BnaA01T0030400WE (mRNA) Brassica napus Westar

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBnaA01T0030400WE
Unique NameBnaA01T0030400WE
TypemRNA
OrganismBrassica napus Westar (cv. Westar, rapeseed)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
westarv0_A01contigwestarv0_A01:1952747..1955056 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica napus Westar OGS1.02022-04-13 .642364
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BnaA01G0030400WEBnaA01G0030400WEBrassica napus Westargenewestarv0_A01 1952747..1955056 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0030400WE.exon1BnaA01T0030400WE.exon1Brassica napus Westarexonwestarv0_A01 1952747..1955056 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
cds.BnaA01T0030400WEcds.BnaA01T0030400WEBrassica napus WestarCDSwestarv0_A01 1952747..1955056 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BnaA01T0030400WEBnaA01T0030400WE-PBrassica napus Westarpolypeptidewestarv0_A01 1952747..1955056 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BnaA01T0030400WE ID=BnaA01T0030400WE|Name=BnaA01T0030400WE|organism=Brassica napus Westar|type=mRNA|length=2310bp|location=Sequence derived from alignment at westarv0_A01:1952747..1955056- (Brassica napus Westar)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATAGTGGAAGCAATCGTTACTTAGCGAATCTCTTACGTCTTTGCAA
AGATCAAAAGTGCAAACTTTCCGGGAAAGTCATTCATGGGTCCATCCTTC
GGACTGGATTTTCCATCGACACTTATCTCTGCAATCGCTTACTAGATTTA
TACTGCGAGTGTGGTGATAAAGGTTATGCACGCAAGGTGTTCTACGAAAT
GCCTGTGAGAGATGTTTACTCGTCGAATGCTTTCTTGACGTTTTGTTGTA
AAGTTGGGAACTTGGGTGAAGCCACTAAGGTGTTTGATGCAATGCCTGAG
AGAGATGTAGTGTCGTGGAACAACATGATTAGTGTATTGGTTCGTAAAGG
TTTAGAGGAGGAAGCGTTGGTTGTTTATGAGAGGATGGTTTCTCAAGGTT
TTTTGCCTTCTCGGTTCACGCTAGCTAGCGTTTTGAGCGCTTGTAGCAAG
CTTTTGGATGGTGTTACCGGTATGAGATGTCACGGGGTTGCTGTTAAGAT
TGGTCTTGATGGTAACATTTTTGTTGGCAATGCGTTGTTGTCTATGTATG
CTAAGTGCGGGCTTATGGTTGAACATGGTGTTAGGGTCTTTGAATGTTTC
CCTGAGCCTAATGAGGTCTCTTTTACCGCTGTGATCAACGGGTTAGCTCG
GGAGAATAGAGTTTTGGAGGCAGTTCACATGTTTAGATCGATGTGCGAGA
AAGGTGTCAAGGTGGATCCTGTTTGCTTGTCTAATATTCTCAGAATCTCT
GCTCCAAGAGAAGAATGTGAGAGCTTGAATGAAATCAATCGCAATGTGCT
GGGTAAACAGATCCATAGTCTCATGTTGAGACTTGGGTTACAAGGAGATC
TTCATCTGAGCAATTCTCTGCTCGAAACTTATGCAAAGAATGGAGATATG
AATGGTGCAGAGTTGATTTTTACTGAGATGCCTGAAGTAAATATTGTCTC
TTGGAACATTATGATAGCTGGGTTTGGTCAGGACTATCAAAGTCACAAAT
CAATTGAGTATTTAAAGAGAATGAGAGAGTCTGGTTTTGAACCGAACGAA
GTTACATGCACTTCTGTTCTTGGAGCGTGTTTTCGTTCAGGGGATGTTGA
AACCGGTAGGAGTATATTCAGTAGCATGCTTAACCCTAGTGTTACCGCTT
GGAATGCTTTGCTCTCTGGCTACTCCAAGTTTGAACACTATGAGGAAGCA
ATCAACCAGTTCAGAGAAATGCACCTTCAGCATCTGAACCCAGATAGAAC
AACTTTGAGTGTGATACTAAGCTCATGCGCGAGATTGAGGTTTCTGGAAG
GAGGGAAACAGATCCACGGTGTAGCGATAAGGAACAATATCTCTAGGAAC
AGTCACATAGTTAGTGGTCTTATTGCAGTGTACTCTGAATGTGAGAAGAT
AGAGATCTCTGAACATATCTTTGATGATTGTACAACAGAACTAGATATAG
CTTGTTGGAACTCCATGATGGCAGGTCTCAGTCGCAACTCGCTTGACACA
AAAGCTTTAATGCTATTCAGAAGATTGCTTCGGACTGGTGTGTTGTTTCC
TAATGAAACTTCATACGCTACTTTATTAGGCAGCTGTTCGAGGTTATGTA
GTTTGCTCCATGGAAGACAGTTTCATGGACATGTAGTGAAGAGCGGATAT
GCAAGTGATCCCTTTGTTGAAACCGCTCTTACGGATATGTACAGTAAGTG
CGGTGAAATAGACTCGGCTCGAGAGTTGTTTGATACCGTGTTGGTTAAAA
GCATAGTTCTTTGGAACGAGATGATACACGGGTATGCTCATAACGGACGA
GGTGATGAAGCTGTTGGTCTCTACAGAGAGATGATATCATGGGGAGAGAA
GCCCGACCGGATAACTTTTGTCTCTGTGTTGACTGCTTGTAGCCACTCAG
GACTGGTGGACACCGGGCTGGAGATACTCAGTTCCATGCAGAGAGATCAT
GGTATTGAGCCGGAGCTGGATCATTATATATGCATAGTTGATTGTCTTGG
AAGAGCTGGCCGGCTTGAAGACGCAGAGGCGCTTGCAGAAGCTACACCAT
ACAAAAACAGCTCTGTTCTATGGGAGATTCTGCTTAGTTCATGTAGAGTC
CATGGTGATGTGAGCTTGGCTAGACGAATCGCAGGGAAACTCGTAGCTCT
GGATCCTCGGAACTCAGCAACTTATGTGCTGCTAAGCAACATATATACTT
CTGTGAGACGGTGGGATGAAGCTGCAGCTCTTCAAGGGTTGATGAACAAG
AACAGAGTGTATAAGACTCCAGGTCACAGCTGGATCATAGAGAACAATAA
TAGCTTGTAA
back to top

protein sequence of BnaA01T0030400WE

>BnaA01T0030400WE-P ID=BnaA01T0030400WE-P|Name=BnaA01T0030400WE|organism=Brassica napus Westar|type=polypeptide|length=770bp
MHSGSNRYLANLLRLCKDQKCKLSGKVIHGSILRTGFSIDTYLCNRLLDL
YCECGDKGYARKVFYEMPVRDVYSSNAFLTFCCKVGNLGEATKVFDAMPE
RDVVSWNNMISVLVRKGLEEEALVVYERMVSQGFLPSRFTLASVLSACSK
LLDGVTGMRCHGVAVKIGLDGNIFVGNALLSMYAKCGLMVEHGVRVFECF
PEPNEVSFTAVINGLARENRVLEAVHMFRSMCEKGVKVDPVCLSNILRIS
APREECESLNEINRNVLGKQIHSLMLRLGLQGDLHLSNSLLETYAKNGDM
NGAELIFTEMPEVNIVSWNIMIAGFGQDYQSHKSIEYLKRMRESGFEPNE
VTCTSVLGACFRSGDVETGRSIFSSMLNPSVTAWNALLSGYSKFEHYEEA
INQFREMHLQHLNPDRTTLSVILSSCARLRFLEGGKQIHGVAIRNNISRN
SHIVSGLIAVYSECEKIEISEHIFDDCTTELDIACWNSMMAGLSRNSLDT
KALMLFRRLLRTGVLFPNETSYATLLGSCSRLCSLLHGRQFHGHVVKSGY
ASDPFVETALTDMYSKCGEIDSARELFDTVLVKSIVLWNEMIHGYAHNGR
GDEAVGLYREMISWGEKPDRITFVSVLTACSHSGLVDTGLEILSSMQRDH
GIEPELDHYICIVDCLGRAGRLEDAEALAEATPYKNSSVLWEILLSSCRV
HGDVSLARRIAGKLVALDPRNSATYVLLSNIYTSVRRWDEAAALQGLMNK
NRVYKTPGHSWIIENNNSL.
back to top

mRNA from alignment at westarv0_A01:1952747..1955056-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BnaA01T0030400WE ID=BnaA01T0030400WE|Name=BnaA01T0030400WE|organism=Brassica napus Westar|type=mRNA|length=2310bp|location=Sequence derived from alignment at westarv0_A01:1952747..1955056- (Brassica napus Westar)
ATGCATAGTGGAAGCAATCGTTACTTAGCGAATCTCTTACGTCTTTGCAA AGATCAAAAGTGCAAACTTTCCGGGAAAGTCATTCATGGGTCCATCCTTC GGACTGGATTTTCCATCGACACTTATCTCTGCAATCGCTTACTAGATTTA TACTGCGAGTGTGGTGATAAAGGTTATGCACGCAAGGTGTTCTACGAAAT GCCTGTGAGAGATGTTTACTCGTCGAATGCTTTCTTGACGTTTTGTTGTA AAGTTGGGAACTTGGGTGAAGCCACTAAGGTGTTTGATGCAATGCCTGAG AGAGATGTAGTGTCGTGGAACAACATGATTAGTGTATTGGTTCGTAAAGG TTTAGAGGAGGAAGCGTTGGTTGTTTATGAGAGGATGGTTTCTCAAGGTT TTTTGCCTTCTCGGTTCACGCTAGCTAGCGTTTTGAGCGCTTGTAGCAAG CTTTTGGATGGTGTTACCGGTATGAGATGTCACGGGGTTGCTGTTAAGAT TGGTCTTGATGGTAACATTTTTGTTGGCAATGCGTTGTTGTCTATGTATG CTAAGTGCGGGCTTATGGTTGAACATGGTGTTAGGGTCTTTGAATGTTTC CCTGAGCCTAATGAGGTCTCTTTTACCGCTGTGATCAACGGGTTAGCTCG GGAGAATAGAGTTTTGGAGGCAGTTCACATGTTTAGATCGATGTGCGAGA AAGGTGTCAAGGTGGATCCTGTTTGCTTGTCTAATATTCTCAGAATCTCT GCTCCAAGAGAAGAATGTGAGAGCTTGAATGAAATCAATCGCAATGTGCT GGGTAAACAGATCCATAGTCTCATGTTGAGACTTGGGTTACAAGGAGATC TTCATCTGAGCAATTCTCTGCTCGAAACTTATGCAAAGAATGGAGATATG AATGGTGCAGAGTTGATTTTTACTGAGATGCCTGAAGTAAATATTGTCTC TTGGAACATTATGATAGCTGGGTTTGGTCAGGACTATCAAAGTCACAAAT CAATTGAGTATTTAAAGAGAATGAGAGAGTCTGGTTTTGAACCGAACGAA GTTACATGCACTTCTGTTCTTGGAGCGTGTTTTCGTTCAGGGGATGTTGA AACCGGTAGGAGTATATTCAGTAGCATGCTTAACCCTAGTGTTACCGCTT GGAATGCTTTGCTCTCTGGCTACTCCAAGTTTGAACACTATGAGGAAGCA ATCAACCAGTTCAGAGAAATGCACCTTCAGCATCTGAACCCAGATAGAAC AACTTTGAGTGTGATACTAAGCTCATGCGCGAGATTGAGGTTTCTGGAAG GAGGGAAACAGATCCACGGTGTAGCGATAAGGAACAATATCTCTAGGAAC AGTCACATAGTTAGTGGTCTTATTGCAGTGTACTCTGAATGTGAGAAGAT AGAGATCTCTGAACATATCTTTGATGATTGTACAACAGAACTAGATATAG CTTGTTGGAACTCCATGATGGCAGGTCTCAGTCGCAACTCGCTTGACACA AAAGCTTTAATGCTATTCAGAAGATTGCTTCGGACTGGTGTGTTGTTTCC TAATGAAACTTCATACGCTACTTTATTAGGCAGCTGTTCGAGGTTATGTA GTTTGCTCCATGGAAGACAGTTTCATGGACATGTAGTGAAGAGCGGATAT GCAAGTGATCCCTTTGTTGAAACCGCTCTTACGGATATGTACAGTAAGTG CGGTGAAATAGACTCGGCTCGAGAGTTGTTTGATACCGTGTTGGTTAAAA GCATAGTTCTTTGGAACGAGATGATACACGGGTATGCTCATAACGGACGA GGTGATGAAGCTGTTGGTCTCTACAGAGAGATGATATCATGGGGAGAGAA GCCCGACCGGATAACTTTTGTCTCTGTGTTGACTGCTTGTAGCCACTCAG GACTGGTGGACACCGGGCTGGAGATACTCAGTTCCATGCAGAGAGATCAT GGTATTGAGCCGGAGCTGGATCATTATATATGCATAGTTGATTGTCTTGG AAGAGCTGGCCGGCTTGAAGACGCAGAGGCGCTTGCAGAAGCTACACCAT ACAAAAACAGCTCTGTTCTATGGGAGATTCTGCTTAGTTCATGTAGAGTC CATGGTGATGTGAGCTTGGCTAGACGAATCGCAGGGAAACTCGTAGCTCT GGATCCTCGGAACTCAGCAACTTATGTGCTGCTAAGCAACATATATACTT CTGTGAGACGGTGGGATGAAGCTGCAGCTCTTCAAGGGTTGATGAACAAG AACAGAGTGTATAAGACTCCAGGTCACAGCTGGATCATAGAGAACAATAA TAGCTTGTAA
back to top

Coding sequence (CDS) from alignment at westarv0_A01:1952747..1955056-

>BnaA01T0030400WE ID=BnaA01T0030400WE|Name=BnaA01T0030400WE|organism=Brassica napus Westar|type=CDS|length=2310bp|location=Sequence derived from alignment at westarv0_A01:1952747..1955056- (Brassica napus Westar)
ATGCATAGTGGAAGCAATCGTTACTTAGCGAATCTCTTACGTCTTTGCAA
AGATCAAAAGTGCAAACTTTCCGGGAAAGTCATTCATGGGTCCATCCTTC
GGACTGGATTTTCCATCGACACTTATCTCTGCAATCGCTTACTAGATTTA
TACTGCGAGTGTGGTGATAAAGGTTATGCACGCAAGGTGTTCTACGAAAT
GCCTGTGAGAGATGTTTACTCGTCGAATGCTTTCTTGACGTTTTGTTGTA
AAGTTGGGAACTTGGGTGAAGCCACTAAGGTGTTTGATGCAATGCCTGAG
AGAGATGTAGTGTCGTGGAACAACATGATTAGTGTATTGGTTCGTAAAGG
TTTAGAGGAGGAAGCGTTGGTTGTTTATGAGAGGATGGTTTCTCAAGGTT
TTTTGCCTTCTCGGTTCACGCTAGCTAGCGTTTTGAGCGCTTGTAGCAAG
CTTTTGGATGGTGTTACCGGTATGAGATGTCACGGGGTTGCTGTTAAGAT
TGGTCTTGATGGTAACATTTTTGTTGGCAATGCGTTGTTGTCTATGTATG
CTAAGTGCGGGCTTATGGTTGAACATGGTGTTAGGGTCTTTGAATGTTTC
CCTGAGCCTAATGAGGTCTCTTTTACCGCTGTGATCAACGGGTTAGCTCG
GGAGAATAGAGTTTTGGAGGCAGTTCACATGTTTAGATCGATGTGCGAGA
AAGGTGTCAAGGTGGATCCTGTTTGCTTGTCTAATATTCTCAGAATCTCT
GCTCCAAGAGAAGAATGTGAGAGCTTGAATGAAATCAATCGCAATGTGCT
GGGTAAACAGATCCATAGTCTCATGTTGAGACTTGGGTTACAAGGAGATC
TTCATCTGAGCAATTCTCTGCTCGAAACTTATGCAAAGAATGGAGATATG
AATGGTGCAGAGTTGATTTTTACTGAGATGCCTGAAGTAAATATTGTCTC
TTGGAACATTATGATAGCTGGGTTTGGTCAGGACTATCAAAGTCACAAAT
CAATTGAGTATTTAAAGAGAATGAGAGAGTCTGGTTTTGAACCGAACGAA
GTTACATGCACTTCTGTTCTTGGAGCGTGTTTTCGTTCAGGGGATGTTGA
AACCGGTAGGAGTATATTCAGTAGCATGCTTAACCCTAGTGTTACCGCTT
GGAATGCTTTGCTCTCTGGCTACTCCAAGTTTGAACACTATGAGGAAGCA
ATCAACCAGTTCAGAGAAATGCACCTTCAGCATCTGAACCCAGATAGAAC
AACTTTGAGTGTGATACTAAGCTCATGCGCGAGATTGAGGTTTCTGGAAG
GAGGGAAACAGATCCACGGTGTAGCGATAAGGAACAATATCTCTAGGAAC
AGTCACATAGTTAGTGGTCTTATTGCAGTGTACTCTGAATGTGAGAAGAT
AGAGATCTCTGAACATATCTTTGATGATTGTACAACAGAACTAGATATAG
CTTGTTGGAACTCCATGATGGCAGGTCTCAGTCGCAACTCGCTTGACACA
AAAGCTTTAATGCTATTCAGAAGATTGCTTCGGACTGGTGTGTTGTTTCC
TAATGAAACTTCATACGCTACTTTATTAGGCAGCTGTTCGAGGTTATGTA
GTTTGCTCCATGGAAGACAGTTTCATGGACATGTAGTGAAGAGCGGATAT
GCAAGTGATCCCTTTGTTGAAACCGCTCTTACGGATATGTACAGTAAGTG
CGGTGAAATAGACTCGGCTCGAGAGTTGTTTGATACCGTGTTGGTTAAAA
GCATAGTTCTTTGGAACGAGATGATACACGGGTATGCTCATAACGGACGA
GGTGATGAAGCTGTTGGTCTCTACAGAGAGATGATATCATGGGGAGAGAA
GCCCGACCGGATAACTTTTGTCTCTGTGTTGACTGCTTGTAGCCACTCAG
GACTGGTGGACACCGGGCTGGAGATACTCAGTTCCATGCAGAGAGATCAT
GGTATTGAGCCGGAGCTGGATCATTATATATGCATAGTTGATTGTCTTGG
AAGAGCTGGCCGGCTTGAAGACGCAGAGGCGCTTGCAGAAGCTACACCAT
ACAAAAACAGCTCTGTTCTATGGGAGATTCTGCTTAGTTCATGTAGAGTC
CATGGTGATGTGAGCTTGGCTAGACGAATCGCAGGGAAACTCGTAGCTCT
GGATCCTCGGAACTCAGCAACTTATGTGCTGCTAAGCAACATATATACTT
CTGTGAGACGGTGGGATGAAGCTGCAGCTCTTCAAGGGTTGATGAACAAG
AACAGAGTGTATAAGACTCCAGGTCACAGCTGGATCATAGAGAACAATAA
TAGCTTGTAA
back to top