C09p75940.1_BnaDARv10-PA (polypeptide) Brassica napus

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameC09p75940.1_BnaDARv10-RA
Unique NameC09p75940.1_BnaDARv10-PA
Typepolypeptide
OrganismBrassica napus (cv. Darmor-bzh, rapeseed)
Sequence length293
Homology
BLAST of C09p75940.1_BnaDARv10-RA vs. GenBank_protein
Match: VDD47516.1 (unnamed protein product, partial [Brassica oleracea])

HSP 1 Score: 515 bits (1327), Expect = 4.370e-183
Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 0
Query:    1 MESAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPSSQIPNNESQRSFPKSGNPAAAGPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEVVSDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDDQGDVDMDQPSNGEENVPSKKTVDADTNADAFQDSMLNEIFDSATDSRPTQKLPSDEEQNMDQSSELTEEQRARMEANRLKAXXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQA 292
            MESAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPSSQIPNNESQRSFPKSGNPAAAGPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEVVSDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDDQGDVDMDQPSNGEENVPSKKTVDADTNADAFQDSMLNEIFDSATDSRPTQKLPSDEEQNMDQSSELTEEQRARMEANRLKAXXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQA
Sbjct:   14 MESAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPSSQIPNNESQRSFPKSGNPAAAGPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEVVSDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDDQGDVDMDQPSNGEENVPSKKTVDADTNADAFQDSMLNEIFDSATDSRPTQKLPSDEEQNMDQSSELTEEQRARMEANRLKAXXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQA 305          
BLAST of C09p75940.1_BnaDARv10-RA vs. GenBank_protein
Match: CDY28711.1 (BnaCnng05970D [Brassica napus])

HSP 1 Score: 509 bits (1311), Expect = 7.170e-181
Identity = 291/292 (99.66%), Postives = 291/292 (99.66%), Query Frame = 0
Query:    1 MESAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPSSQIPNNESQRSFPKSGNPAAAGPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEVVSDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDDQGDVDMDQPSNGEENVPSKKTVDADTNADAFQDSMLNEIFDSATDSRPTQKLPSDEEQNMDQSSELTEEQRARMEANRLKAXXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQA 292
            MESAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPSSQIPNNESQRSFPKSGNPAAAGPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEV SDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDDQGDVDMDQPSNGEENVPSKKTVDADTNADAFQDSMLNEIFDSATDSRPTQKLPSDEEQNMDQSSELTEEQRARMEANRLKAXXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQA
Sbjct:    1 MESAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPSSQIPNNESQRSFPKSGNPAAAGPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEV-SDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDDQGDVDMDQPSNGEENVPSKKTVDADTNADAFQDSMLNEIFDSATDSRPTQKLPSDEEQNMDQSSELTEEQRARMEANRLKAXXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQA 291          
BLAST of C09p75940.1_BnaDARv10-RA vs. GenBank_protein
Match: KAF3609955.1 (hypothetical protein DY000_02051621 [Brassica cretica])

HSP 1 Score: 484 bits (1245), Expect = 9.410e-171
Identity = 280/296 (94.59%), Postives = 284/296 (95.95%), Query Frame = 0
Query:    1 MESAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPSSQIPNNESQRSFPKSGNPAAAGPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEVVSDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDDQGDVDMDQPSNGEENVPSKKTVDA----DTNADAFQDSMLNEIFDSATDSRPTQKLPSDEEQNMDQSSELTEEQRARMEANRLKAXXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQA 292
            MESAPTGCFKCGRPGHWSRDCPSSAPA GDPAPSSQ PNN+SQRSFPKSGNPAA GPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEV SDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQV STKRVKICINELRERVASGVDPNKLY+KQEENAAHSDDQGDVDMDQPS  EEN+PSKKTVDA    DTNADAFQDSMLNEIF SATDSRPTQKLPSDEEQNMDQS+ELTEEQRARMEANRLKAXXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQA
Sbjct:    1 MESAPTGCFKCGRPGHWSRDCPSSAPAGGDPAPSSQTPNNDSQRSFPKSGNPAAGGPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEV-SDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVVSTKRVKICINELRERVASGVDPNKLYEKQEENAAHSDDQGDVDMDQPSYDEENIPSKKTVDAEADVDTNADAFQDSMLNEIFASATDSRPTQKLPSDEEQNMDQSNELTEEQRARMEANRLKAXXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQA 295          
BLAST of C09p75940.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_013587447.1 (PREDICTED: TIMELESS-interacting protein [Brassica oleracea var. oleracea])

HSP 1 Score: 482 bits (1240), Expect = 4.530e-170
Identity = 277/292 (94.86%), Postives = 281/292 (96.23%), Query Frame = 0
Query:    1 MESAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPSSQIPNNESQRSFPKSGNPAAAGPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEVVSDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDDQGDVDMDQPSNGEENVPSKKTVDADTNADAFQDSMLNEIFDSATDSRPTQKLPSDEEQNMDQSSELTEEQRARMEANRLKAXXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQA 292
            MESAPTGCFKCGRPGHWSRDCPSSAPA GDPAPSSQ PNN+SQRSFPKSGNPAA GPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEV SDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDDQ DVDMDQPS  EEN+PSKKTVDADTNADAFQDS+LNEIF SATDSRPTQKLPSDE QNMDQS+ELTEEQRARMEANRLKA  XXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQA
Sbjct:    1 MESAPTGCFKCGRPGHWSRDCPSSAPAGGDPAPSSQTPNNDSQRSFPKSGNPAAGGPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEV-SDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDDQRDVDMDQPSYDEENIPSKKTVDADTNADAFQDSILNEIFASATDSRPTQKLPSDE-QNMDQSNELTEEQRARMEANRLKAMEXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQA 290          
BLAST of C09p75940.1_BnaDARv10-RA vs. GenBank_protein
Match: VDC64746.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 478 bits (1229), Expect = 2.000e-168
Identity = 273/292 (93.49%), Postives = 279/292 (95.55%), Query Frame = 0
Query:    1 MESAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPSSQIPNNESQRSFPKSGNPAAAGPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEVVSDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDDQGDVDMDQPSNGEENVPSKKTVDADTNADAFQDSMLNEIFDSATDSRPTQKLPSDEEQNMDQSSELTEEQRARMEANRLKAXXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQA 292
            MESAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPSSQ PNN+SQRSFPKSGN  AAGPV PKATKARVPRPKLTPE LLSEDGLGYVLRHFPRSFKYRGRGKEVVSDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLY+KQE+NAAHSDDQGDVD+DQPS  EEN+PSKKTVDADTNADAFQDSMLNEIFDSATDSRPTQKLPSDE QNMDQS+ELTEEQRARMEANRLKA     XXXXXXXXXXXXXXXXXXXXXKARLEPNQA
Sbjct:    1 MESAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPSSQTPNNDSQRSFPKSGN--AAGPV-PKATKARVPRPKLTPEMLLSEDGLGYVLRHFPRSFKYRGRGKEVVSDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYEKQEDNAAHSDDQGDVDLDQPSYDEENIPSKKTVDADTNADAFQDSMLNEIFDSATDSRPTQKLPSDE-QNMDQSNELTEEQRARMEANRLKAVERAQXXXXXXXXXXXXXXXXXXXXXKARLEPNQA 288          
BLAST of C09p75940.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_009147317.1 (TIMELESS-interacting protein [Brassica rapa] >XP_013750905.1 TIMELESS-interacting protein-like [Brassica napus] >XP_013750925.1 TIMELESS-interacting protein [Brassica napus] >RID64635.1 hypothetical protein BRARA_E03557 [Brassica rapa] >CDY51532.1 BnaA05g33320D [Brassica napus])

HSP 1 Score: 473 bits (1216), Expect = 1.910e-166
Identity = 276/292 (94.52%), Postives = 281/292 (96.23%), Query Frame = 0
Query:    1 MESAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPSSQIPNNESQRSFPKSGNPAAAGPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEVVSDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDDQGDVDMDQPSNGEENVPSKKTVDADTNADAFQDSMLNEIFDSATDSRPTQKLPSDEEQNMDQSSELTEEQRARMEANRLKAXXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQA 292
            M+SAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPS QIPN ++QRSFPKSGN AAAGPV PKATKARVPRPKLTPE LLSEDGLGYVLRHFPRSFKYRGRGKEV SDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDDQGDVDMDQPS  EEN+PSKKTVDADTNADAFQDSMLNEIFDSATDSRPTQKLPSDE QNMDQS+ELTEEQRARMEANRLKA  XXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQA
Sbjct:    1 MDSAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPS-QIPNGDAQRSFPKSGNSAAAGPV-PKATKARVPRPKLTPEMLLSEDGLGYVLRHFPRSFKYRGRGKEV-SDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDDQGDVDMDQPSYDEENIPSKKTVDADTNADAFQDSMLNEIFDSATDSRPTQKLPSDE-QNMDQSNELTEEQRARMEANRLKAMEXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQA 288          
BLAST of C09p75940.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_006408380.1 (TIMELESS-interacting protein [Eutrema salsugineum] >ESQ49833.1 hypothetical protein EUTSA_v10021242mg [Eutrema salsugineum])

HSP 1 Score: 391 bits (1005), Expect = 3.190e-134
Identity = 238/297 (80.13%), Postives = 256/297 (86.20%), Query Frame = 0
Query:    1 MESAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPSS----QIPNNESQRSFPKSGNPAAAGPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEVVSDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDD-QGDVDMDQPSNGEENVPSKKT-VDADTNADAFQDSMLNEIFDSATDSRPTQKLPSDEEQNMDQSSELTEEQRARMEANRLKAXXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQ 291
            MESAPTGCFKCGRPGHWSRDCPSSAP AG+  PSS    Q PNN  QRSF KSGN  AAG  +PKATK R+ RPKLTP+ LLSEDGLGYVLR+FPRSFKYRGR KEV SDLGNLIR+YSEWHSHLLPYYSFDQFVHKVQQVA+TKRVKICINELRERVASGVDPNKLYDKQEENA  S++ QG+ DMDQPS+ EE++PS+    DADTNADAFQDSMLNEIFD+  DS  + K+PSDE QNMD+SSELTEEQRAR EANRLKA     XXXXXXXXXXXXXXXXXXXXXKARLEPNQ
Sbjct:    1 MESAPTGCFKCGRPGHWSRDCPSSAPVAGNSDPSSTTPTQAPNNAFQRSFAKSGN-TAAGTSVPKATKTRLQRPKLTPDLLLSEDGLGYVLRYFPRSFKYRGRSKEV-SDLGNLIRLYSEWHSHLLPYYSFDQFVHKVQQVAATKRVKICINELRERVASGVDPNKLYDKQEENAVPSNNNQGNTDMDQPSHDEEDIPSQSVDADADTNADAFQDSMLNEIFDNGMDSTHSSKIPSDE-QNMDKSSELTEEQRARTEANRLKAVERAQXXXXXXXXXXXXXXXXXXXXXKARLEPNQ 294          
BLAST of C09p75940.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_018493197.1 (PREDICTED: TIMELESS-interacting protein [Raphanus sativus])

HSP 1 Score: 382 bits (980), Expect = 2.410e-130
Identity = 246/302 (81.46%), Postives = 257/302 (85.10%), Query Frame = 0
Query:    1 MESAPTGCFKCGRPGHWSRDCPSSAPAAG-DPAPSS-QIPNNESQRSFPKSGNPAAA---GPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEVVSDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDDQGDVD--MDQPSNGEENVPSKKTVDADTNADAFQDSMLNEIFD----SATDSRPTQKLPSDEEQNMDQSSELTEEQRARMEANRLKAXXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQ 291
            MESAPTGCFKCGRPGHWSRDCPSSAP AG +PAPSS Q PNN+SQRSFPKSGN AAA   GPV PKATKARV RPKLTPE LLSEDGLGYVLRHFPRSFKYRGRGKEV SDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVA+TKRVKICINELRERVASGVDPNKLY+KQE+NA  SDDQGDVD  MDQP + EEN+P KK VDAD                    +ATDSRP QKLPS E++ MDQ +ELTEEQRARMEANRLK XXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQ
Sbjct:    1 MESAPTGCFKCGRPGHWSRDCPSSAPVAGGNPAPSSSQTPNNDSQRSFPKSGNSAAAAAGGPV-PKATKARVQRPKLTPEMLLSEDGLGYVLRHFPRSFKYRGRGKEV-SDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVAATKRVKICINELRERVASGVDPNKLYEKQEDNALLSDDQGDVDVDMDQPRSDEENIPPKKRVDADVXXXXXXXXXXXXXXXXXXXNATDSRPAQKLPSVEKE-MDQGNELTEEQRARMEANRLKXXXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQ 299          
BLAST of C09p75940.1_BnaDARv10-RA vs. GenBank_protein
Match: XP_020889330.1 (TIMELESS-interacting protein [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 380 bits (977), Expect = 4.850e-130
Identity = 236/298 (79.19%), Postives = 254/298 (85.23%), Query Frame = 0
Query:    1 MESAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPSS-----QIPNNESQRSFPKSGNPAAAGPV--LPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEVVSDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDDQGDVDMDQPSNGEENVPSKKTVDADTNADAFQDSMLNEIFDSATDSRPTQKLPSDEEQNMDQSSELTEEQRARMEANRLKAXXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQ 291
            MESAPTGCFKCGRPGHWSRDCPSSAP AG+ + SS     QIPNNE QRS  KSGNPAA   +  +PK TK RV RPKLTPE LLSEDGLGYVLR+FP+SFKYRGRGKEV SDLGNLIR+YSEWHSHLLPYYSFD FVHKVQQVASTKRVK CINELRERVASGVDPNKLY+K EEN    DDQG++DMDQP   EEN+PSK + DADTNADAF+DSMLNEIFDSA+      +LPSDE Q +D+SSELTEEQRARMEANRLKA  XXXXXXXXXXXXXXXXXXXXXXX KARL+PNQ
Sbjct:    1 MESAPTGCFKCGRPGHWSRDCPSSAPVAGNNSVSSSSGPSQIPNNEFQRSSNKSGNPAAGTSIAPVPKVTKTRVQRPKLTPELLLSEDGLGYVLRYFPKSFKYRGRGKEV-SDLGNLIRLYSEWHSHLLPYYSFDHFVHKVQQVASTKRVKNCINELRERVASGVDPNKLYEKPEENTGPYDDQGNLDMDQPGQEEENIPSK-SADADTNADAFEDSMLNEIFDSAS------QLPSDE-QILDKSSELTEEQRARMEANRLKAMEXXXXXXXXXXXXXXXXXXXXXXXAKARLQPNQ 289          
BLAST of C09p75940.1_BnaDARv10-RA vs. GenBank_protein
Match: VVA96257.1 (unnamed protein product [Arabis nemorensis])

HSP 1 Score: 379 bits (973), Expect = 3.810e-129
Identity = 235/306 (76.80%), Postives = 249/306 (81.37%), Query Frame = 0
Query:    1 MESAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPSS-----QIPNNESQRSFPKSGNPAAA---GPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRGKEV----VSDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINELRERVASGVDPNKLYDKQEENAAHSDDQGDVDMDQPSNGEENVPSKKTVDADTNADA---FQDSMLNEIFDSATDSRPTQKLPSDEEQNMDQSSELTEEQRARMEANRLKAXXXXXXXXXXXXXXXXXXXXXXXXXXKARLEPNQ 291
            MESAPTGCFKCGRPGHWSRDCPSSAP AG+ APSS     Q PNNE QRS  KSGNPA     GPV PKATK RV RPKLTP+ LLSEDGLGYVLR+FP+SFKYRGRGKE     VSDLGNLIR+YSEWHSHLLPY+SFDQFVHKVQQVA+TKRVKICINELRERVASGVDPNKLY+KQEEN   SDDQG+VDMD+PS+ EEN+PSK              FQDSMLNEIF +ATDS  T KLPSD  QN+D SSELTEEQRARMEANRLKA      XXXXXXXXXXXXXXXXXXXX ARLEPNQ
Sbjct:    1 MESAPTGCFKCGRPGHWSRDCPSSAPVAGNSAPSSSSAPSQTPNNEFQRSSAKSGNPATGKSIGPV-PKATKTRVQRPKLTPDLLLSEDGLGYVLRYFPKSFKYRGRGKEASRFPVSDLGNLIRLYSEWHSHLLPYFSFDQFVHKVQQVATTKRVKICINELRERVASGVDPNKLYEKQEENDVPSDDQGNVDMDEPSHEEENIPSKSVXXXXXXXXXXXXFQDSMLNEIFGNATDSSHTSKLPSDG-QNIDTSSELTEEQRARMEANRLKAMERAKNXXXXXXXXXXXXXXXXXXXXXARLEPNQ 304          
The following BLAST results are available for this feature:
BLAST of C09p75940.1_BnaDARv10-RA vs. GenBank_protein
Analysis Date: 2021-04-17 (Diamond on Darmor-bzh OGS10 v10 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
VDD47516.14.370e-183100.00unnamed protein product, partial [Brassica olerace... [more]
CDY28711.17.170e-18199.66BnaCnng05970D [Brassica napus][more]
KAF3609955.19.410e-17194.59hypothetical protein DY000_02051621 [Brassica cret... [more]
XP_013587447.14.530e-17094.86PREDICTED: TIMELESS-interacting protein [Brassica ... [more]
VDC64746.12.000e-16893.49unnamed protein product [Brassica rapa][more]
XP_009147317.11.910e-16694.52TIMELESS-interacting protein [Brassica rapa] >XP_0... [more]
XP_006408380.13.190e-13480.13TIMELESS-interacting protein [Eutrema salsugineum]... [more]
XP_018493197.12.410e-13081.46PREDICTED: TIMELESS-interacting protein [Raphanus ... [more]
XP_020889330.14.850e-13079.19TIMELESS-interacting protein [Arabidopsis lyrata s... [more]
VVA96257.13.810e-12976.80unnamed protein product [Arabis nemorensis][more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006974 cellular response to DNA damage stimulus
biological_process GO:0000076 DNA replication checkpoint
biological_process GO:0043111 replication fork arrest
biological_process GO:0048478 replication fork protection
cellular_component GO:0031298 replication fork protection complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterProScan on Darmor-bzh OGS10 v10
Date Performed: 2021-04-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 247..283
NoneNo IPR availableGENE3D4.10.60.10coord: 3..76
e-value: 2.3E-9
score: 39.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 217..236
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 217..253
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 168..200
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..49
NoneNo IPR availablePANTHERPTHR13220:SF11TIMELESS-INTERACTING PROTEINcoord: 1..262
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 7..23
e-value: 4.5E-6
score: 36.2
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 7..23
e-value: 4.8E-8
score: 32.8
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 8..23
score: 11.301
IPR012923Chromosome segregation in meiosis protein 3PFAMPF07962Swi3coord: 71..153
e-value: 1.5E-22
score: 79.4
IPR040038TIPIN/Csm3/Swi3PANTHERPTHR13220TIMELESS INTERACTING-RELATEDcoord: 1..262
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 5..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C09_BnaDARv10contigC09_BnaDARv10:66325263..66326709 +    View in Apollo
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on Darmor-bzh OGS10 v102021-04-17
Diamond on Darmor-bzh OGS10 v10 vs NR2021-04-17
Blast2GO on Darmor-bzh OGS10 v102021-04-17
Darmor-bzh OGS10 v102020-07-22
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
C09p75940.1_BnaDARv10-RAC09p75940.1_BnaDARv10-RABrassica napusmRNAC09_BnaDARv10 66325212..66326803 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>C09p75940.1_BnaDARv10-PA ID=C09p75940.1_BnaDARv10-PA|Name=C09p75940.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=293bp
MESAPTGCFKCGRPGHWSRDCPSSAPAAGDPAPSSQIPNNESQRSFPKSG
NPAAAGPVLPKATKARVPRPKLTPETLLSEDGLGYVLRHFPRSFKYRGRG
KEVVSDLGNLIRMYSEWHSHLLPYYSFDQFVHKVQQVASTKRVKICINEL
RERVASGVDPNKLYDKQEENAAHSDDQGDVDMDQPSNGEENVPSKKTVDA
DTNADAFQDSMLNEIFDSATDSRPTQKLPSDEEQNMDQSSELTEEQRARM
EANRLKAMERAQNISEEQRLRMEANRLKALERAKARLEPNQA.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036875Znf_CCHC_sf
IPR040038TIPIN/Csm3/Swi3
IPR012923Csm3
IPR001878Znf_CCHC
Vocabulary: Biological Process
TermDefinition
GO:0006974cellular response to DNA damage stimulus
GO:0043111replication fork arrest
GO:0048478replication fork protection
GO:0000076DNA replication checkpoint
Vocabulary: Cellular Component
TermDefinition
GO:0031298replication fork protection complex
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003677DNA binding