BnaA01T0030400WE (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	BnaA01T0030400WE
Unique Name	BnaA01T0030400WE
Type	mRNA
Organism	Brassica napus Westar (cv. Westar, rapeseed)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
westarv0_A01	contig	westarv0_A01:1952747..1955056 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Brassica napus Westar OGS1.0	2022-04-13 .642364

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
BnaA01G0030400WE	BnaA01G0030400WE	Brassica napus Westar	gene	westarv0_A01 1952747..1955056 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BnaA01T0030400WE.exon1	BnaA01T0030400WE.exon1	Brassica napus Westar	exon	westarv0_A01 1952747..1955056 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
cds.BnaA01T0030400WE	cds.BnaA01T0030400WE	Brassica napus Westar	CDS	westarv0_A01 1952747..1955056 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
BnaA01T0030400WE	BnaA01T0030400WE-P	Brassica napus Westar	polypeptide	westarv0_A01 1952747..1955056 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at westarv0_A01:1952747..1955056-
coding sequence from alignment at westarv0_A01:1952747..1955056-

spliced messenger RNA

>BnaA01T0030400WE ID=BnaA01T0030400WE|Name=BnaA01T0030400WE|organism=Brassica napus Westar|type=mRNA|length=2310bp|location=Sequence derived from alignment at westarv0_A01:1952747..1955056- (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATAGTGGAAGCAATCGTTACTTAGCGAATCTCTTACGTCTTTGCAA
AGATCAAAAGTGCAAACTTTCCGGGAAAGTCATTCATGGGTCCATCCTTC
GGACTGGATTTTCCATCGACACTTATCTCTGCAATCGCTTACTAGATTTA
TACTGCGAGTGTGGTGATAAAGGTTATGCACGCAAGGTGTTCTACGAAAT
GCCTGTGAGAGATGTTTACTCGTCGAATGCTTTCTTGACGTTTTGTTGTA
AAGTTGGGAACTTGGGTGAAGCCACTAAGGTGTTTGATGCAATGCCTGAG
AGAGATGTAGTGTCGTGGAACAACATGATTAGTGTATTGGTTCGTAAAGG
TTTAGAGGAGGAAGCGTTGGTTGTTTATGAGAGGATGGTTTCTCAAGGTT
TTTTGCCTTCTCGGTTCACGCTAGCTAGCGTTTTGAGCGCTTGTAGCAAG
CTTTTGGATGGTGTTACCGGTATGAGATGTCACGGGGTTGCTGTTAAGAT
TGGTCTTGATGGTAACATTTTTGTTGGCAATGCGTTGTTGTCTATGTATG
CTAAGTGCGGGCTTATGGTTGAACATGGTGTTAGGGTCTTTGAATGTTTC
CCTGAGCCTAATGAGGTCTCTTTTACCGCTGTGATCAACGGGTTAGCTCG
GGAGAATAGAGTTTTGGAGGCAGTTCACATGTTTAGATCGATGTGCGAGA
AAGGTGTCAAGGTGGATCCTGTTTGCTTGTCTAATATTCTCAGAATCTCT
GCTCCAAGAGAAGAATGTGAGAGCTTGAATGAAATCAATCGCAATGTGCT
GGGTAAACAGATCCATAGTCTCATGTTGAGACTTGGGTTACAAGGAGATC
TTCATCTGAGCAATTCTCTGCTCGAAACTTATGCAAAGAATGGAGATATG
AATGGTGCAGAGTTGATTTTTACTGAGATGCCTGAAGTAAATATTGTCTC
TTGGAACATTATGATAGCTGGGTTTGGTCAGGACTATCAAAGTCACAAAT
CAATTGAGTATTTAAAGAGAATGAGAGAGTCTGGTTTTGAACCGAACGAA
GTTACATGCACTTCTGTTCTTGGAGCGTGTTTTCGTTCAGGGGATGTTGA
AACCGGTAGGAGTATATTCAGTAGCATGCTTAACCCTAGTGTTACCGCTT
GGAATGCTTTGCTCTCTGGCTACTCCAAGTTTGAACACTATGAGGAAGCA
ATCAACCAGTTCAGAGAAATGCACCTTCAGCATCTGAACCCAGATAGAAC
AACTTTGAGTGTGATACTAAGCTCATGCGCGAGATTGAGGTTTCTGGAAG
GAGGGAAACAGATCCACGGTGTAGCGATAAGGAACAATATCTCTAGGAAC
AGTCACATAGTTAGTGGTCTTATTGCAGTGTACTCTGAATGTGAGAAGAT
AGAGATCTCTGAACATATCTTTGATGATTGTACAACAGAACTAGATATAG
CTTGTTGGAACTCCATGATGGCAGGTCTCAGTCGCAACTCGCTTGACACA
AAAGCTTTAATGCTATTCAGAAGATTGCTTCGGACTGGTGTGTTGTTTCC
TAATGAAACTTCATACGCTACTTTATTAGGCAGCTGTTCGAGGTTATGTA
GTTTGCTCCATGGAAGACAGTTTCATGGACATGTAGTGAAGAGCGGATAT
GCAAGTGATCCCTTTGTTGAAACCGCTCTTACGGATATGTACAGTAAGTG
CGGTGAAATAGACTCGGCTCGAGAGTTGTTTGATACCGTGTTGGTTAAAA
GCATAGTTCTTTGGAACGAGATGATACACGGGTATGCTCATAACGGACGA
GGTGATGAAGCTGTTGGTCTCTACAGAGAGATGATATCATGGGGAGAGAA
GCCCGACCGGATAACTTTTGTCTCTGTGTTGACTGCTTGTAGCCACTCAG
GACTGGTGGACACCGGGCTGGAGATACTCAGTTCCATGCAGAGAGATCAT
GGTATTGAGCCGGAGCTGGATCATTATATATGCATAGTTGATTGTCTTGG
AAGAGCTGGCCGGCTTGAAGACGCAGAGGCGCTTGCAGAAGCTACACCAT
ACAAAAACAGCTCTGTTCTATGGGAGATTCTGCTTAGTTCATGTAGAGTC
CATGGTGATGTGAGCTTGGCTAGACGAATCGCAGGGAAACTCGTAGCTCT
GGATCCTCGGAACTCAGCAACTTATGTGCTGCTAAGCAACATATATACTT
CTGTGAGACGGTGGGATGAAGCTGCAGCTCTTCAAGGGTTGATGAACAAG
AACAGAGTGTATAAGACTCCAGGTCACAGCTGGATCATAGAGAACAATAA
TAGCTTGTAA

protein sequence of BnaA01T0030400WE

>BnaA01T0030400WE-P ID=BnaA01T0030400WE-P|Name=BnaA01T0030400WE|organism=Brassica napus Westar|type=polypeptide|length=770bp
MHSGSNRYLANLLRLCKDQKCKLSGKVIHGSILRTGFSIDTYLCNRLLDL
YCECGDKGYARKVFYEMPVRDVYSSNAFLTFCCKVGNLGEATKVFDAMPE
RDVVSWNNMISVLVRKGLEEEALVVYERMVSQGFLPSRFTLASVLSACSK
LLDGVTGMRCHGVAVKIGLDGNIFVGNALLSMYAKCGLMVEHGVRVFECF
PEPNEVSFTAVINGLARENRVLEAVHMFRSMCEKGVKVDPVCLSNILRIS
APREECESLNEINRNVLGKQIHSLMLRLGLQGDLHLSNSLLETYAKNGDM
NGAELIFTEMPEVNIVSWNIMIAGFGQDYQSHKSIEYLKRMRESGFEPNE
VTCTSVLGACFRSGDVETGRSIFSSMLNPSVTAWNALLSGYSKFEHYEEA
INQFREMHLQHLNPDRTTLSVILSSCARLRFLEGGKQIHGVAIRNNISRN
SHIVSGLIAVYSECEKIEISEHIFDDCTTELDIACWNSMMAGLSRNSLDT
KALMLFRRLLRTGVLFPNETSYATLLGSCSRLCSLLHGRQFHGHVVKSGY
ASDPFVETALTDMYSKCGEIDSARELFDTVLVKSIVLWNEMIHGYAHNGR
GDEAVGLYREMISWGEKPDRITFVSVLTACSHSGLVDTGLEILSSMQRDH
GIEPELDHYICIVDCLGRAGRLEDAEALAEATPYKNSSVLWEILLSSCRV
HGDVSLARRIAGKLVALDPRNSATYVLLSNIYTSVRRWDEAAALQGLMNK
NRVYKTPGHSWIIENNNSL.

mRNA from alignment at westarv0_A01:1952747..1955056-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>BnaA01T0030400WE ID=BnaA01T0030400WE|Name=BnaA01T0030400WE|organism=Brassica napus Westar|type=mRNA|length=2310bp|location=Sequence derived from alignment at westarv0_A01:1952747..1955056- (Brassica napus Westar)
ATGCATAGTGGAAGCAATCGTTACTTAGCGAATCTCTTACGTCTTTGCAA
AGATCAAAAGTGCAAACTTTCCGGGAAAGTCATTCATGGGTCCATCCTTC
GGACTGGATTTTCCATCGACACTTATCTCTGCAATCGCTTACTAGATTTA
TACTGCGAGTGTGGTGATAAAGGTTATGCACGCAAGGTGTTCTACGAAAT
GCCTGTGAGAGATGTTTACTCGTCGAATGCTTTCTTGACGTTTTGTTGTA
AAGTTGGGAACTTGGGTGAAGCCACTAAGGTGTTTGATGCAATGCCTGAG
AGAGATGTAGTGTCGTGGAACAACATGATTAGTGTATTGGTTCGTAAAGG
TTTAGAGGAGGAAGCGTTGGTTGTTTATGAGAGGATGGTTTCTCAAGGTT
TTTTGCCTTCTCGGTTCACGCTAGCTAGCGTTTTGAGCGCTTGTAGCAAG
CTTTTGGATGGTGTTACCGGTATGAGATGTCACGGGGTTGCTGTTAAGAT
TGGTCTTGATGGTAACATTTTTGTTGGCAATGCGTTGTTGTCTATGTATG
CTAAGTGCGGGCTTATGGTTGAACATGGTGTTAGGGTCTTTGAATGTTTC
CCTGAGCCTAATGAGGTCTCTTTTACCGCTGTGATCAACGGGTTAGCTCG
GGAGAATAGAGTTTTGGAGGCAGTTCACATGTTTAGATCGATGTGCGAGA
AAGGTGTCAAGGTGGATCCTGTTTGCTTGTCTAATATTCTCAGAATCTCT
GCTCCAAGAGAAGAATGTGAGAGCTTGAATGAAATCAATCGCAATGTGCT
GGGTAAACAGATCCATAGTCTCATGTTGAGACTTGGGTTACAAGGAGATC
TTCATCTGAGCAATTCTCTGCTCGAAACTTATGCAAAGAATGGAGATATG
AATGGTGCAGAGTTGATTTTTACTGAGATGCCTGAAGTAAATATTGTCTC
TTGGAACATTATGATAGCTGGGTTTGGTCAGGACTATCAAAGTCACAAAT
CAATTGAGTATTTAAAGAGAATGAGAGAGTCTGGTTTTGAACCGAACGAA
GTTACATGCACTTCTGTTCTTGGAGCGTGTTTTCGTTCAGGGGATGTTGA
AACCGGTAGGAGTATATTCAGTAGCATGCTTAACCCTAGTGTTACCGCTT
GGAATGCTTTGCTCTCTGGCTACTCCAAGTTTGAACACTATGAGGAAGCA
ATCAACCAGTTCAGAGAAATGCACCTTCAGCATCTGAACCCAGATAGAAC
AACTTTGAGTGTGATACTAAGCTCATGCGCGAGATTGAGGTTTCTGGAAG
GAGGGAAACAGATCCACGGTGTAGCGATAAGGAACAATATCTCTAGGAAC
AGTCACATAGTTAGTGGTCTTATTGCAGTGTACTCTGAATGTGAGAAGAT
AGAGATCTCTGAACATATCTTTGATGATTGTACAACAGAACTAGATATAG
CTTGTTGGAACTCCATGATGGCAGGTCTCAGTCGCAACTCGCTTGACACA
AAAGCTTTAATGCTATTCAGAAGATTGCTTCGGACTGGTGTGTTGTTTCC
TAATGAAACTTCATACGCTACTTTATTAGGCAGCTGTTCGAGGTTATGTA
GTTTGCTCCATGGAAGACAGTTTCATGGACATGTAGTGAAGAGCGGATAT
GCAAGTGATCCCTTTGTTGAAACCGCTCTTACGGATATGTACAGTAAGTG
CGGTGAAATAGACTCGGCTCGAGAGTTGTTTGATACCGTGTTGGTTAAAA
GCATAGTTCTTTGGAACGAGATGATACACGGGTATGCTCATAACGGACGA
GGTGATGAAGCTGTTGGTCTCTACAGAGAGATGATATCATGGGGAGAGAA
GCCCGACCGGATAACTTTTGTCTCTGTGTTGACTGCTTGTAGCCACTCAG
GACTGGTGGACACCGGGCTGGAGATACTCAGTTCCATGCAGAGAGATCAT
GGTATTGAGCCGGAGCTGGATCATTATATATGCATAGTTGATTGTCTTGG
AAGAGCTGGCCGGCTTGAAGACGCAGAGGCGCTTGCAGAAGCTACACCAT
ACAAAAACAGCTCTGTTCTATGGGAGATTCTGCTTAGTTCATGTAGAGTC
CATGGTGATGTGAGCTTGGCTAGACGAATCGCAGGGAAACTCGTAGCTCT
GGATCCTCGGAACTCAGCAACTTATGTGCTGCTAAGCAACATATATACTT
CTGTGAGACGGTGGGATGAAGCTGCAGCTCTTCAAGGGTTGATGAACAAG
AACAGAGTGTATAAGACTCCAGGTCACAGCTGGATCATAGAGAACAATAA
TAGCTTGTAA

Coding sequence (CDS) from alignment at westarv0_A01:1952747..1955056-

>BnaA01T0030400WE ID=BnaA01T0030400WE|Name=BnaA01T0030400WE|organism=Brassica napus Westar|type=CDS|length=2310bp|location=Sequence derived from alignment at westarv0_A01:1952747..1955056- (Brassica napus Westar)
ATGCATAGTGGAAGCAATCGTTACTTAGCGAATCTCTTACGTCTTTGCAA
AGATCAAAAGTGCAAACTTTCCGGGAAAGTCATTCATGGGTCCATCCTTC
GGACTGGATTTTCCATCGACACTTATCTCTGCAATCGCTTACTAGATTTA
TACTGCGAGTGTGGTGATAAAGGTTATGCACGCAAGGTGTTCTACGAAAT
GCCTGTGAGAGATGTTTACTCGTCGAATGCTTTCTTGACGTTTTGTTGTA
AAGTTGGGAACTTGGGTGAAGCCACTAAGGTGTTTGATGCAATGCCTGAG
AGAGATGTAGTGTCGTGGAACAACATGATTAGTGTATTGGTTCGTAAAGG
TTTAGAGGAGGAAGCGTTGGTTGTTTATGAGAGGATGGTTTCTCAAGGTT
TTTTGCCTTCTCGGTTCACGCTAGCTAGCGTTTTGAGCGCTTGTAGCAAG
CTTTTGGATGGTGTTACCGGTATGAGATGTCACGGGGTTGCTGTTAAGAT
TGGTCTTGATGGTAACATTTTTGTTGGCAATGCGTTGTTGTCTATGTATG
CTAAGTGCGGGCTTATGGTTGAACATGGTGTTAGGGTCTTTGAATGTTTC
CCTGAGCCTAATGAGGTCTCTTTTACCGCTGTGATCAACGGGTTAGCTCG
GGAGAATAGAGTTTTGGAGGCAGTTCACATGTTTAGATCGATGTGCGAGA
AAGGTGTCAAGGTGGATCCTGTTTGCTTGTCTAATATTCTCAGAATCTCT
GCTCCAAGAGAAGAATGTGAGAGCTTGAATGAAATCAATCGCAATGTGCT
GGGTAAACAGATCCATAGTCTCATGTTGAGACTTGGGTTACAAGGAGATC
TTCATCTGAGCAATTCTCTGCTCGAAACTTATGCAAAGAATGGAGATATG
AATGGTGCAGAGTTGATTTTTACTGAGATGCCTGAAGTAAATATTGTCTC
TTGGAACATTATGATAGCTGGGTTTGGTCAGGACTATCAAAGTCACAAAT
CAATTGAGTATTTAAAGAGAATGAGAGAGTCTGGTTTTGAACCGAACGAA
GTTACATGCACTTCTGTTCTTGGAGCGTGTTTTCGTTCAGGGGATGTTGA
AACCGGTAGGAGTATATTCAGTAGCATGCTTAACCCTAGTGTTACCGCTT
GGAATGCTTTGCTCTCTGGCTACTCCAAGTTTGAACACTATGAGGAAGCA
ATCAACCAGTTCAGAGAAATGCACCTTCAGCATCTGAACCCAGATAGAAC
AACTTTGAGTGTGATACTAAGCTCATGCGCGAGATTGAGGTTTCTGGAAG
GAGGGAAACAGATCCACGGTGTAGCGATAAGGAACAATATCTCTAGGAAC
AGTCACATAGTTAGTGGTCTTATTGCAGTGTACTCTGAATGTGAGAAGAT
AGAGATCTCTGAACATATCTTTGATGATTGTACAACAGAACTAGATATAG
CTTGTTGGAACTCCATGATGGCAGGTCTCAGTCGCAACTCGCTTGACACA
AAAGCTTTAATGCTATTCAGAAGATTGCTTCGGACTGGTGTGTTGTTTCC
TAATGAAACTTCATACGCTACTTTATTAGGCAGCTGTTCGAGGTTATGTA
GTTTGCTCCATGGAAGACAGTTTCATGGACATGTAGTGAAGAGCGGATAT
GCAAGTGATCCCTTTGTTGAAACCGCTCTTACGGATATGTACAGTAAGTG
CGGTGAAATAGACTCGGCTCGAGAGTTGTTTGATACCGTGTTGGTTAAAA
GCATAGTTCTTTGGAACGAGATGATACACGGGTATGCTCATAACGGACGA
GGTGATGAAGCTGTTGGTCTCTACAGAGAGATGATATCATGGGGAGAGAA
GCCCGACCGGATAACTTTTGTCTCTGTGTTGACTGCTTGTAGCCACTCAG
GACTGGTGGACACCGGGCTGGAGATACTCAGTTCCATGCAGAGAGATCAT
GGTATTGAGCCGGAGCTGGATCATTATATATGCATAGTTGATTGTCTTGG
AAGAGCTGGCCGGCTTGAAGACGCAGAGGCGCTTGCAGAAGCTACACCAT
ACAAAAACAGCTCTGTTCTATGGGAGATTCTGCTTAGTTCATGTAGAGTC
CATGGTGATGTGAGCTTGGCTAGACGAATCGCAGGGAAACTCGTAGCTCT
GGATCCTCGGAACTCAGCAACTTATGTGCTGCTAAGCAACATATATACTT
CTGTGAGACGGTGGGATGAAGCTGCAGCTCTTCAAGGGTTGATGAACAAG
AACAGAGTGTATAAGACTCCAGGTCACAGCTGGATCATAGAGAACAATAA
TAGCTTGTAA

Orthology

View orthology data for BnaA01T0030400WE