BraA01g002510.3.5C.1 (mRNA) Brassica rapa chifu

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBraA01g002510.3.5C.1
Unique NameBraA01g002510.3.5C.1
TypemRNA
OrganismBrassica rapa chifu (field mustard)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A01contigA01:1265195..1266998 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica rapa chifu OGS3.52021-11-28
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BraA01g002510.3.5CBraA01g002510.3.5CBrassica rapa chifugeneA01 1265195..1266998 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BraA01g002510.3.5C.1BraA01g002510.3.5C.1-P1Brassica rapa chifupolypeptideA01 1265324..1266301 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BraA01g002510.3.5C.1.exon3BraA01g002510.3.5C.1.exon3Brassica rapa chifuexonA01 1265195..1265498 -
BraA01g002510.3.5C.1.exon2BraA01g002510.3.5C.1.exon2Brassica rapa chifuexonA01 1265628..1266351 -
BraA01g002510.3.5C.1.exon1BraA01g002510.3.5C.1.exon1Brassica rapa chifuexonA01 1266878..1266998 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BraA01g002510.3.5C.1.utr3p1BraA01g002510.3.5C.1.utr3p1Brassica rapa chifuthree_prime_UTRA01 1265195..1265323 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
cds.BraA01g002510.3.5C.1cds.BraA01g002510.3.5C.1Brassica rapa chifuCDSA01 1265628..1266301 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BraA01g002510.3.5C.1.utr5p2BraA01g002510.3.5C.1.utr5p2Brassica rapa chifufive_prime_UTRA01 1266302..1266351 -
BraA01g002510.3.5C.1.utr5p1BraA01g002510.3.5C.1.utr5p1Brassica rapa chifufive_prime_UTRA01 1266878..1266998 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BraA01g002510.3.5C.1 ID=BraA01g002510.3.5C.1|Name=BraA01g002510.3.5C.1|organism=Brassica rapa chifu|type=mRNA|length=1149bp|location=Sequence derived from alignment at A01:1265195..1266998- (Brassica rapa chifu)|Notes=Excludes all bases but those of type(s): exon.  
ATTCCAATTTCCCGAACACAAAACTTTCAGACATGTTTGGTCTTAAACTG
GTTCATCTCCCTTAATCTCTGTAAATATCTCTGCCAATCGGCGACGGACT
CGAATCAAACCTAATCTTCTGAAACAAGTTTTCTTAGCTTTTAGTTTTGG
ACAAAGATCTTGGGAATAGCTATGTCTACACATGATTCATCATCAAGAGA
AGCCCTTGAGATAGAATTTGGTTTACTGCAAGTGGATTATGATTTACAAG
CTGAGCTGCTGGATAGGGTCAAATCAGCTGCAACCAGCTTACACTATTTG
AGGTCAAAAGCTACCATCTTGGCTGAAGAGGTAGAGCTAGAAGATGATGG
TTCAGTTTCTGAAGTGGACAAGGACATCATCAGTCTTCTGACTTTTACTA
GAACTAGCAAGAACCAAGACTCCTTGGTTGTTACAGAGGATGGAGCTATG
CTCCAGTCCATACAGATGATTGCTGATGTGCTGGAGTCTCTTCTGAGGAG
AGTCACCGCAGCAGAATCTGAAGCCTCGTTTCAAAAGGAGAGGGTGATTA
TCGGCGAGGAAGAGATTAGAAGGAAGACGATTCAAATCGAGAATATGTCA
TTGAGGTTAGAAGAGATGAAACAGATTGTACATGAGAATAAAGATGTTCT
CGATGAAACAGTGGAGATAATTAAGAAACTGGTTGAAGATAGTAGGAAGG
ATAGAGAGAAAGCTGTTGAGAATGAAGAGGAGCTCCGTCGTGTGAAGACA
GAGTTTGAGTCGCTTAGAAATTATGTTAATACTTCCACCAATGTTGTGGA
AACACTTCTTTCATCGGAGAGGCAGTTCCAAACTATCGAAGCACGGCTGG
TTGCTAAGTCTGCACAGCTGGAAGGCGAGAAGGCGCAGAAAGAGGTAGAA
GTTCAAAAGCTGATGGAGGAGAACGTGAAGCTAACCGCTCTTCTTGACAA
TAAAGAAGCGCAGCTTCAAGCCTTGAATGAACAATGCAAAGTCATGGCTT
TGAATGCTTCAAACTTCTGATTCTGCATATTTCAAAGCCGTACTTAATTT
GGTATGGCCTATGGGATTCTTATGTTGTTCAGATTTGACATTCTGGTAAC
TCTGTACAATCATGGCTTTGAATAAGCAAGCAAAGTTGATCCGTTGGCT
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protein sequence of BraA01g002510.3.5C.1

>BraA01g002510.3.5C.1-P1 ID=BraA01g002510.3.5C.1-P1|Name=BraA01g002510.3.5C.1|organism=Brassica rapa chifu|type=polypeptide|length=283bp
MSTHDSSSREALEIEFGLLQVDYDLQAELLDRVKSAATSLHYLRSKATIL
AEEVELEDDGSVSEVDKDIISLLTFTRTSKNQDSLVVTEDGAMLQSIQMI
ADVLESLLRRVTAAESEASFQKERVIIGEEEIRRKTIQIENMSLRLEEMK
QIVHENKDVLDETVEIIKKLVEDSRKDREKAVENEEELRRVKTEFESLRN
YVNTSTNVVETLLSSERQFQTIEARLVAKSAQLEGEKAQKEVEVQKLMEE
NVKLTALLDNKEAQLQALNEQCKVMALNASNF.
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mRNA from alignment at A01:1265195..1266998-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>BraA01g002510.3.5C.1 ID=BraA01g002510.3.5C.1|Name=BraA01g002510.3.5C.1|organism=Brassica rapa chifu|type=mRNA|length=1804bp|location=Sequence derived from alignment at A01:1265195..1266998- (Brassica rapa chifu)
ATTCCAATTTCCCGAACACAAAACTTTCAGACATGTTTGGTCTTAAACTG
GTTCATCTCCCTTAATCTCTGTAAATATCTCTGCCAATCGGCGACGGACT
CGAATCAAACCTAATCTTCTGGTAATCGTACGGATCCTTATTTTGTGCCA
TAAGTTTGTTCATTTTTCGTTCTAGATTCGTGCTCACGACCATTCGATCT
CAACTACAGTCACGGTTTCTCTTGGTGAATTTAGCTTGTTTGTCTGTTTC
ATGTTTCGACTCTAGTGTGTTAAATATGGTTTCTGCTTGTTTTCAAATCA
ATACCACTGATCATGGTGTCTAATTCACCATAGTTTGTTGATATTCATGT
AAATTGTTGTTCTGAGACTGTCCAAATAGTTTCAAAATCAGTGGAAAAGG
GTTCTGTATGATTAGTGTTGTACTTGTCTTAGATTAGAAGATTTATCTTG
TGAAGCTAATTATATATTTTTTAATTACTTCTGTCTTGATCTTGGTATCA
ATCATTGTCATTGCTCAGTCAATAGGAGACTTACTTACTCAACACATTAT
CATGAGCCCCATTTGATTTTCTTTATTTTCTATGTCAACCAACTAGATAA
TGTTGTTTTAGTTTTGATTCTAAAGCTTTTCTTTTTTATTATTGCAGAAA
CAAGTTTTCTTAGCTTTTAGTTTTGGACAAAGATCTTGGGAATAGCTATG
TCTACACATGATTCATCATCAAGAGAAGCCCTTGAGATAGAATTTGGTTT
ACTGCAAGTGGATTATGATTTACAAGCTGAGCTGCTGGATAGGGTCAAAT
CAGCTGCAACCAGCTTACACTATTTGAGGTCAAAAGCTACCATCTTGGCT
GAAGAGGTAGAGCTAGAAGATGATGGTTCAGTTTCTGAAGTGGACAAGGA
CATCATCAGTCTTCTGACTTTTACTAGAACTAGCAAGAACCAAGACTCCT
TGGTTGTTACAGAGGATGGAGCTATGCTCCAGTCCATACAGATGATTGCT
GATGTGCTGGAGTCTCTTCTGAGGAGAGTCACCGCAGCAGAATCTGAAGC
CTCGTTTCAAAAGGAGAGGGTGATTATCGGCGAGGAAGAGATTAGAAGGA
AGACGATTCAAATCGAGAATATGTCATTGAGGTTAGAAGAGATGAAACAG
ATTGTACATGAGAATAAAGATGTTCTCGATGAAACAGTGGAGATAATTAA
GAAACTGGTTGAAGATAGTAGGAAGGATAGAGAGAAAGCTGTTGAGAATG
AAGAGGAGCTCCGTCGTGTGAAGACAGAGTTTGAGTCGCTTAGAAATTAT
GTTAATACTTCCACCAATGTTGTGGAAACACTTCTTTCATCGGAGAGGCA
GTTCCAAACTATCGAAGCACGGTTAGTCTCATCTCTTTTGTAACGCAACT
CCAAAGCAATGTCTAGGATAGCTTAAAGAACGGAATAATCAGTAGGTTAC
TTGACGGTTTAGTTCACTGACTTGAATCCATTATCATATTGTGGAAGCAG
GCTGGTTGCTAAGTCTGCACAGCTGGAAGGCGAGAAGGCGCAGAAAGAGG
TAGAAGTTCAAAAGCTGATGGAGGAGAACGTGAAGCTAACCGCTCTTCTT
GACAATAAAGAAGCGCAGCTTCAAGCCTTGAATGAACAATGCAAAGTCAT
GGCTTTGAATGCTTCAAACTTCTGATTCTGCATATTTCAAAGCCGTACTT
AATTTGGTATGGCCTATGGGATTCTTATGTTGTTCAGATTTGACATTCTG
GTAACTCTGTACAATCATGGCTTTGAATAAGCAAGCAAAGTTGATCCGTT
GGCT
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Coding sequence (CDS) from alignment at A01:1265195..1266998-

>BraA01g002510.3.5C.1 ID=BraA01g002510.3.5C.1|Name=BraA01g002510.3.5C.1|organism=Brassica rapa chifu|type=CDS|length=849bp|location=Sequence derived from alignment at A01:1265195..1266998- (Brassica rapa chifu)
ATGTCTACACATGATTCATCATCAAGAGAAGCCCTTGAGATAGAATTTGG
TTTACTGCAAGTGGATTATGATTTACAAGCTGAGCTGCTGGATAGGGTCA
AATCAGCTGCAACCAGCTTACACTATTTGAGGTCAAAAGCTACCATCTTG
GCTGAAGAGGTAGAGCTAGAAGATGATGGTTCAGTTTCTGAAGTGGACAA
GGACATCATCAGTCTTCTGACTTTTACTAGAACTAGCAAGAACCAAGACT
CCTTGGTTGTTACAGAGGATGGAGCTATGCTCCAGTCCATACAGATGATT
GCTGATGTGCTGGAGTCTCTTCTGAGGAGAGTCACCGCAGCAGAATCTGA
AGCCTCGTTTCAAAAGGAGAGGGTGATTATCGGCGAGGAAGAGATTAGAA
GGAAGACGATTCAAATCGAGAATATGTCATTGAGGTTAGAAGAGATGAAA
CAGATTGTACATGAGAATAAAGATGTTCTCGATGAAACAGTGGAGATAAT
TAAGAAACTGGTTGAAGATAGTAGGAAGGATAGAGAGAAAGCTGTTGAGA
ATGAAGAGGAGCTCCGTCGTGTGAAGACAGAGTTTGAGTCGCTTAGAAAT
TATGTTAATACTTCCACCAATGTTGTGGAAACACTTCTTTCATCGGAGAG
GCAGTTCCAAACTATCGAAGCACGGCTGGTTGCTAAGTCTGCACAGCTGG
AAGGCGAGAAGGCGCAGAAAGAGGTAGAAGTTCAAAAGCTGATGGAGGAG
AACGTGAAGCTAACCGCTCTTCTTGACAATAAAGAAGCGCAGCTTCAAGC
CTTGAATGAACAATGCAAAGTCATGGCTTTGAATGCTTCAAACTTCTGA
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