A01p03830.1_BnaDARv10-RA (mRNA) Brassica napus

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Stop	1
Start	1
Model size	985
Exons	7
Cds size	789

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
A01p03830.1_BnaDARv10	A01p03830.1_BnaDARv10	Brassica napus	gene	A01_BnaDARv10 1777186..1778667 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
A01p03830.1_BnaDARv10-RA	A01p03830.1_BnaDARv10-PA	Brassica napus	polypeptide	A01_BnaDARv10 1777327..1778612 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1626340469.053189-five_prime_UTR-A01_BnaDARv10:1777185..1777326	1626340469.053189-five_prime_UTR-A01_BnaDARv10:1777185..1777326	Brassica napus	five_prime_UTR	A01_BnaDARv10 1777186..1777326 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
A01p03830.1_BnaDARv10_exon1	A01p03830.1_BnaDARv10_exon1	Brassica napus	exon	A01_BnaDARv10 1777186..1777425 -
A01p03830.1_BnaDARv10_exon2	A01p03830.1_BnaDARv10_exon2	Brassica napus	exon	A01_BnaDARv10 1777510..1777710 -
A01p03830.1_BnaDARv10_exon3	A01p03830.1_BnaDARv10_exon3	Brassica napus	exon	A01_BnaDARv10 1777790..1777975 -
A01p03830.1_BnaDARv10_exon4	A01p03830.1_BnaDARv10_exon4	Brassica napus	exon	A01_BnaDARv10 1778060..1778197 -
A01p03830.1_BnaDARv10_exon5	A01p03830.1_BnaDARv10_exon5	Brassica napus	exon	A01_BnaDARv10 1778289..1778394 -
A01p03830.1_BnaDARv10_exon6	A01p03830.1_BnaDARv10_exon6	Brassica napus	exon	A01_BnaDARv10 1778493..1778540 -
A01p03830.1_BnaDARv10_exon7	A01p03830.1_BnaDARv10_exon7	Brassica napus	exon	A01_BnaDARv10 1778602..1778667 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1626340469.0628934-CDS-A01_BnaDARv10:1777326..1777425	1626340469.0628934-CDS-A01_BnaDARv10:1777326..1777425	Brassica napus	CDS	A01_BnaDARv10 1777327..1777425 -
1626340469.0699081-CDS-A01_BnaDARv10:1777509..1777710	1626340469.0699081-CDS-A01_BnaDARv10:1777509..1777710	Brassica napus	CDS	A01_BnaDARv10 1777510..1777710 -
1626340469.077047-CDS-A01_BnaDARv10:1777789..1777975	1626340469.077047-CDS-A01_BnaDARv10:1777789..1777975	Brassica napus	CDS	A01_BnaDARv10 1777790..1777975 -
1626340469.084189-CDS-A01_BnaDARv10:1778059..1778197	1626340469.084189-CDS-A01_BnaDARv10:1778059..1778197	Brassica napus	CDS	A01_BnaDARv10 1778060..1778197 -
1626340469.0908542-CDS-A01_BnaDARv10:1778288..1778394	1626340469.0908542-CDS-A01_BnaDARv10:1778288..1778394	Brassica napus	CDS	A01_BnaDARv10 1778289..1778394 -
1626340469.0972846-CDS-A01_BnaDARv10:1778492..1778540	1626340469.0972846-CDS-A01_BnaDARv10:1778492..1778540	Brassica napus	CDS	A01_BnaDARv10 1778493..1778540 -
1626340469.1037881-CDS-A01_BnaDARv10:1778601..1778612	1626340469.1037881-CDS-A01_BnaDARv10:1778601..1778612	Brassica napus	CDS	A01_BnaDARv10 1778602..1778612 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1626340469.1101446-three_prime_UTR-A01_BnaDARv10:1778612..1778667	1626340469.1101446-three_prime_UTR-A01_BnaDARv10:1778612..1778667	Brassica napus	three_prime_UTR	A01_BnaDARv10 1778613..1778667 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at A01_BnaDARv10:1777186..1778667-
coding sequence from alignment at A01_BnaDARv10:1777186..1778667-

spliced messenger RNA

>A01p03830.1_BnaDARv10-RA ID=A01p03830.1_BnaDARv10-RA|Name=A01p03830.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=985bp|location=Sequence derived from alignment at A01_BnaDARv10:1777186..1778667- (Brassica napus)|Notes=Excludes all bases but those of type(s): exon.  
GAAGCCGCTTCTTCTTCATCCTCTAGTCGTCAGCACCTTCTGAAGATCCA
TAACCATGGCTGTTGGGAAGAACAAGAGGATCTCCAAGGGTCGTAAAGGA
GGCAAGAAGAAGATTGTTGATCCTTTCTCCAAGAAGGATTGGTATGACAT
CAAGGCTCCCTCTAACTTCAAACAGAGAAATGTTGGCAAGACTCTTGTTT
CTAGGACTCAGGGTACCAAGATTGCCTCTGAGGGGTTGAAACATAGAGTT
TTTGAGGTTTCACTAGCTGATCTCCAAGGTGATGAGGATCACTCTTACAG
GAAGATTCGTCTCAGAGCTGAAGATGTCCAGGGCAGGAATGTCTTGACCC
AGTTCTGGGGTATGGACTTCACAACGGACAAGCTGAGGTCGTTGGTGAAG
AAGTGGCAGACGTTGATTGAAGCCCATGTCGATGTGAAGACCACTGACAG
CTACACCTTGAGGTTGTTCTGTATTGGTTTCACCAAGAGGCGTGCTAACC
AGGTCAAGCGTACTTGTTATGCTCAGTCCAGCCAAATCCGCCAGATCCGC
AGGAAGATGAGTGAAATCATGGTGAAGGAGGCTTCGTCTTGTGACCTTAA
GGAGCTTGTGGCCAAGTTCATCCCTGAGTCCATCGGGAGAGATATTGAGA
AGGCAGTGCAAAGCATCTACCCGTTGCAGAACGTGTTCATCCGTAAAGTT
AAAATCCTCAAGGCTCCCAAGTTTGACCTTGGAAAGCTCATGGAGGTGCA
TGGAGACTACACAGCAGAGGATGTTGGTGTGAAGGTAGACAGGCCAGCTG
ATGAGGCAACGGCTGAAGAGCCAACTGAAATCATCGGAGCTTAGAGGATT
ATAGATTTGTTTCTTTTTCGTTTGGAAAAAAACTAATGTTTATGTCGCCA
TTTTTGTGGAGTCTCTGTTAAGAGAACTCTGGCGACTGGTTTTGAACACA
GTTTTTTTTTTTTTGTATGGATTCTCCATTTGGTG

protein sequence of A01p03830.1_BnaDARv10-RA

>A01p03830.1_BnaDARv10-PA ID=A01p03830.1_BnaDARv10-PA|Name=A01p03830.1_BnaDARv10-RA|organism=Brassica napus|type=polypeptide|length=263bp
MAVGKNKRISKGRKGGKKKIVDPFSKKDWYDIKAPSNFKQRNVGKTLVSR
TQGTKIASEGLKHRVFEVSLADLQGDEDHSYRKIRLRAEDVQGRNVLTQF
WGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFCIGFTKRRANQV
KRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPESIGRDIEKA
VQSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDRPADE
ATAEEPTEIIGA.

mRNA from alignment at A01_BnaDARv10:1777186..1778667-

Legend: exonthree_prime_UTRpolypeptideCDSfive_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>A01p03830.1_BnaDARv10-RA ID=A01p03830.1_BnaDARv10-RA|Name=A01p03830.1_BnaDARv10-RA|organism=Brassica napus|type=mRNA|length=1482bp|location=Sequence derived from alignment at A01_BnaDARv10:1777186..1778667- (Brassica napus)
GAAGCCGCTTCTTCTTCATCCTCTAGTCGTCAGCACCTTCTGAAGATCCA
TAACCATGGCTGTTGGGTATGCTCCTCTACCTCTCTTACCCACCTTACTG
TATCTGAATCTCTCTCTCATTCTATAGGAAGAACAAGAGGATCTCCAAGG
GTCGTAAAGGAGGCAAGAAGAAGATGTAAGTAAAAAAACATTATCATTAT
CCCTCTGATTAAAAAGTTTTCATTTTTTAGTTATGTTTGAGTTTGAGTTA
AAGTTTGTAACTTGATGATGCAGTGTTGATCCTTTCTCCAAGAAGGATTG
GTATGACATCAAGGCTCCCTCTAACTTCAAACAGAGAAATGTTGGCAAGA
CTCTTGTTTCTAGGACTCAGGGTACCAAGGTAATTTACTTTAATATTGAT
AGAGATTAGTCGAGAAAGGAATTAGCTTTTTTGGTTGGTTGCATTGTGAT
TCGTGTGTGTGTGGTTTCAGATTGCCTCTGAGGGGTTGAAACATAGAGTT
TTTGAGGTTTCACTAGCTGATCTCCAAGGTGATGAGGATCACTCTTACAG
GAAGATTCGTCTCAGAGCTGAAGATGTCCAGGGCAGGAATGTCTTGACCC
AGTTCTGGGTATGTTGTAGTAACTTACTATCTTACAAAAGTTTTGATTTT
TTTTTTTGCAAGTAGTTGAACAATGTAAAACATTCTTTGTAGGGTATGGA
CTTCACAACGGACAAGCTGAGGTCGTTGGTGAAGAAGTGGCAGACGTTGA
TTGAAGCCCATGTCGATGTGAAGACCACTGACAGCTACACCTTGAGGTTG
TTCTGTATTGGTTTCACCAAGAGGCGTGCTAACCAGGTCAAGCGTACTTG
TTATGCTCAGTCCAGCCAAATCCGCCAGGTAACGTTAACATTTATCAAAA
CCATATGCTTAAGATGGCTCCTGTTGTTGACATATGGTTTTGTTGGGATT
GTTTTAGATCCGCAGGAAGATGAGTGAAATCATGGTGAAGGAGGCTTCGT
CTTGTGACCTTAAGGAGCTTGTGGCCAAGTTCATCCCTGAGTCCATCGGG
AGAGATATTGAGAAGGCAGTGCAAAGCATCTACCCGTTGCAGAACGTGTT
CATCCGTAAAGTTAAAATCCTCAAGGCTCCCAAGTTTGACCTTGGAAAGC
TCATGGAGGTGAGTATTGATATCACACTAATGTCTTGGTCTTGACTATGA
AGAGAGTTGAATCTTACTTTGTTTTGTTCTGTTTCTTGTTAGGTGCATGG
AGACTACACAGCAGAGGATGTTGGTGTGAAGGTAGACAGGCCAGCTGATG
AGGCAACGGCTGAAGAGCCAACTGAAATCATCGGAGCTTAGAGGATTATA
GATTTGTTTCTTTTTCGTTTGGAAAAAAACTAATGTTTATGTCGCCATTT
TTGTGGAGTCTCTGTTAAGAGAACTCTGGCGACTGGTTTTGAACACAGTT
TTTTTTTTTTTGTATGGATTCTCCATTTGGTG

Coding sequence (CDS) from alignment at A01_BnaDARv10:1777186..1778667-

>A01p03830.1_BnaDARv10-RA ID=A01p03830.1_BnaDARv10-RA|Name=A01p03830.1_BnaDARv10-RA|organism=Brassica napus|type=CDS|length=789bp|location=Sequence derived from alignment at A01_BnaDARv10:1777186..1778667- (Brassica napus)
ATGGCTGTTGGGAAGAACAAGAGGATCTCCAAGGGTCGTAAAGGAGGCAA
GAAGAAGATTGTTGATCCTTTCTCCAAGAAGGATTGGTATGACATCAAGG
CTCCCTCTAACTTCAAACAGAGAAATGTTGGCAAGACTCTTGTTTCTAGG
ACTCAGGGTACCAAGATTGCCTCTGAGGGGTTGAAACATAGAGTTTTTGA
GGTTTCACTAGCTGATCTCCAAGGTGATGAGGATCACTCTTACAGGAAGA
TTCGTCTCAGAGCTGAAGATGTCCAGGGCAGGAATGTCTTGACCCAGTTC
TGGGGTATGGACTTCACAACGGACAAGCTGAGGTCGTTGGTGAAGAAGTG
GCAGACGTTGATTGAAGCCCATGTCGATGTGAAGACCACTGACAGCTACA
CCTTGAGGTTGTTCTGTATTGGTTTCACCAAGAGGCGTGCTAACCAGGTC
AAGCGTACTTGTTATGCTCAGTCCAGCCAAATCCGCCAGATCCGCAGGAA
GATGAGTGAAATCATGGTGAAGGAGGCTTCGTCTTGTGACCTTAAGGAGC
TTGTGGCCAAGTTCATCCCTGAGTCCATCGGGAGAGATATTGAGAAGGCA
GTGCAAAGCATCTACCCGTTGCAGAACGTGTTCATCCGTAAAGTTAAAAT
CCTCAAGGCTCCCAAGTTTGACCTTGGAAAGCTCATGGAGGTGCATGGAG
ACTACACAGCAGAGGATGTTGGTGTGAAGGTAGACAGGCCAGCTGATGAG
GCAACGGCTGAAGAGCCAACTGAAATCATCGGAGCTTAG