATGCACTTCTGTTCTTGGAGCGTGTTTTCGTTCAGGGGATGTTGA
AACCGGTAGGAGTATATTCAGTAGCATGCTTAACCCTAGTGTTACCGCTT
GGAATGCTTTGCTCTCTGGCTACTCCAAGTTTGAACACTATGAGGAAGCA
ATCAACCAGTTCAGAGAAATGCACCTTCAGCATCTGAACCCAGATAGAAC
AACTTTGAGTGTGATACTAAGCTCATGCGCGAGATTGAGGTTTCTGGAAG
GAGGGAAACAGATCCACGGTGTAGCGATAAGGAACAATATCTCTAGGAAC
AGTCACATAGTTAGTGGTCTTATTGCAGTGTACTCTGAATGTGAGAAGAT
AGAGATCTCTGAACATATCTTTGATGATTGTACAACAGAACTAGATATAG
CTTGTTGGAACTCCATGATGGCAGGTCTCAGTCGCAACTCGCTTGACACA
AAAGCTTTAATGCTATTCAGAAGATTGCTTCGGACTGGTGTGTTGTTTCC
TAATGAAACTTCATACGCTACTTTATTAGGCAGCTGTTCGAGGTTATGTA
GTTTGCTCCATGGAAGACAGTTTCATGGACATGTAGTGAAGAGCGGATAT
GCAAGTGATCCCTTTGTTGAAACCGCTCTTACGGATATGTACAGTAAGTG
CGGTGAAATAGACTCGGCTCGAGAGTTGTTTGATACCGTGTTGGTTAAAA
GCATAGTTCTTTGGAACGAGATGATACACGGGTATGCTCATAACGGACGA
GGTGATGAAGCTGTTGGTCTCTACAGAGAGATGATATCATGGGGAGAGAA
GCCCGACCGGATAACTTTTGTCTCTGTGTTGACTGCTTGTAGCCACTCAG
GACTGGTGGACACCGGGCTGGAGATACTCAGTTCCATGCAGAGAGATCAT
GGTATTGAGCCGGAGCTGGATCATTATATATGCATAGTTGATTGTCTTGG
AAGAGCTGGCCGGCTTGAAGACGCAGAGGCGCTTGCAGAAGCTACACCAT
ACAAAAACAGCTCTGTTCTATGGGAGATTCTGCTTAGTTCATGTAGAGTC
CATGGTGATGTGAGCTTGGCTAGACGAATCGCAGGGAAACTCGTAGCTCT
GGATCCTCGGAACTCAGCAACTTATGTGCTGCTAAGCAACATATATACTT
CTGTGAGACGGTGGGATGAAGCTGCAGCTCTTCAAGGGTTGATGAACAAG
AACAGAGTGTATAAGACTCCAGGTCACAGCTGGATCATAGAGAACAATAA
TAGCTTGTAA back to topCoding sequence (CDS) from alignment at westarv0_A01:1952747..1955056- >BnaA01T0030400WE ID=BnaA01T0030400WE|Name=BnaA01T0030400WE|organism=Brassica napus Westar|type=CDS|length=2310bp|location=Sequence derived from alignment at westarv0_A01:1952747..1955056- (Brassica napus Westar)
ATGCATAGTGGAAGCAATCGTTACTTAGCGAATCTCTTACGTCTTTGCAA
AGATCAAAAGTGCAAACTTTCCGGGAAAGTCATTCATGGGTCCATCCTTC
GGACTGGATTTTCCATCGACACTTATCTCTGCAATCGCTTACTAGATTTA
TACTGCGAGTGTGGTGATAAAGGTTATGCACGCAAGGTGTTCTACGAAAT
GCCTGTGAGAGATGTTTACTCGTCGAATGCTTTCTTGACGTTTTGTTGTA
AAGTTGGGAACTTGGGTGAAGCCACTAAGGTGTTTGATGCAATGCCTGAG
AGAGATGTAGTGTCGTGGAACAACATGATTAGTGTATTGGTTCGTAAAGG
TTTAGAGGAGGAAGCGTTGGTTGTTTATGAGAGGATGGTTTCTCAAGGTT
TTTTGCCTTCTCGGTTCACGCTAGCTAGCGTTTTGAGCGCTTGTAGCAAG
CTTTTGGATGGTGTTACCGGTATGAGATGTCACGGGGTTGCTGTTAAGAT
TGGTCTTGATGGTAACATTTTTGTTGGCAATGCGTTGTTGTCTATGTATG
CTAAGTGCGGGCTTATGGTTGAACATGGTGTTAGGGTCTTTGAATGTTTC
CCTGAGCCTAATGAGGTCTCTTTTACCGCTGTGATCAACGGGTTAGCTCG
GGAGAATAGAGTTTTGGAGGCAGTTCACATGTTTAGATCGATGTGCGAGA
AAGGTGTCAAGGTGGATCCTGTTTGCTTGTCTAATATTCTCAGAATCTCT
GCTCCAAGAGAAGAATGTGAGAGCTTGAATGAAATCAATCGCAATGTGCT
GGGTAAACAGATCCATAGTCTCATGTTGAGACTTGGGTTACAAGGAGATC
TTCATCTGAGCAATTCTCTGCTCGAAACTTATGCAAAGAATGGAGATATG
AATGGTGCAGAGTTGATTTTTACTGAGATGCCTGAAGTAAATATTGTCTC
TTGGAACATTATGATAGCTGGGTTTGGTCAGGACTATCAAAGTCACAAAT
CAATTGAGTATTTAAAGAGAATGAGAGAGTCTGGTTTTGAACCGAACGAA
GTTACATGCACTTCTGTTCTTGGAGCGTGTTTTCGTTCAGGGGATGTTGA
AACCGGTAGGAGTATATTCAGTAGCATGCTTAACCCTAGTGTTACCGCTT
GGAATGCTTTGCTCTCTGGCTACTCCAAGTTTGAACACTATGAGGAAGCA
ATCAACCAGTTCAGAGAAATGCACCTTCAGCATCTGAACCCAGATAGAAC
AACTTTGAGTGTGATACTAAGCTCATGCGCGAGATTGAGGTTTCTGGAAG
GAGGGAAACAGATCCACGGTGTAGCGATAAGGAACAATATCTCTAGGAAC
AGTCACATAGTTAGTGGTCTTATTGCAGTGTACTCTGAATGTGAGAAGAT
AGAGATCTCTGAACATATCTTTGATGATTGTACAACAGAACTAGATATAG
CTTGTTGGAACTCCATGATGGCAGGTCTCAGTCGCAACTCGCTTGACACA
AAAGCTTTAATGCTATTCAGAAGATTGCTTCGGACTGGTGTGTTGTTTCC
TAATGAAACTTCATACGCTACTTTATTAGGCAGCTGTTCGAGGTTATGTA
GTTTGCTCCATGGAAGACAGTTTCATGGACATGTAGTGAAGAGCGGATAT
GCAAGTGATCCCTTTGTTGAAACCGCTCTTACGGATATGTACAGTAAGTG
CGGTGAAATAGACTCGGCTCGAGAGTTGTTTGATACCGTGTTGGTTAAAA
GCATAGTTCTTTGGAACGAGATGATACACGGGTATGCTCATAACGGACGA
GGTGATGAAGCTGTTGGTCTCTACAGAGAGATGATATCATGGGGAGAGAA
GCCCGACCGGATAACTTTTGTCTCTGTGTTGACTGCTTGTAGCCACTCAG
GACTGGTGGACACCGGGCTGGAGATACTCAGTTCCATGCAGAGAGATCAT
GGTATTGAGCCGGAGCTGGATCATTATATATGCATAGTTGATTGTCTTGG
AAGAGCTGGCCGGCTTGAAGACGCAGAGGCGCTTGCAGAAGCTACACCAT
ACAAAAACAGCTCTGTTCTATGGGAGATTCTGCTTAGTTCATGTAGAGTC
CATGGTGATGTGAGCTTGGCTAGACGAATCGCAGGGAAACTCGTAGCTCT
GGATCCTCGGAACTCAGCAACTTATGTGCTGCTAAGCAACATATATACTT
CTGTGAGACGGTGGGATGAAGCTGCAGCTCTTCAAGGGTTGATGAACAAG
AACAGAGTGTATAAGACTCCAGGTCACAGCTGGATCATAGAGAACAATAA
TAGCTTGTAA back to top
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