BraA01g006290.3.5C.1 (mRNA) Brassica rapa chifu

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBraA01g006290.3.5C.1
Unique NameBraA01g006290.3.5C.1
TypemRNA
OrganismBrassica rapa chifu (field mustard)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A01contigA01:3016713..3018809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica rapa chifu OGS3.52021-11-28
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BraA01g006290.3.5CBraA01g006290.3.5CBrassica rapa chifugeneA01 3016713..3018809 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BraA01g006290.3.5C.1BraA01g006290.3.5C.1-P1Brassica rapa chifupolypeptideA01 3016762..3018591 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BraA01g006290.3.5C.1.utr5p1BraA01g006290.3.5C.1.utr5p1Brassica rapa chifufive_prime_UTRA01 3016713..3016761 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BraA01g006290.3.5C.1.exon1BraA01g006290.3.5C.1.exon1Brassica rapa chifuexonA01 3016713..3016830 +
BraA01g006290.3.5C.1.exon2BraA01g006290.3.5C.1.exon2Brassica rapa chifuexonA01 3016931..3017401 +
BraA01g006290.3.5C.1.exon3BraA01g006290.3.5C.1.exon3Brassica rapa chifuexonA01 3017500..3017880 +
BraA01g006290.3.5C.1.exon4BraA01g006290.3.5C.1.exon4Brassica rapa chifuexonA01 3017960..3018467 +
BraA01g006290.3.5C.1.exon5BraA01g006290.3.5C.1.exon5Brassica rapa chifuexonA01 3018554..3018809 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
cds.BraA01g006290.3.5C.1cds.BraA01g006290.3.5C.1Brassica rapa chifuCDSA01 3016762..3016830 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BraA01g006290.3.5C.1.utr3p1BraA01g006290.3.5C.1.utr3p1Brassica rapa chifuthree_prime_UTRA01 3018592..3018809 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BraA01g006290.3.5C.1 ID=BraA01g006290.3.5C.1|Name=BraA01g006290.3.5C.1|organism=Brassica rapa chifu|type=mRNA|length=1734bp|location=Sequence derived from alignment at A01:3016713..3018809+ (Brassica rapa chifu)|Notes=Excludes all bases but those of type(s): exon.  
GGAGAGAAAAATAAAAAAACTTGAGAGAGATTACTTGAGCTCTTCCACAA
TGGCGACTTCTCCAAAATCCAACGCACCTTTCTTCGTCATATCTCTTGCT
GGCCACAACTCGAGTCCGATCATCCCTAATGCGTTTTTTGCCACTCACAT
AGAAGGTAAGAATGAGTTAACGAAACTGAAGTTGACCTCTGACGCTTGCG
ACACAACCTGGCAAGTCAAACTGAACGGCCGGAGATTCGCTGATGGCTGG
GAAGATTTCTCCAACGCTCACTGTCTTCGAAACGACGACGTTTTGCTTTT
CAGAGAGGACGGGGAAATGATCTTCCACGTCACACCTTCTGGAAGAAGTT
TCTCCAAGATTCATTATATATCTTCTAGCTCTGACGATAGTGAAGCTGAC
GAAACTGATGATGACGACACTGATGATGATGATGATGATGATAGTGAGGA
TGATGACGGAGATGATCATGGTGATGAGACATGGGACAAAGTTTCAGATT
TGAGAACAAGAATAAAAGCAGAGTCGTCTTCAACTGAAAACTCTTGTATT
CTCGGTGTCACGAGTTCTAATCTTCGCCTAAATCGAGTGGCTCTCACAAA
AAGTTTTACTAAAGCAAATGGACTGCACAAGAGTTGGTGTGAGATTAATG
TAATTAATCAAAGTGGAAAATCATGGGTTATGGGTCTGCGACACAACAAA
GGAACTGGTCAGGATTATATGCGTGGTGGCTGGAGAAGTTTCTGCCGTGC
AAACAAGCTGAAAACCGGATCTTTCTACCGGTTCGAACTTCTCCGGACTG
GGACAAGCCCTGCGCTAAAGCTGTGTTCCGACAATACTTCACAAAGAAAA
TGTTCCAAAGCCAAAGTTTCGACAAATCTTAACAGGGAAGGTGGTGAGAG
ATCTTCTATGAACCGGAGCAAGTTCATGACGGTAACCTTGAAGCCTTACA
TGCTCAAGTCAAGACAGCTTCATTTTCAAAACTCTTTTGCGAGGGAGAAC
GGGATTAAGAAAGGAGGAAAGGTTAATCTGGTGGACAAAGATGGAGGAAG
ATGGCCGTCGTGTGTAGCTTCTGGGTATGTAAACGGAGGGTTTTATTTGG
CTAAGGGTTGGGTAGGTTGTTGTAAAGCCAGTGGGATAAACACTGGAGAT
ACCTTCACGTTGCAGTTTGTTCGAGAAAAAGGCAAAACTCCTATGCTTCA
GTTCGTCTCCAAGGCCAAGACCAAGATAAACTCAGGGACTAGGTTCCAAA
AGAAAGCTAGGGTTTCTGTAGAAGGAGAACCCTCTCACCGCACTCATGCA
TCACACAAATCAACTGTTGGTACAAATAACGTGGAGTGCAAGCAACCGCT
TGAAACAATCTCTCATCAAGTGAGACAGGGCATTGTGAACGTTTTAGCTG
ATGTAAGACGGTTCCGGTCTGAGCTTGAGATAAAGAAACAAAATTTAGAA
GCTGTACTGGAGGAATTTGACGCGTTAGGGGAGAAAGTATCGGAAATCAA
CAAATTCTTCAAGTAATTATATTAGGCTTAAATGTATTGTATTGAAGATG
AAGAAATTGAACATGGACTTGTGTAAACTTTGTTTGTATGGAAGATCAAG
GAATTGAACAAGGTCGAACAAGATGCGTACTTGTATGTGTTGTTATATAA
TTATGTAACTACGTTACAATGGATATTGATATGTAATGTACTTTCTAATT
CATAAATTAGTAATTTTGATTTGTTTTTGTTTTT
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protein sequence of BraA01g006290.3.5C.1

>BraA01g006290.3.5C.1-P1 ID=BraA01g006290.3.5C.1-P1|Name=BraA01g006290.3.5C.1|organism=Brassica rapa chifu|type=polypeptide|length=489bp
MATSPKSNAPFFVISLAGHNSSPIIPNAFFATHIEGKNELTKLKLTSDAC
DTTWQVKLNGRRFADGWEDFSNAHCLRNDDVLLFREDGEMIFHVTPSGRS
FSKIHYISSSSDDSEADETDDDDTDDDDDDDSEDDDGDDHGDETWDKVSD
LRTRIKAESSSTENSCILGVTSSNLRLNRVALTKSFTKANGLHKSWCEIN
VINQSGKSWVMGLRHNKGTGQDYMRGGWRSFCRANKLKTGSFYRFELLRT
GTSPALKLCSDNTSQRKCSKAKVSTNLNREGGERSSMNRSKFMTVTLKPY
MLKSRQLHFQNSFARENGIKKGGKVNLVDKDGGRWPSCVASGYVNGGFYL
AKGWVGCCKASGINTGDTFTLQFVREKGKTPMLQFVSKAKTKINSGTRFQ
KKARVSVEGEPSHRTHASHKSTVGTNNVECKQPLETISHQVRQGIVNVLA
DVRRFRSELEIKKQNLEAVLEEFDALGEKVSEINKFFK.
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mRNA from alignment at A01:3016713..3018809+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>BraA01g006290.3.5C.1 ID=BraA01g006290.3.5C.1|Name=BraA01g006290.3.5C.1|organism=Brassica rapa chifu|type=mRNA|length=2097bp|location=Sequence derived from alignment at A01:3016713..3018809+ (Brassica rapa chifu)
GGAGAGAAAAATAAAAAAACTTGAGAGAGATTACTTGAGCTCTTCCACAA
TGGCGACTTCTCCAAAATCCAACGCACCTTTCTTCGTCATATCTCTTGCT
GGCCACAACTCGAGTCCGGTAATCTCTTTCTCTCTCTCTCCGGTACAACT
TATTATGTTTGGTTTAATCTCTCTCTGTTACTTCTTATTTTATTTTTTTA
TCATTTTTGTTGTTGCAGATCATCCCTAATGCGTTTTTTGCCACTCACAT
AGAAGGTAAGAATGAGTTAACGAAACTGAAGTTGACCTCTGACGCTTGCG
ACACAACCTGGCAAGTCAAACTGAACGGCCGGAGATTCGCTGATGGCTGG
GAAGATTTCTCCAACGCTCACTGTCTTCGAAACGACGACGTTTTGCTTTT
CAGAGAGGACGGGGAAATGATCTTCCACGTCACACCTTCTGGAAGAAGTT
TCTCCAAGATTCATTATATATCTTCTAGCTCTGACGATAGTGAAGCTGAC
GAAACTGATGATGACGACACTGATGATGATGATGATGATGATAGTGAGGA
TGATGACGGAGATGATCATGGTGATGAGACATGGGACAAAGTTTCAGATT
TGAGAACAAGAATAAAAGCAGAGTCGTCTTCAACTGAAAACTCTTGTATT
CTCGGTGTCACGAGTTCTAATCTTCGCCTAAATCGAGTGGTTAGTACTTA
TAACTCAACCTCTCTAGAGAGTTTTTGTCCTGAGTCATGTAAATGTAAAC
ATTGAGACTGTTTTTTTTTATTTGCTTGTTTGACAAGGCTCTCACAAAAA
GTTTTACTAAAGCAAATGGACTGCACAAGAGTTGGTGTGAGATTAATGTA
ATTAATCAAAGTGGAAAATCATGGGTTATGGGTCTGCGACACAACAAAGG
AACTGGTCAGGATTATATGCGTGGTGGCTGGAGAAGTTTCTGCCGTGCAA
ACAAGCTGAAAACCGGATCTTTCTACCGGTTCGAACTTCTCCGGACTGGG
ACAAGCCCTGCGCTAAAGCTGTGTTCCGACAATACTTCACAAAGAAAATG
TTCCAAAGCCAAAGTTTCGACAAATCTTAACAGGGAAGGTGGTGAGAGAT
CTTCTATGAACCGGAGCAAGTTCATGACGGTAACCTTGAAGCCTTACATG
CTCAAGTCAAGACAGCTTGTGAGTTTTCAACATCCTTAGGTTTTGTTGTT
TATTTGATTAAGTAATATACTTTTAAGGAGGCTTTTAAACTTTGCAGCAT
TTTCAAAACTCTTTTGCGAGGGAGAACGGGATTAAGAAAGGAGGAAAGGT
TAATCTGGTGGACAAAGATGGAGGAAGATGGCCGTCGTGTGTAGCTTCTG
GGTATGTAAACGGAGGGTTTTATTTGGCTAAGGGTTGGGTAGGTTGTTGT
AAAGCCAGTGGGATAAACACTGGAGATACCTTCACGTTGCAGTTTGTTCG
AGAAAAAGGCAAAACTCCTATGCTTCAGTTCGTCTCCAAGGCCAAGACCA
AGATAAACTCAGGGACTAGGTTCCAAAAGAAAGCTAGGGTTTCTGTAGAA
GGAGAACCCTCTCACCGCACTCATGCATCACACAAATCAACTGTTGGTAC
AAATAACGTGGAGTGCAAGCAACCGCTTGAAACAATCTCTCATCAAGTGA
GACAGGGCATTGTGAACGTTTTAGCTGATGTAAGACGGTTCCGGTCTGAG
CTTGAGATAAAGAAACAAAATTTAGAAGCTGTACTGGAGGAATTTGACGC
GTTAGGTATGATCTGAACATTGATGAACTCTTCTCGTCTCTTTTGCTATT
TTGGTTTTAAGTTTCTAACATTTTAATGTTGGAATAAACAGGGGAGAAAG
TATCGGAAATCAACAAATTCTTCAAGTAATTATATTAGGCTTAAATGTAT
TGTATTGAAGATGAAGAAATTGAACATGGACTTGTGTAAACTTTGTTTGT
ATGGAAGATCAAGGAATTGAACAAGGTCGAACAAGATGCGTACTTGTATG
TGTTGTTATATAATTATGTAACTACGTTACAATGGATATTGATATGTAAT
GTACTTTCTAATTCATAAATTAGTAATTTTGATTTGTTTTTGTTTTT
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Coding sequence (CDS) from alignment at A01:3016713..3018809+

>BraA01g006290.3.5C.1 ID=BraA01g006290.3.5C.1|Name=BraA01g006290.3.5C.1|organism=Brassica rapa chifu|type=CDS|length=1467bp|location=Sequence derived from alignment at A01:3016713..3018809+ (Brassica rapa chifu)
ATGGCGACTTCTCCAAAATCCAACGCACCTTTCTTCGTCATATCTCTTGC
TGGCCACAACTCGAGTCCGATCATCCCTAATGCGTTTTTTGCCACTCACA
TAGAAGGTAAGAATGAGTTAACGAAACTGAAGTTGACCTCTGACGCTTGC
GACACAACCTGGCAAGTCAAACTGAACGGCCGGAGATTCGCTGATGGCTG
GGAAGATTTCTCCAACGCTCACTGTCTTCGAAACGACGACGTTTTGCTTT
TCAGAGAGGACGGGGAAATGATCTTCCACGTCACACCTTCTGGAAGAAGT
TTCTCCAAGATTCATTATATATCTTCTAGCTCTGACGATAGTGAAGCTGA
CGAAACTGATGATGACGACACTGATGATGATGATGATGATGATAGTGAGG
ATGATGACGGAGATGATCATGGTGATGAGACATGGGACAAAGTTTCAGAT
TTGAGAACAAGAATAAAAGCAGAGTCGTCTTCAACTGAAAACTCTTGTAT
TCTCGGTGTCACGAGTTCTAATCTTCGCCTAAATCGAGTGGCTCTCACAA
AAAGTTTTACTAAAGCAAATGGACTGCACAAGAGTTGGTGTGAGATTAAT
GTAATTAATCAAAGTGGAAAATCATGGGTTATGGGTCTGCGACACAACAA
AGGAACTGGTCAGGATTATATGCGTGGTGGCTGGAGAAGTTTCTGCCGTG
CAAACAAGCTGAAAACCGGATCTTTCTACCGGTTCGAACTTCTCCGGACT
GGGACAAGCCCTGCGCTAAAGCTGTGTTCCGACAATACTTCACAAAGAAA
ATGTTCCAAAGCCAAAGTTTCGACAAATCTTAACAGGGAAGGTGGTGAGA
GATCTTCTATGAACCGGAGCAAGTTCATGACGGTAACCTTGAAGCCTTAC
ATGCTCAAGTCAAGACAGCTTCATTTTCAAAACTCTTTTGCGAGGGAGAA
CGGGATTAAGAAAGGAGGAAAGGTTAATCTGGTGGACAAAGATGGAGGAA
GATGGCCGTCGTGTGTAGCTTCTGGGTATGTAAACGGAGGGTTTTATTTG
GCTAAGGGTTGGGTAGGTTGTTGTAAAGCCAGTGGGATAAACACTGGAGA
TACCTTCACGTTGCAGTTTGTTCGAGAAAAAGGCAAAACTCCTATGCTTC
AGTTCGTCTCCAAGGCCAAGACCAAGATAAACTCAGGGACTAGGTTCCAA
AAGAAAGCTAGGGTTTCTGTAGAAGGAGAACCCTCTCACCGCACTCATGC
ATCACACAAATCAACTGTTGGTACAAATAACGTGGAGTGCAAGCAACCGC
TTGAAACAATCTCTCATCAAGTGAGACAGGGCATTGTGAACGTTTTAGCT
GATGTAAGACGGTTCCGGTCTGAGCTTGAGATAAAGAAACAAAATTTAGA
AGCTGTACTGGAGGAATTTGACGCGTTAGGGGAGAAAGTATCGGAAATCA
ACAAATTCTTCAAGTAA
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