Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 985 |
| Exons | 7 |
| Cds size | 789 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| A01p03830.1_BnaDARv10 | A01p03830.1_BnaDARv10 | Brassica napus | gene | A01_BnaDARv10 1777186..1778667 - |
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340469.053189-five_prime_UTR-A01_BnaDARv10:1777185..1777326 | 1626340469.053189-five_prime_UTR-A01_BnaDARv10:1777185..1777326 | Brassica napus | five_prime_UTR | A01_BnaDARv10 1777186..1777326 - |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| A01p03830.1_BnaDARv10_exon1 | A01p03830.1_BnaDARv10_exon1 | Brassica napus | exon | A01_BnaDARv10 1777186..1777425 - |
| A01p03830.1_BnaDARv10_exon2 | A01p03830.1_BnaDARv10_exon2 | Brassica napus | exon | A01_BnaDARv10 1777510..1777710 - |
| A01p03830.1_BnaDARv10_exon3 | A01p03830.1_BnaDARv10_exon3 | Brassica napus | exon | A01_BnaDARv10 1777790..1777975 - |
| A01p03830.1_BnaDARv10_exon4 | A01p03830.1_BnaDARv10_exon4 | Brassica napus | exon | A01_BnaDARv10 1778060..1778197 - |
| A01p03830.1_BnaDARv10_exon5 | A01p03830.1_BnaDARv10_exon5 | Brassica napus | exon | A01_BnaDARv10 1778289..1778394 - |
| A01p03830.1_BnaDARv10_exon6 | A01p03830.1_BnaDARv10_exon6 | Brassica napus | exon | A01_BnaDARv10 1778493..1778540 - |
| A01p03830.1_BnaDARv10_exon7 | A01p03830.1_BnaDARv10_exon7 | Brassica napus | exon | A01_BnaDARv10 1778602..1778667 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340469.0628934-CDS-A01_BnaDARv10:1777326..1777425 | 1626340469.0628934-CDS-A01_BnaDARv10:1777326..1777425 | Brassica napus | CDS | A01_BnaDARv10 1777327..1777425 - |
| 1626340469.0699081-CDS-A01_BnaDARv10:1777509..1777710 | 1626340469.0699081-CDS-A01_BnaDARv10:1777509..1777710 | Brassica napus | CDS | A01_BnaDARv10 1777510..1777710 - |
| 1626340469.077047-CDS-A01_BnaDARv10:1777789..1777975 | 1626340469.077047-CDS-A01_BnaDARv10:1777789..1777975 | Brassica napus | CDS | A01_BnaDARv10 1777790..1777975 - |
| 1626340469.084189-CDS-A01_BnaDARv10:1778059..1778197 | 1626340469.084189-CDS-A01_BnaDARv10:1778059..1778197 | Brassica napus | CDS | A01_BnaDARv10 1778060..1778197 - |
| 1626340469.0908542-CDS-A01_BnaDARv10:1778288..1778394 | 1626340469.0908542-CDS-A01_BnaDARv10:1778288..1778394 | Brassica napus | CDS | A01_BnaDARv10 1778289..1778394 - |
| 1626340469.0972846-CDS-A01_BnaDARv10:1778492..1778540 | 1626340469.0972846-CDS-A01_BnaDARv10:1778492..1778540 | Brassica napus | CDS | A01_BnaDARv10 1778493..1778540 - |
| 1626340469.1037881-CDS-A01_BnaDARv10:1778601..1778612 | 1626340469.1037881-CDS-A01_BnaDARv10:1778601..1778612 | Brassica napus | CDS | A01_BnaDARv10 1778602..1778612 - |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1626340469.1101446-three_prime_UTR-A01_BnaDARv10:1778612..1778667 | 1626340469.1101446-three_prime_UTR-A01_BnaDARv10:1778612..1778667 | Brassica napus | three_prime_UTR | A01_BnaDARv10 1778613..1778667 - |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >A01p03830.1_BnaDARv10-RA ID=A01p03830.1_BnaDARv10-RA|Name=A01p03830.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=985bp|location=Sequence derived from alignment at A01_BnaDARv10:1777186..1778667- (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.
GAAGCCGCTTCTTCTTCATCCTCTAGTCGTCAGCACCTTCTGAAGATCCA
TAACCATGGCTGTTGGGAAGAACAAGAGGATCTCCAAGGGTCGTAAAGGA
GGCAAGAAGAAGATTGTTGATCCTTTCTCCAAGAAGGATTGGTATGACAT
CAAGGCTCCCTCTAACTTCAAACAGAGAAATGTTGGCAAGACTCTTGTTT
CTAGGACTCAGGGTACCAAGATTGCCTCTGAGGGGTTGAAACATAGAGTT
TTTGAGGTTTCACTAGCTGATCTCCAAGGTGATGAGGATCACTCTTACAG
GAAGATTCGTCTCAGAGCTGAAGATGTCCAGGGCAGGAATGTCTTGACCC
AGTTCTGGGGTATGGACTTCACAACGGACAAGCTGAGGTCGTTGGTGAAG
AAGTGGCAGACGTTGATTGAAGCCCATGTCGATGTGAAGACCACTGACAG
CTACACCTTGAGGTTGTTCTGTATTGGTTTCACCAAGAGGCGTGCTAACC
AGGTCAAGCGTACTTGTTATGCTCAGTCCAGCCAAATCCGCCAGATCCGC
AGGAAGATGAGTGAAATCATGGTGAAGGAGGCTTCGTCTTGTGACCTTAA
GGAGCTTGTGGCCAAGTTCATCCCTGAGTCCATCGGGAGAGATATTGAGA
AGGCAGTGCAAAGCATCTACCCGTTGCAGAACGTGTTCATCCGTAAAGTT
AAAATCCTCAAGGCTCCCAAGTTTGACCTTGGAAAGCTCATGGAGGTGCA
TGGAGACTACACAGCAGAGGATGTTGGTGTGAAGGTAGACAGGCCAGCTG
ATGAGGCAACGGCTGAAGAGCCAACTGAAATCATCGGAGCTTAGAGGATT
ATAGATTTGTTTCTTTTTCGTTTGGAAAAAAACTAATGTTTATGTCGCCA
TTTTTGTGGAGTCTCTGTTAAGAGAACTCTGGCGACTGGTTTTGAACACA
GTTTTTTTTTTTTTGTATGGATTCTCCATTTGGTG back to topprotein sequence of A01p03830.1_BnaDARv10-RA >A01p03830.1_BnaDARv10-PA ID=A01p03830.1_BnaDARv10-PA|Name=A01p03830.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=263bp
MAVGKNKRISKGRKGGKKKIVDPFSKKDWYDIKAPSNFKQRNVGKTLVSR
TQGTKIASEGLKHRVFEVSLADLQGDEDHSYRKIRLRAEDVQGRNVLTQF
WGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFCIGFTKRRANQV
KRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPESIGRDIEKA
VQSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDRPADE
ATAEEPTEIIGA. back to topmRNA from alignment at A01_BnaDARv10:1777186..1778667- Legend: exonthree_prime_UTRpolypeptideCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >A01p03830.1_BnaDARv10-RA ID=A01p03830.1_BnaDARv10-RA|Name=A01p03830.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1482bp|location=Sequence derived from alignment at A01_BnaDARv10:1777186..1778667- (Brassica napus)
GAAGCCGCTTCTTCTTCATCCTCTAGTCGTCAGCACCTTCTGAAGATCCA
TAACCATGGCTGTTGGGTATGCTCCTCTACCTCTCTTACCCACCTTACTG
TATCTGAATCTCTCTCTCATTCTATAGGAAGAACAAGAGGATCTCCAAGG
GTCGTAAAGGAGGCAAGAAGAAGATGTAAGTAAAAAAACATTATCATTAT
CCCTCTGATTAAAAAGTTTTCATTTTTTAGTTATGTTTGAGTTTGAGTTA
AAGTTTGTAACTTGATGATGCAGTGTTGATCCTTTCTCCAAGAAGGATTG
GTATGACATCAAGGCTCCCTCTAACTTCAAACAGAGAAATGTTGGCAAGA
CTCTTGTTTCTAGGACTCAGGGTACCAAGGTAATTTACTTTAATATTGAT
AGAGATTAGTCGAGAAAGGAATTAGCTTTTTTGGTTGGTTGCATTGTGAT
TCGTGTGTGTGTGGTTTCAGATTGCCTCTGAGGGGTTGAAACATAGAGTT
TTTGAGGTTTCACTAGCTGATCTCCAAGGTGATGAGGATCACTCTTACAG
GAAGATTCGTCTCAGAGCTGAAGATGTCCAGGGCAGGAATGTCTTGACCC
AGTTCTGGGTATGTTGTAGTAACTTACTATCTTACAAAAGTTTTGATTTT
TTTTTTTGCAAGTAGTTGAACAATGTAAAACATTCTTTGTAGGGTATGGA
CTTCACAACGGACAAGCTGAGGTCGTTGGTGAAGAAGTGGCAGACGTTGA
TTGAAGCCCATGTCGATGTGAAGACCACTGACAGCTACACCTTGAGGTTG
TTCTGTATTGGTTTCACCAAGAGGCGTGCTAACCAGGTCAAGCGTACTTG
TTATGCTCAGTCCAGCCAAATCCGCCAGGTAACGTTAACATTTATCAAAA
CCATATGCTTAAGATGGCTCCTGTTGTTGACATATGGTTTTGTTGGGATT
GTTTTAGATCCGCAGGAAGATGAGTGAAATCATGGTGAAGGAGGCTTCGT
CTTGTGACCTTAAGGAGCTTGTGGCCAAGTTCATCCCTGAGTCCATCGGG
AGAGATATTGAGAAGGCAGTGCAAAGCATCTACCCGTTGCAGAACGTGTT
CATCCGTAAAGTTAAAATCCTCAAGGCTCCCAAGTTTGACCTTGGAAAGC
TCATGGAGGTGAGTATTGATATCACACTAATGTCTTGGTCTTGACTATGA
AGAGAGTTGAATCTTACTTTGTTTTGTTCTGTTTCTTGTTAGGTGCATGG
AGACTACACAGCAGAGGATGTTGGTGTGAAGGTAGACAGGCCAGCTGATG
AGGCAACGGCTGAAGAGCCAACTGAAATCATCGGAGCTTAGAGGATTATA
GATTTGTTTCTTTTTCGTTTGGAAAAAAACTAATGTTTATGTCGCCATTT
TTGTGGAGTCTCTGTTAAGAGAACTCTGGCGACTGGTTTTGAACACAGTT
TTTTTTTTTTTGTATGGATTCTCCATTTGGTG back to topCoding sequence (CDS) from alignment at A01_BnaDARv10:1777186..1778667- >A01p03830.1_BnaDARv10-RA ID=A01p03830.1_BnaDARv10-RA|Name=A01p03830.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=789bp|location=Sequence derived from alignment at A01_BnaDARv10:1777186..1778667- (Brassica napus)
ATGGCTGTTGGGAAGAACAAGAGGATCTCCAAGGGTCGTAAAGGAGGCAA
GAAGAAGATTGTTGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGG
CTCCCTCTAACTTCAAACAGAGAAATGTTGGCAAGACTCTTGTTTCTAGG
ACTCAGGGTACCAAGATTGCCTCTGAGGGGTTGAAACATAGAGTTTTTGA
GGTTTCACTAGCTGATCTCCAAGGTGATGAGGATCACTCTTACAGGAAGA
TTCGTCTCAGAGCTGAAGATGTCCAGGGCAGGAATGTCTTGACCCAGTTC
TGGGGTATGGACTTCACAACGGACAAGCTGAGGTCGTTGGTGAAGAAGTG
GCAGACGTTGATTGAAGCCCATGTCGATGTGAAGACCACTGACAGCTACA
CCTTGAGGTTGTTCTGTATTGGTTTCACCAAGAGGCGTGCTAACCAGGTC
AAGCGTACTTGTTATGCTCAGTCCAGCCAAATCCGCCAGATCCGCAGGAA
GATGAGTGAAATCATGGTGAAGGAGGCTTCGTCTTGTGACCTTAAGGAGC
TTGTGGCCAAGTTCATCCCTGAGTCCATCGGGAGAGATATTGAGAAGGCA
GTGCAAAGCATCTACCCGTTGCAGAACGTGTTCATCCGTAAAGTTAAAAT
CCTCAAGGCTCCCAAGTTTGACCTTGGAAAGCTCATGGAGGTGCATGGAG
ACTACACAGCAGAGGATGTTGGTGTGAAGGTAGACAGGCCAGCTGATGAG
GCAACGGCTGAAGAGCCAACTGAAATCATCGGAGCTTAG back to top
|