C09p75940.1_BnaDARv10-PA (polypeptide) Brassica napus

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	C09p75940.1_BnaDARv10-RA
Unique Name	C09p75940.1_BnaDARv10-PA
Type	polypeptide
Organism	Brassica napus (cv. Darmor-bzh, rapeseed)
Sequence length	293

Homology

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BLAST of C09p75940.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD47516.1 (unnamed protein product, partial [Brassica oleracea])

HSP 1 Score: 515 bits (1327), Expect = 4.370e-183
Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 0

Query:    1 MESAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPSSQIPNNESQRSFPKSGNPAAAGPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEVVSDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDDQGDVDMDQPSNGEENVPSKKTVDADTNADAFQDSMLNEIFDSATDSRPTQKLPSDEEQNMDQSSELTEEQRARMEANRLKAXXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQA 292
            MESAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPSSQIPNNESQRSFPKSGNPAAAGPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEVVSDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDDQGDVDMDQPSNGEENVPSKKTVDADTNADAFQDSMLNEIFDSATDSRPTQKLPSDEEQNMDQSSELTEEQRARMEANRLKAXXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQA
Sbjct:   14 MESAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPSSQIPNNESQRSFPKSGNPAAAGPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEVVSDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDDQGDVDMDQPSNGEENVPSKKTVDADTNADAFQDSMLNEIFDSATDSRPTQKLPSDEEQNMDQSSELTEEQRARMEANRLKAXXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQA 305

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BLAST of C09p75940.1_BnaDARv10-RA vs. GenBank_protein
Match: CDY28711.1 (BnaCnng05970D [Brassica napus])

HSP 1 Score: 509 bits (1311), Expect = 7.170e-181
Identity = 291/292 (99.66%), Postives = 291/292 (99.66%), Query Frame = 0

Query:    1 MESAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPSSQIPNNESQRSFPKSGNPAAAGPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEVVSDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDDQGDVDMDQPSNGEENVPSKKTVDADTNADAFQDSMLNEIFDSATDSRPTQKLPSDEEQNMDQSSELTEEQRARMEANRLKAXXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQA 292
            MESAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPSSQIPNNESQRSFPKSGNPAAAGPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEV SDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDDQGDVDMDQPSNGEENVPSKKTVDADTNADAFQDSMLNEIFDSATDSRPTQKLPSDEEQNMDQSSELTEEQRARMEANRLKAXXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQA
Sbjct:    1 MESAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPSSQIPNNESQRSFPKSGNPAAAGPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEV-SDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDDQGDVDMDQPSNGEENVPSKKTVDADTNADAFQDSMLNEIFDSATDSRPTQKLPSDEEQNMDQSSELTEEQRARMEANRLKAXXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQA 291

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BLAST of C09p75940.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF3609955.1 (hypothetical protein DY000_02051621 [Brassica cretica])

HSP 1 Score: 484 bits (1245), Expect = 9.410e-171
Identity = 280/296 (94.59%), Postives = 284/296 (95.95%), Query Frame = 0

Query:    1 MESAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPSSQIPNNESQRSFPKSGNPAAAGPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEVVSDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDDQGDVDMDQPSNGEENVPSKKTVDA----DTNADAFQDSMLNEIFDSATDSRPTQKLPSDEEQNMDQSSELTEEQRARMEANRLKAXXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQA 292
            MESAPTGCFKCGRPGHWSRDCPSSAPA GDPAPSSQ PNN+SQRSFPKSGNPAA GPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEV SDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQV STKRVKICINELRERVASGVDPNKLY+KQEENAAHSDDQGDVDMDQPS  EEN+PSKKTVDA    DTNADAFQDSMLNEIF SATDSRPTQKLPSDEEQNMDQS+ELTEEQRARMEANRLKAXXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQA
Sbjct:    1 MESAPTGCFKCGRPGHWSRDCPSSAPAGGDPAPSSQTPNNDSQRSFPKSGNPAAGGPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEV-SDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVVSTKRVKICINELRERVASGVDPNKLYEKQEENAAHSDDQGDVDMDQPSYDEENIPSKKTVDAEADVDTNADAFQDSMLNEIFASATDSRPTQKLPSDEEQNMDQSNELTEEQRARMEANRLKAXXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQA 295

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BLAST of C09p75940.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013587447.1 (PREDICTED: TIMELESS-interacting protein [Brassica oleracea var. oleracea])

HSP 1 Score: 482 bits (1240), Expect = 4.530e-170
Identity = 277/292 (94.86%), Postives = 281/292 (96.23%), Query Frame = 0

Query:    1 MESAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPSSQIPNNESQRSFPKSGNPAAAGPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEVVSDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDDQGDVDMDQPSNGEENVPSKKTVDADTNADAFQDSMLNEIFDSATDSRPTQKLPSDEEQNMDQSSELTEEQRARMEANRLKAXXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQA 292
            MESAPTGCFKCGRPGHWSRDCPSSAPA GDPAPSSQ PNN+SQRSFPKSGNPAA GPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEV SDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDDQ DVDMDQPS  EEN+PSKKTVDADTNADAFQDS+LNEIF SATDSRPTQKLPSDE QNMDQS+ELTEEQRARMEANRLKA  XXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQA
Sbjct:    1 MESAPTGCFKCGRPGHWSRDCPSSAPAGGDPAPSSQTPNNDSQRSFPKSGNPAAGGPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEV-SDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDDQRDVDMDQPSYDEENIPSKKTVDADTNADAFQDSILNEIFASATDSRPTQKLPSDE-QNMDQSNELTEEQRARMEANRLKAMEXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQA 290

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BLAST of C09p75940.1_BnaDARv10-RA vs. GenBank_protein
Match: VDC64746.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 478 bits (1229), Expect = 2.000e-168
Identity = 273/292 (93.49%), Postives = 279/292 (95.55%), Query Frame = 0

Query:    1 MESAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPSSQIPNNESQRSFPKSGNPAAAGPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEVVSDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDDQGDVDMDQPSNGEENVPSKKTVDADTNADAFQDSMLNEIFDSATDSRPTQKLPSDEEQNMDQSSELTEEQRARMEANRLKAXXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQA 292
            MESAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPSSQ PNN+SQRSFPKSGN  AAGPV PKATKARVPRPKLTPE LLSEDGLGYVLRHFPRSFKYRGRGKEVVSDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLY+KQE+NAAHSDDQGDVD+DQPS  EEN+PSKKTVDADTNADAFQDSMLNEIFDSATDSRPTQKLPSDE QNMDQS+ELTEEQRARMEANRLKA     XXXXXXXXXXXXXXXXXXXXXKARLEPNQA
Sbjct:    1 MESAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPSSQTPNNDSQRSFPKSGN--AAGPV-PKATKARVPRPKLTPEMLLSEDGLGYVLRHFPRSFKYRGRGKEVVSDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYEKQEDNAAHSDDQGDVDLDQPSYDEENIPSKKTVDADTNADAFQDSMLNEIFDSATDSRPTQKLPSDE-QNMDQSNELTEEQRARMEANRLKAVERAQXXXXXXXXXXXXXXXXXXXXXKARLEPNQA 288

[Close]

BLAST of C09p75940.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_009147317.1 (TIMELESS-interacting protein [Brassica rapa] >XP_013750905.1 TIMELESS-interacting protein-like [Brassica napus] >XP_013750925.1 TIMELESS-interacting protein [Brassica napus] >RID64635.1 hypothetical protein BRARA_E03557 [Brassica rapa] >CDY51532.1 BnaA05g33320D [Brassica napus])

HSP 1 Score: 473 bits (1216), Expect = 1.910e-166
Identity = 276/292 (94.52%), Postives = 281/292 (96.23%), Query Frame = 0

Query:    1 MESAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPSSQIPNNESQRSFPKSGNPAAAGPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEVVSDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDDQGDVDMDQPSNGEENVPSKKTVDADTNADAFQDSMLNEIFDSATDSRPTQKLPSDEEQNMDQSSELTEEQRARMEANRLKAXXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQA 292
            M+SAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPS QIPN ++QRSFPKSGN AAAGPV PKATKARVPRPKLTPE LLSEDGLGYVLRHFPRSFKYRGRGKEV SDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDDQGDVDMDQPS  EEN+PSKKTVDADTNADAFQDSMLNEIFDSATDSRPTQKLPSDE QNMDQS+ELTEEQRARMEANRLKA  XXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQA
Sbjct:    1 MDSAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPS-QIPNGDAQRSFPKSGNSAAAGPV-PKATKARVPRPKLTPEMLLSEDGLGYVLRHFPRSFKYRGRGKEV-SDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDDQGDVDMDQPSYDEENIPSKKTVDADTNADAFQDSMLNEIFDSATDSRPTQKLPSDE-QNMDQSNELTEEQRARMEANRLKAMEXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQA 288

[Close]

BLAST of C09p75940.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_006408380.1 (TIMELESS-interacting protein [Eutrema salsugineum] >ESQ49833.1 hypothetical protein EUTSA_v10021242mg [Eutrema salsugineum])

HSP 1 Score: 391 bits (1005), Expect = 3.190e-134
Identity = 238/297 (80.13%), Postives = 256/297 (86.20%), Query Frame = 0

Query:    1 MESAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPSS----QIPNNESQRSFPKSGNPAAAGPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEVVSDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDD-QGDVDMDQPSNGEENVPSKKT-VDADTNADAFQDSMLNEIFDSATDSRPTQKLPSDEEQNMDQSSELTEEQRARMEANRLKAXXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQ 291
            MESAPTGCFKCGRPGHWSRDCPSSAP AG+  PSS    Q PNN  QRSF KSGN  AAG  +PKATK R+ RPKLTP+ LLSEDGLGYVLR+FPRSFKYRGR KEV SDLGNLIR+YSEWHSHLLPYYSFDQFVHKVQQVA+TKRVKICINELRERVASGVDPNKLYDKQEENA  S++ QG+ DMDQPS+ EE++PS+    DADTNADAFQDSMLNEIFD+  DS  + K+PSDE QNMD+SSELTEEQRAR EANRLKA     XXXXXXXXXXXXXXXXXXXXXKARLEPNQ
Sbjct:    1 MESAPTGCFKCGRPGHWSRDCPSSAPVAGNSDPSSTTPTQAPNNAFQRSFAKSGN-TAAGTSVPKATKTRLQRPKLTPDLLLSEDGLGYVLRYFPRSFKYRGRSKEV-SDLGNLIRLYSEWHSHLLPYYSFDQFVHKVQQVAATKRVKICINELRERVASGVDPNKLYDKQEENAVPSNNNQGNTDMDQPSHDEEDIPSQSVDADADTNADAFQDSMLNEIFDNGMDSTHSSKIPSDE-QNMDKSSELTEEQRARTEANRLKAVERAQXXXXXXXXXXXXXXXXXXXXXKARLEPNQ 294

[Close]

BLAST of C09p75940.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_018493197.1 (PREDICTED: TIMELESS-interacting protein [Raphanus sativus])

HSP 1 Score: 382 bits (980), Expect = 2.410e-130
Identity = 246/302 (81.46%), Postives = 257/302 (85.10%), Query Frame = 0

Query:    1 MESAPTGCFKCGRPGHWSRDCPSSAPAAG-DPAPSS-QIPNNESQRSFPKSGNPAAA---GPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEVVSDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDDQGDVD--MDQPSNGEENVPSKKTVDADTNADAFQDSMLNEIFD----SATDSRPTQKLPSDEEQNMDQSSELTEEQRARMEANRLKAXXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQ 291
            MESAPTGCFKCGRPGHWSRDCPSSAP AG +PAPSS Q PNN+SQRSFPKSGN AAA   GPV PKATKARV RPKLTPE LLSEDGLGYVLRHFPRSFKYRGRGKEV SDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVA+TKRVKICINELRERVASGVDPNKLY+KQE+NA  SDDQGDVD  MDQP + EEN+P KK VDAD                    +ATDSRP QKLPS E++ MDQ +ELTEEQRARMEANRLK XXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQ
Sbjct:    1 MESAPTGCFKCGRPGHWSRDCPSSAPVAGGNPAPSSSQTPNNDSQRSFPKSGNSAAAAAGGPV-PKATKARVQRPKLTPEMLLSEDGLGYVLRHFPRSFKYRGRGKEV-SDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVAATKRVKICINELRERVASGVDPNKLYEKQEDNALLSDDQGDVDVDMDQPRSDEENIPPKKRVDADVXXXXXXXXXXXXXXXXXXXNATDSRPAQKLPSVEKE-MDQGNELTEEQRARMEANRLKXXXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQ 299

[Close]

BLAST of C09p75940.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_020889330.1 (TIMELESS-interacting protein [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 380 bits (977), Expect = 4.850e-130
Identity = 236/298 (79.19%), Postives = 254/298 (85.23%), Query Frame = 0

Query:    1 MESAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPSS-----QIPNNESQRSFPKSGNPAAAGPV--LPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEVVSDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDDQGDVDMDQPSNGEENVPSKKTVDADTNADAFQDSMLNEIFDSATDSRPTQKLPSDEEQNMDQSSELTEEQRARMEANRLKAXXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQ 291
            MESAPTGCFKCGRPGHWSRDCPSSAP AG+ + SS     QIPNNE QRS  KSGNPAA   +  +PK TK RV RPKLTPE LLSEDGLGYVLR+FP+SFKYRGRGKEV SDLGNLIR+YSEWHSHLLPYYSFD FVHKVQQVASTKRVK CINELRERVASGVDPNKLY+K EEN    DDQG++DMDQP   EEN+PSK + DADTNADAF+DSMLNEIFDSA+      +LPSDE Q +D+SSELTEEQRARMEANRLKA  XXXXXXXXXXXXXXXXXXXXXXX KARL+PNQ
Sbjct:    1 MESAPTGCFKCGRPGHWSRDCPSSAPVAGNNSVSSSSGPSQIPNNEFQRSSNKSGNPAAGTSIAPVPKVTKTRVQRPKLTPELLLSEDGLGYVLRYFPKSFKYRGRGKEV-SDLGNLIRLYSEWHSHLLPYYSFDHFVHKVQQVASTKRVKNCINELRERVASGVDPNKLYEKPEENTGPYDDQGNLDMDQPGQEEENIPSK-SADADTNADAFEDSMLNEIFDSAS------QLPSDE-QILDKSSELTEEQRARMEANRLKAMEXXXXXXXXXXXXXXXXXXXXXXXAKARLQPNQ 289

[Close]

BLAST of C09p75940.1_BnaDARv10-RA vs. GenBank_protein
Match: VVA96257.1 (unnamed protein product [Arabis nemorensis])

HSP 1 Score: 379 bits (973), Expect = 3.810e-129
Identity = 235/306 (76.80%), Postives = 249/306 (81.37%), Query Frame = 0

Query:    1 MESAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPSS-----QIPNNESQRSFPKSGNPAAA---GPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEV----VSDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDDQGDVDMDQPSNGEENVPSKKTVDADTNADA---FQDSMLNEIFDSATDSRPTQKLPSDEEQNMDQSSELTEEQRARMEANRLKAXXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQ 291
            MESAPTGCFKCGRPGHWSRDCPSSAP AG+ APSS     Q PNNE QRS  KSGNPA     GPV PKATK RV RPKLTP+ LLSEDGLGYVLR+FP+SFKYRGRGKE     VSDLGNLIR+YSEWHSHLLPY+SFDQFVHKVQQVA+TKRVKICINELRERVASGVDPNKLY+KQEEN   SDDQG+VDMD+PS+ EEN+PSK              FQDSMLNEIF +ATDS  T KLPSD  QN+D SSELTEEQRARMEANRLKA      XXXXXXXXXXXXXXXXXXXX ARLEPNQ
Sbjct:    1 MESAPTGCFKCGRPGHWSRDCPSSAPVAGNSAPSSSSAPSQTPNNEFQRSSAKSGNPATGKSIGPV-PKATKTRVQRPKLTPDLLLSEDGLGYVLRYFPKSFKYRGRGKEASRFPVSDLGNLIRLYSEWHSHLLPYFSFDQFVHKVQQVATTKRVKICINELRERVASGVDPNKLYEKQEENDVPSDDQGNVDMDEPSHEEENIPSKSVXXXXXXXXXXXXFQDSMLNEIFGNATDSSHTSKLPSDG-QNIDTSSELTEEQRARMEANRLKAMERAKNXXXXXXXXXXXXXXXXXXXXXARLEPNQ 304

The following BLAST results are available for this feature:

BLAST of C09p75940.1_BnaDARv10-RA vs. GenBank_protein

BLAST of C09p75940.1_BnaDARv10-RA vs. GenBank_protein
Analysis Date: 2021-04-17 (Diamond on Darmor-bzh OGS10 v10 vs NR)
Total hits: 20

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POSITION

0


Match Name	E-value	Identity	Description
VDD47516.1	4.370e-183	100.00	unnamed protein product, partial [Brassica olerace...	[more]
CDY28711.1	7.170e-181	99.66	BnaCnng05970D [Brassica napus]	[more]
KAF3609955.1	9.410e-171	94.59	hypothetical protein DY000_02051621 [Brassica cret...	[more]
XP_013587447.1	4.530e-170	94.86	PREDICTED: TIMELESS-interacting protein [Brassica ...	[more]
VDC64746.1	2.000e-168	93.49	unnamed protein product [Brassica rapa]	[more]
XP_009147317.1	1.910e-166	94.52	TIMELESS-interacting protein [Brassica rapa] >XP_0...	[more]
XP_006408380.1	3.190e-134	80.13	TIMELESS-interacting protein [Eutrema salsugineum]...	[more]
XP_018493197.1	2.410e-130	81.46	PREDICTED: TIMELESS-interacting protein [Raphanus ...	[more]
XP_020889330.1	4.850e-130	79.19	TIMELESS-interacting protein [Arabidopsis lyrata s...	[more]
VVA96257.1	3.810e-129	76.80	unnamed protein product [Arabis nemorensis]	[more]

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GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006974	cellular response to DNA damage stimulus
biological_process	GO:0000076	DNA replication checkpoint
biological_process	GO:0043111	replication fork arrest
biological_process	GO:0048478	replication fork protection
cellular_component	GO:0031298	replication fork protection complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding

InterPro

Analysis Name: InterProScan on Darmor-bzh OGS10 v10
Date Performed: 2021-04-17

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POSITION

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 247..283
None	No IPR available	GENE3D	4.10.60.10		coord: 3..76 e-value: 2.3E-9 score: 39.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 217..236
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 217..253
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..200
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..49
None	No IPR available	PANTHER	PTHR13220:SF11	TIMELESS-INTERACTING PROTEIN	coord: 1..262
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 7..23 e-value: 4.5E-6 score: 36.2
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 7..23 e-value: 4.8E-8 score: 32.8
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 8..23 score: 11.301
IPR012923	Chromosome segregation in meiosis protein 3	PFAM	PF07962	Swi3	coord: 71..153 e-value: 1.5E-22 score: 79.4
IPR040038	TIPIN/Csm3/Swi3	PANTHER	PTHR13220	TIMELESS INTERACTING-RELATED	coord: 1..262
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 5..26

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C09_BnaDARv10	contig	C09_BnaDARv10:66325263..66326709 + View in Apollo

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on Darmor-bzh OGS10 v10	2021-04-17
Diamond on Darmor-bzh OGS10 v10 vs NR	2021-04-17
Blast2GO on Darmor-bzh OGS10 v10	2021-04-17
Darmor-bzh OGS10 v10	2020-07-22

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
C09p75940.1_BnaDARv10-RA	C09p75940.1_BnaDARv10-RA	Brassica napus	mRNA	C09_BnaDARv10 66325212..66326803 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>C09p75940.1_BnaDARv10-PA ID=C09p75940.1_BnaDARv10-PA|Name=C09p75940.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=293bp
MESAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPSSQIPNNESQRSFPKSG
NPAAAGPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRG
KEVVSDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINEL
RERVASGVDPNKLYDKQEENAAHSDDQGDVDMDQPSNGEENVPSKKTVDA
DTNADAFQDSMLNEIFDSATDSRPTQKLPSDEEQNMDQSSELTEEQRARM
EANRLKAMERAQNISEEQRLRMEANRLKALERAKARLEPNQA.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036875	Znf_CCHC_sf
IPR040038	TIPIN/Csm3/Swi3
IPR012923	Csm3
IPR001878	Znf_CCHC

Vocabulary: **Biological Process**
Term	Definition
GO:0006974	cellular response to DNA damage stimulus
GO:0043111	replication fork arrest
GO:0048478	replication fork protection
GO:0000076	DNA replication checkpoint

Vocabulary: **Cellular Component**
Term	Definition
GO:0031298	replication fork protection complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0003677	DNA binding

Orthology

View orthology data for C09p75940.1_BnaDARv10-PA

Metabolic Model

View data from metabolic model for C09p75940.1_BnaDARv10-PA