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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Analysis Name | Date Performed |
Brassica rapa chifu OGS3.5 | 2021-11-28 |
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Species | Type | Position |
BraA01g006290.3.5C | BraA01g006290.3.5C | Brassica rapa chifu | gene | A01 3016713..3018809 + |
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
BraA01g006290.3.5C.1.utr5p1 | BraA01g006290.3.5C.1.utr5p1 | Brassica rapa chifu | five_prime_UTR | A01 3016713..3016761 + |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
BraA01g006290.3.5C.1.exon1 | BraA01g006290.3.5C.1.exon1 | Brassica rapa chifu | exon | A01 3016713..3016830 + |
BraA01g006290.3.5C.1.exon2 | BraA01g006290.3.5C.1.exon2 | Brassica rapa chifu | exon | A01 3016931..3017401 + |
BraA01g006290.3.5C.1.exon3 | BraA01g006290.3.5C.1.exon3 | Brassica rapa chifu | exon | A01 3017500..3017880 + |
BraA01g006290.3.5C.1.exon4 | BraA01g006290.3.5C.1.exon4 | Brassica rapa chifu | exon | A01 3017960..3018467 + |
BraA01g006290.3.5C.1.exon5 | BraA01g006290.3.5C.1.exon5 | Brassica rapa chifu | exon | A01 3018554..3018809 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
cds.BraA01g006290.3.5C.1 | cds.BraA01g006290.3.5C.1 | Brassica rapa chifu | CDS | A01 3016762..3016830 + |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
BraA01g006290.3.5C.1.utr3p1 | BraA01g006290.3.5C.1.utr3p1 | Brassica rapa chifu | three_prime_UTR | A01 3018592..3018809 + |
Sequences
The following sequences are available for this feature:
spliced messenger RNA >BraA01g006290.3.5C.1 ID=BraA01g006290.3.5C.1|Name=BraA01g006290.3.5C.1|organism=Brassica rapa chifu|type=mRNA|length=1734bp|location=Sequence derived from alignment at A01:3016713..3018809+ (Brassica rapa chifu)|Notes=Excludes all bases but those of type(s): exon.
GGAGAGAAAAATAAAAAAACTTGAGAGAGATTACTTGAGCTCTTCCACAA TGGCGACTTCTCCAAAATCCAACGCACCTTTCTTCGTCATATCTCTTGCT GGCCACAACTCGAGTCCGATCATCCCTAATGCGTTTTTTGCCACTCACAT AGAAGGTAAGAATGAGTTAACGAAACTGAAGTTGACCTCTGACGCTTGCG ACACAACCTGGCAAGTCAAACTGAACGGCCGGAGATTCGCTGATGGCTGG GAAGATTTCTCCAACGCTCACTGTCTTCGAAACGACGACGTTTTGCTTTT CAGAGAGGACGGGGAAATGATCTTCCACGTCACACCTTCTGGAAGAAGTT TCTCCAAGATTCATTATATATCTTCTAGCTCTGACGATAGTGAAGCTGAC GAAACTGATGATGACGACACTGATGATGATGATGATGATGATAGTGAGGA TGATGACGGAGATGATCATGGTGATGAGACATGGGACAAAGTTTCAGATT TGAGAACAAGAATAAAAGCAGAGTCGTCTTCAACTGAAAACTCTTGTATT CTCGGTGTCACGAGTTCTAATCTTCGCCTAAATCGAGTGGCTCTCACAAA AAGTTTTACTAAAGCAAATGGACTGCACAAGAGTTGGTGTGAGATTAATG TAATTAATCAAAGTGGAAAATCATGGGTTATGGGTCTGCGACACAACAAA GGAACTGGTCAGGATTATATGCGTGGTGGCTGGAGAAGTTTCTGCCGTGC AAACAAGCTGAAAACCGGATCTTTCTACCGGTTCGAACTTCTCCGGACTG GGACAAGCCCTGCGCTAAAGCTGTGTTCCGACAATACTTCACAAAGAAAA TGTTCCAAAGCCAAAGTTTCGACAAATCTTAACAGGGAAGGTGGTGAGAG ATCTTCTATGAACCGGAGCAAGTTCATGACGGTAACCTTGAAGCCTTACA TGCTCAAGTCAAGACAGCTTCATTTTCAAAACTCTTTTGCGAGGGAGAAC GGGATTAAGAAAGGAGGAAAGGTTAATCTGGTGGACAAAGATGGAGGAAG ATGGCCGTCGTGTGTAGCTTCTGGGTATGTAAACGGAGGGTTTTATTTGG CTAAGGGTTGGGTAGGTTGTTGTAAAGCCAGTGGGATAAACACTGGAGAT ACCTTCACGTTGCAGTTTGTTCGAGAAAAAGGCAAAACTCCTATGCTTCA GTTCGTCTCCAAGGCCAAGACCAAGATAAACTCAGGGACTAGGTTCCAAA AGAAAGCTAGGGTTTCTGTAGAAGGAGAACCCTCTCACCGCACTCATGCA TCACACAAATCAACTGTTGGTACAAATAACGTGGAGTGCAAGCAACCGCT TGAAACAATCTCTCATCAAGTGAGACAGGGCATTGTGAACGTTTTAGCTG ATGTAAGACGGTTCCGGTCTGAGCTTGAGATAAAGAAACAAAATTTAGAA GCTGTACTGGAGGAATTTGACGCGTTAGGGGAGAAAGTATCGGAAATCAA CAAATTCTTCAAGTAATTATATTAGGCTTAAATGTATTGTATTGAAGATG AAGAAATTGAACATGGACTTGTGTAAACTTTGTTTGTATGGAAGATCAAG GAATTGAACAAGGTCGAACAAGATGCGTACTTGTATGTGTTGTTATATAA TTATGTAACTACGTTACAATGGATATTGATATGTAATGTACTTTCTAATT CATAAATTAGTAATTTTGATTTGTTTTTGTTTTT back to topprotein sequence of BraA01g006290.3.5C.1 >BraA01g006290.3.5C.1-P1 ID=BraA01g006290.3.5C.1-P1|Name=BraA01g006290.3.5C.1|organism=Brassica rapa chifu|type=polypeptide|length=489bp
MATSPKSNAPFFVISLAGHNSSPIIPNAFFATHIEGKNELTKLKLTSDAC DTTWQVKLNGRRFADGWEDFSNAHCLRNDDVLLFREDGEMIFHVTPSGRS FSKIHYISSSSDDSEADETDDDDTDDDDDDDSEDDDGDDHGDETWDKVSD LRTRIKAESSSTENSCILGVTSSNLRLNRVALTKSFTKANGLHKSWCEIN VINQSGKSWVMGLRHNKGTGQDYMRGGWRSFCRANKLKTGSFYRFELLRT GTSPALKLCSDNTSQRKCSKAKVSTNLNREGGERSSMNRSKFMTVTLKPY MLKSRQLHFQNSFARENGIKKGGKVNLVDKDGGRWPSCVASGYVNGGFYL AKGWVGCCKASGINTGDTFTLQFVREKGKTPMLQFVSKAKTKINSGTRFQ KKARVSVEGEPSHRTHASHKSTVGTNNVECKQPLETISHQVRQGIVNVLA DVRRFRSELEIKKQNLEAVLEEFDALGEKVSEINKFFK. back to topmRNA from alignment at A01:3016713..3018809+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >BraA01g006290.3.5C.1 ID=BraA01g006290.3.5C.1|Name=BraA01g006290.3.5C.1|organism=Brassica rapa chifu|type=mRNA|length=2097bp|location=Sequence derived from alignment at A01:3016713..3018809+ (Brassica rapa chifu) GGAGAGAAAAATAAAAAAACTTGAGAGAGATTACTTGAGCTCTTCCACAA
TGGCGACTTCTCCAAAATCCAACGCACCTTTCTTCGTCATATCTCTTGCT
GGCCACAACTCGAGTCCGGTAATCTCTTTCTCTCTCTCTCCGGTACAACT
TATTATGTTTGGTTTAATCTCTCTCTGTTACTTCTTATTTTATTTTTTTA
TCATTTTTGTTGTTGCAGATCATCCCTAATGCGTTTTTTGCCACTCACAT
AGAAGGTAAGAATGAGTTAACGAAACTGAAGTTGACCTCTGACGCTTGCG
ACACAACCTGGCAAGTCAAACTGAACGGCCGGAGATTCGCTGATGGCTGG
GAAGATTTCTCCAACGCTCACTGTCTTCGAAACGACGACGTTTTGCTTTT
CAGAGAGGACGGGGAAATGATCTTCCACGTCACACCTTCTGGAAGAAGTT
TCTCCAAGATTCATTATATATCTTCTAGCTCTGACGATAGTGAAGCTGAC
GAAACTGATGATGACGACACTGATGATGATGATGATGATGATAGTGAGGA
TGATGACGGAGATGATCATGGTGATGAGACATGGGACAAAGTTTCAGATT
TGAGAACAAGAATAAAAGCAGAGTCGTCTTCAACTGAAAACTCTTGTATT
CTCGGTGTCACGAGTTCTAATCTTCGCCTAAATCGAGTGGTTAGTACTTA
TAACTCAACCTCTCTAGAGAGTTTTTGTCCTGAGTCATGTAAATGTAAAC
ATTGAGACTGTTTTTTTTTATTTGCTTGTTTGACAAGGCTCTCACAAAAA
GTTTTACTAAAGCAAATGGACTGCACAAGAGTTGGTGTGAGATTAATGTA
ATTAATCAAAGTGGAAAATCATGGGTTATGGGTCTGCGACACAACAAAGG
AACTGGTCAGGATTATATGCGTGGTGGCTGGAGAAGTTTCTGCCGTGCAA
ACAAGCTGAAAACCGGATCTTTCTACCGGTTCGAACTTCTCCGGACTGGG
ACAAGCCCTGCGCTAAAGCTGTGTTCCGACAATACTTCACAAAGAAAATG
TTCCAAAGCCAAAGTTTCGACAAATCTTAACAGGGAAGGTGGTGAGAGAT
CTTCTATGAACCGGAGCAAGTTCATGACGGTAACCTTGAAGCCTTACATG
CTCAAGTCAAGACAGCTTGTGAGTTTTCAACATCCTTAGGTTTTGTTGTT
TATTTGATTAAGTAATATACTTTTAAGGAGGCTTTTAAACTTTGCAGCAT
TTTCAAAACTCTTTTGCGAGGGAGAACGGGATTAAGAAAGGAGGAAAGGT
TAATCTGGTGGACAAAGATGGAGGAAGATGGCCGTCGTGTGTAGCTTCTG
GGTATGTAAACGGAGGGTTTTATTTGGCTAAGGGTTGGGTAGGTTGTTGT
AAAGCCAGTGGGATAAACACTGGAGATACCTTCACGTTGCAGTTTGTTCG
AGAAAAAGGCAAAACTCCTATGCTTCAGTTCGTCTCCAAGGCCAAGACCA
AGATAAACTCAGGGACTAGGTTCCAAAAGAAAGCTAGGGTTTCTGTAGAA
GGAGAACCCTCTCACCGCACTCATGCATCACACAAATCAACTGTTGGTAC
AAATAACGTGGAGTGCAAGCAACCGCTTGAAACAATCTCTCATCAAGTGA
GACAGGGCATTGTGAACGTTTTAGCTGATGTAAGACGGTTCCGGTCTGAG
CTTGAGATAAAGAAACAAAATTTAGAAGCTGTACTGGAGGAATTTGACGC
GTTAGGTATGATCTGAACATTGATGAACTCTTCTCGTCTCTTTTGCTATT
TTGGTTTTAAGTTTCTAACATTTTAATGTTGGAATAAACAGGGGAGAAAG
TATCGGAAATCAACAAATTCTTCAAGTAATTATATTAGGCTTAAATGTAT
TGTATTGAAGATGAAGAAATTGAACATGGACTTGTGTAAACTTTGTTTGT
ATGGAAGATCAAGGAATTGAACAAGGTCGAACAAGATGCGTACTTGTATG
TGTTGTTATATAATTATGTAACTACGTTACAATGGATATTGATATGTAAT
GTACTTTCTAATTCATAAATTAGTAATTTTGATTTGTTTTTGTTTTT back to topCoding sequence (CDS) from alignment at A01:3016713..3018809+ >BraA01g006290.3.5C.1 ID=BraA01g006290.3.5C.1|Name=BraA01g006290.3.5C.1|organism=Brassica rapa chifu|type=CDS|length=1467bp|location=Sequence derived from alignment at A01:3016713..3018809+ (Brassica rapa chifu) ATGGCGACTTCTCCAAAATCCAACGCACCTTTCTTCGTCATATCTCTTGC TGGCCACAACTCGAGTCCGATCATCCCTAATGCGTTTTTTGCCACTCACA TAGAAGGTAAGAATGAGTTAACGAAACTGAAGTTGACCTCTGACGCTTGC GACACAACCTGGCAAGTCAAACTGAACGGCCGGAGATTCGCTGATGGCTG GGAAGATTTCTCCAACGCTCACTGTCTTCGAAACGACGACGTTTTGCTTT TCAGAGAGGACGGGGAAATGATCTTCCACGTCACACCTTCTGGAAGAAGT TTCTCCAAGATTCATTATATATCTTCTAGCTCTGACGATAGTGAAGCTGA CGAAACTGATGATGACGACACTGATGATGATGATGATGATGATAGTGAGG ATGATGACGGAGATGATCATGGTGATGAGACATGGGACAAAGTTTCAGAT TTGAGAACAAGAATAAAAGCAGAGTCGTCTTCAACTGAAAACTCTTGTAT TCTCGGTGTCACGAGTTCTAATCTTCGCCTAAATCGAGTGGCTCTCACAA AAAGTTTTACTAAAGCAAATGGACTGCACAAGAGTTGGTGTGAGATTAAT GTAATTAATCAAAGTGGAAAATCATGGGTTATGGGTCTGCGACACAACAA AGGAACTGGTCAGGATTATATGCGTGGTGGCTGGAGAAGTTTCTGCCGTG CAAACAAGCTGAAAACCGGATCTTTCTACCGGTTCGAACTTCTCCGGACT GGGACAAGCCCTGCGCTAAAGCTGTGTTCCGACAATACTTCACAAAGAAA ATGTTCCAAAGCCAAAGTTTCGACAAATCTTAACAGGGAAGGTGGTGAGA GATCTTCTATGAACCGGAGCAAGTTCATGACGGTAACCTTGAAGCCTTAC ATGCTCAAGTCAAGACAGCTTCATTTTCAAAACTCTTTTGCGAGGGAGAA CGGGATTAAGAAAGGAGGAAAGGTTAATCTGGTGGACAAAGATGGAGGAA GATGGCCGTCGTGTGTAGCTTCTGGGTATGTAAACGGAGGGTTTTATTTG GCTAAGGGTTGGGTAGGTTGTTGTAAAGCCAGTGGGATAAACACTGGAGA TACCTTCACGTTGCAGTTTGTTCGAGAAAAAGGCAAAACTCCTATGCTTC AGTTCGTCTCCAAGGCCAAGACCAAGATAAACTCAGGGACTAGGTTCCAA AAGAAAGCTAGGGTTTCTGTAGAAGGAGAACCCTCTCACCGCACTCATGC ATCACACAAATCAACTGTTGGTACAAATAACGTGGAGTGCAAGCAACCGC TTGAAACAATCTCTCATCAAGTGAGACAGGGCATTGTGAACGTTTTAGCT GATGTAAGACGGTTCCGGTCTGAGCTTGAGATAAAGAAACAAAATTTAGA AGCTGTACTGGAGGAATTTGACGCGTTAGGGGAGAAAGTATCGGAAATCA ACAAATTCTTCAAGTAA back to top
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