BraA01g001100.3.5C.22 (mRNA) Brassica rapa chifu

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBraA01g001100.3.5C.22
Unique NameBraA01g001100.3.5C.22
TypemRNA
OrganismBrassica rapa chifu (field mustard)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A01contigA01:531696..535224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica rapa chifu OGS3.52021-11-28
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BraA01g001100.3.5CBraA01g001100.3.5CBrassica rapa chifugeneA01 531554..535325 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BraA01g001100.3.5C.22.utr5p1BraA01g001100.3.5C.22.utr5p1Brassica rapa chifufive_prime_UTRA01 531696..531805 +
BraA01g001100.3.5C.22.utr5p2BraA01g001100.3.5C.22.utr5p2Brassica rapa chifufive_prime_UTRA01 531893..532907 +
BraA01g001100.3.5C.22.utr5p3BraA01g001100.3.5C.22.utr5p3Brassica rapa chifufive_prime_UTRA01 533001..533019 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BraA01g001100.3.5C.22.exon1BraA01g001100.3.5C.22.exon1Brassica rapa chifuexonA01 531696..531805 +
BraA01g001100.3.5C.22.exon2BraA01g001100.3.5C.22.exon2Brassica rapa chifuexonA01 531893..532907 +
BraA01g001100.3.5C.22.exon3BraA01g001100.3.5C.22.exon3Brassica rapa chifuexonA01 533001..533085 +
BraA01g001100.3.5C.22.exon4BraA01g001100.3.5C.22.exon4Brassica rapa chifuexonA01 533170..533270 +
BraA01g001100.3.5C.22.exon5BraA01g001100.3.5C.22.exon5Brassica rapa chifuexonA01 533345..533643 +
BraA01g001100.3.5C.22.exon6BraA01g001100.3.5C.22.exon6Brassica rapa chifuexonA01 533726..533899 +
BraA01g001100.3.5C.22.exon7BraA01g001100.3.5C.22.exon7Brassica rapa chifuexonA01 534125..534803 +
BraA01g001100.3.5C.22.exon8BraA01g001100.3.5C.22.exon8Brassica rapa chifuexonA01 534879..535224 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
cds.BraA01g001100.3.5C.22cds.BraA01g001100.3.5C.22Brassica rapa chifuCDSA01 533020..533085 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BraA01g001100.3.5C.22.utr3p1BraA01g001100.3.5C.22.utr3p1Brassica rapa chifuthree_prime_UTRA01 534244..534803 +
BraA01g001100.3.5C.22.utr3p2BraA01g001100.3.5C.22.utr3p2Brassica rapa chifuthree_prime_UTRA01 534879..535224 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BraA01g001100.3.5C.22BraA01g001100.3.5C.22-P1Brassica rapa chifupolypeptideA01 533020..534243 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BraA01g001100.3.5C.22 ID=BraA01g001100.3.5C.22|Name=BraA01g001100.3.5C.22|organism=Brassica rapa chifu|type=mRNA|length=2809bp|location=Sequence derived from alignment at A01:531696..535224+ (Brassica rapa chifu)|Notes=Excludes all bases but those of type(s): exon.  
GCATCATTTCATCGTCTCTTCCATACACTTCAAATGATCTTCTCCTCTGA
TCATTAATCTCTTTAATCTTTCTCAAGTCTTCTTGTTCGTGATCTCTCTT
CCTTCCCCCGGTAACGGAAAAAGATGTCGGCAGGTAACGGAAATGCTAAC
GGTGACGGAGGCTTCAGCTTCCCTAAAGGACCAGCGATGCCGAAGATAAC
GACGGGAGCTAAGAGGGGTAGCGAAATATGCCACGATGACAGTGGTCCGA
CGGTGAAGGCGACGACGATCGATGAGCTTCACTCGTTGCAGAAGAAGCGT
TCTGCTCCCACCACACCTATTAACCAGAGCGGCGCCGCCGCTTTCGCCGC
CGTCTCGGAGGAAGAGCGCCAGAAGATTCAACTCCAGTCTATCAGGTCCA
TTATTAACACATGACGTTACAAATTTTTATAACCATTTTCTTGGCTGTTT
TCTTTATTTTAAAAAAAATTATATCGAATTAAACAAGATATTGCGTTTTC
GTGTCCATCATTTTCATAAAAAACAGAACAAAATCAGGAGTTTTGTTTTC
TTATTTTTAGAATTGTCTATAGCCAGATATATTTATATTTAATTTATTAA
AAAAATATCTAAGCGTTACTCGTTTTACGTTTTTTACTCAATATGTTATT
TATTTTGTTGTACGGATTATTTAAAGAGAATTTAATGCGCCACAGCGACA
GTTACCCGATGAAATATTTAAGTACATGACACGTGTAATAAATTGACACG
TAACTTTAATTTTGACGCACATAGTGCATCATTGGCGTCGTTGACGAGAG
AGTCTGGACCCAAAGTGGTGAGAGGAGATCCGGCGGAGAAGAAGGCCGAC
GGTTCAACTACTCCGGCGTACGCACACGGCCAGCATCACTCCATCTTCTC
TCCGGACTTAGGAGCAGTCAGTGACAGCTCCTTGAAATTCACCCACGTCC
TCTACAACCTCTCCCCTGCAGAGCTCTACGAGCAGGCTATCAAGTACGAG
AAAGGCTCGTTCATCACTTCCAATGGAGCTCTGGCGACTCTTTCCGGTGC
GAAAACTGGTCGTGCTCCGAGGGATAAGCGTGTCGTTAGAGATGCCACGA
CAGAGGGCGAGCTTTGGTGGGGAAAGGGTTCGCCTAATATCGAGATGGAT
GAACATACCTTCATGGTGAACAGAGAAAGAGCTGTTGATTACTTGAACTC
CTTGGAAAAGGTGTTTGTGAATGATCAGTTCTTGAACTGGGACCCGGAGA
ACAGAATCAAAGTCAGAATCGTCTCAGCTAGAGCTTACCACTCTCTCTTC
ATGCACAACATGTGTATCCGACCAACTCCCGAGGAGCTTGAGAGCTTCGG
TACTCCGGACTTCACTATATACAACGCTGGGCAGTTTCCGTGTAACCGTT
ACACTCACTACATGACTTCCTCCACTAGCGTAGACCTGAATCTCAGTAGG
AGGGAGATGGTTATACTGGGAACTCAGTATGCTGGTGAGATGAAGAAGGG
TCTCTTCAGCGTGATGCATTACCTTATGCCTAAGCGTCGGATCCTCTCCC
TTCACTCTGGTTGCAATATGGGCAAAGAGGGAGATGTTGCTCTCTTCTTT
GGACTCTCAGGGACTGGGAAGACAACGCTGTCTACTGATCACAACAGGTA
CCTGATAGGAGATGATGAGCACTGTTGGACTGAGACTGGTGTCTCGAACA
TTGAGGGTGGATGCTATGCTAAGTGCGTTGATCTTTCTAGGGAGAAGGAG
CCTGATATCTGGAACGCTATCAAGTTTGGAACAGTTTTGGAAAATGTTGT
GTTTGATGAGCACACCAGAGAAGTGGATTATTCTGATAAATCCGTTACCG
GTAAAAAAATAAATAATGTTTTTCTTATTTTTTTTCTCAACTTTTTTTTT
TAACAATCAACCGAATGATCATCGTTGATTCTCCTTGTCTTGCAGAGAAC
ACACGTGCTGCTTACCCTATTGAGTTCATTCCAAACGCGAAAATACCTTG
CGTTGGTCCACACCCCAAGAATGTGATTCTTCTGGCATGTGATGCCTTTG
GTGTTCTCCCACCTGTGAGCAAGCTGAACCTGGCGCAAACCATGTACCAC
TTCATTAGTGGTTACACTGCTCTGGTTGCTGGGACAGAGGACGGTATCAA
GGAGCCAACAGCTACATTCTCAGCATGCTTTGGTGCAGCTTTCATAATGC
TGCATCCTACAAAGTACGCAGCTATGTTGGCCGAGAAGATGAAGACGCAA
GGCGCTACTGGATGGCTCGTTAACACTGGTTGGTCCGGTGGCAGCTATGG
AGTTGGAAACAGGATCAAGCTGGCGTATACTAGGAAGATCATCGATGCAA
TCCATTCAGGTAGCTTGTTGAAGGCGAACTACAAGAAGACGGAGATATTT
GGGTTTGAAATCCCAACTGAGATCGAAGGGATACCTTCAGAGATCTTGGA
TCCGATCAACTCGTGGTCTGATAAGAAAGCACATAAGGAGACTCTGTTGA
AGCTGGGAGGTTTGTTCAAGAAGAACTTTGAGACGTTCGCTAACCACAAG
ATTGGTGTGGATGGTAAGCTCACGGAGGAGATTCTCGCTGCTGGTCCTAT
CTTTTAAGAGAGAACTACTATGATGTTGTCGAAACAAACAAGAAGAAGAT
ATTATCAAGAATAAAATGTGACTTGTGTGTTGTATCTCTTTGTCCGAGTT
ATTTTATATGAAGTGGTTACTTTCGAGCAAAAGAACTTCCAAATATGGTG
GATATGAAATATGACCTTATGTTATTTGATTTTCATATATTGTCGTCATT
TATTTTTTC
back to top

protein sequence of BraA01g001100.3.5C.22

>BraA01g001100.3.5C.22-P1 ID=BraA01g001100.3.5C.22-P1|Name=BraA01g001100.3.5C.22|organism=Brassica rapa chifu|type=polypeptide|length=253bp
MDEHTFMVNRERAVDYLNSLEKVFVNDQFLNWDPENRIKVRIVSARAYHS
LFMHNMCIRPTPEELESFGTPDFTIYNAGQFPCNRYTHYMTSSTSVDLNL
SRREMVILGTQYAGEMKKGLFSVMHYLMPKRRILSLHSGCNMGKEGDVAL
FFGLSGTGKTTLSTDHNRYLIGDDEHCWTETGVSNIEGGCYAKCVDLSRE
KEPDIWNAIKFGTVLENVVFDEHTREVDYSDKSVTGKKINNVFLIFFLNF
FF.
back to top

mRNA from alignment at A01:531696..535224+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>BraA01g001100.3.5C.22 ID=BraA01g001100.3.5C.22|Name=BraA01g001100.3.5C.22|organism=Brassica rapa chifu|type=mRNA|length=3529bp|location=Sequence derived from alignment at A01:531696..535224+ (Brassica rapa chifu)
GCATCATTTCATCGTCTCTTCCATACACTTCAAATGATCTTCTCCTCTGA
TCATTAATCTCTTTAATCTTTCTCAAGTCTTCTTGTTCGTGATCTCTCTT
CCTTCCCCCGGTAATAATAATTAACGTCGACAGTGATTTGTAACTACAGT
GTAACGTTCAGACTTAGGAGTTAATAAGTTTTTGTCTGTTGTTGTAGGTA
ACGGAAAAAGATGTCGGCAGGTAACGGAAATGCTAACGGTGACGGAGGCT
TCAGCTTCCCTAAAGGACCAGCGATGCCGAAGATAACGACGGGAGCTAAG
AGGGGTAGCGAAATATGCCACGATGACAGTGGTCCGACGGTGAAGGCGAC
GACGATCGATGAGCTTCACTCGTTGCAGAAGAAGCGTTCTGCTCCCACCA
CACCTATTAACCAGAGCGGCGCCGCCGCTTTCGCCGCCGTCTCGGAGGAA
GAGCGCCAGAAGATTCAACTCCAGTCTATCAGGTCCATTATTAACACATG
ACGTTACAAATTTTTATAACCATTTTCTTGGCTGTTTTCTTTATTTTAAA
AAAAATTATATCGAATTAAACAAGATATTGCGTTTTCGTGTCCATCATTT
TCATAAAAAACAGAACAAAATCAGGAGTTTTGTTTTCTTATTTTTAGAAT
TGTCTATAGCCAGATATATTTATATTTAATTTATTAAAAAAATATCTAAG
CGTTACTCGTTTTACGTTTTTTACTCAATATGTTATTTATTTTGTTGTAC
GGATTATTTAAAGAGAATTTAATGCGCCACAGCGACAGTTACCCGATGAA
ATATTTAAGTACATGACACGTGTAATAAATTGACACGTAACTTTAATTTT
GACGCACATAGTGCATCATTGGCGTCGTTGACGAGAGAGTCTGGACCCAA
AGTGGTGAGAGGAGATCCGGCGGAGAAGAAGGCCGACGGTTCAACTACTC
CGGCGTACGCACACGGCCAGCATCACTCCATCTTCTCTCCGGACTTAGGA
GCAGTCAGTGACAGCTCCTTGAAATTCACCCACGTCCTCTACAACCTCTC
CCCTGCAGAGCTCTACGAGCAGGCTATCAAGTACGAGAAAGGCTCGTTCA
TCACTTCCAATGGAGCTCTGGCGACTCTTTCCGGTGCGAAAACTGGTCGT
GCTCCGAGGGATAAGCGTGTCGTTAGAGATGCCACGACAGAGGGCGAGCT
TTGGTGGGGAAAGTGAGTATTATCCTCTGTTTTCCTCTGTTTTCCTCTGT
TTCAGTTTTTGATGGAATGTTCAAAGATTTGATCTTTTTCGAAATTTTGA
ATTAGGGGTTCGCCTAATATCGAGATGGATGAACATACCTTCATGGTGAA
CAGAGAAAGAGCTGTTGATTACTTGAACTCCTTGGAAAAGGTATAAACTT
GAAACACAACCTCTGTAAGCTTTTGAGTTTTGGTCTTAGTTAATGAACTA
GCTGTTACTGTTTGGGGTTGTTAGGTGTTTGTGAATGATCAGTTCTTGAA
CTGGGACCCGGAGAACAGAATCAAAGTCAGAATCGTCTCAGCTAGAGCTT
ACCACTCTCTCTTCATGCACAACATGTAAGTCAAAACACCTTTCCTTTTA
TTGTTTACAAACAACAATGTGTCCCCCTCTTGATTCCGCCGTTGGGCAGG
TGTATCCGACCAACTCCCGAGGAGCTTGAGAGCTTCGGTACTCCGGACTT
CACTATATACAACGCTGGGCAGTTTCCGTGTAACCGTTACACTCACTACA
TGACTTCCTCCACTAGCGTAGACCTGAATCTCAGTAGGAGGGAGATGGTT
ATACTGGGAACTCAGTATGCTGGTGAGATGAAGAAGGGTCTCTTCAGCGT
GATGCATTACCTTATGCCTAAGCGTCGGATCCTCTCCCTTCACTCTGGTT
GCAATATGGGCAAAGAGGGAGATGTTGCTCTCTTCTTTGGACTCTCAGGT
ATAGTGGTAGTGTGGTGGTGAAGGGAAGAAGATAAGGGACTGCGGTTGAG
ATTGATGGTTGTTTTGTTTTTTTGTTTCAGGGACTGGGAAGACAACGCTG
TCTACTGATCACAACAGGTACCTGATAGGAGATGATGAGCACTGTTGGAC
TGAGACTGGTGTCTCGAACATTGAGGGTGGATGCTATGCTAAGTGCGTTG
ATCTTTCTAGGGAGAAGGAGCCTGATATCTGGAACGCTATCAAGTTTGGA
ACAGGTAAAGAACACACAAATCTATTGGATTGTTTAATTTTGATAATTCA
TCACAATAACTTTATAATTAAACTTAAAAACTAAAAATGTCATATAAATG
TATAAAATATATAAAACAAATCTACAATTTGCTAACGCATGCCTAGCCGG
TAGTCCTCTATAAAGCGGCTAGCGATTTTTAGAACATTGGAGATAACAAT
AGAGTTTTTTTGTTTATCTTTGTATGCAGTTTTGGAAAATGTTGTGTTTG
ATGAGCACACCAGAGAAGTGGATTATTCTGATAAATCCGTTACCGGTAAA
AAAATAAATAATGTTTTTCTTATTTTTTTTCTCAACTTTTTTTTTTAACA
ATCAACCGAATGATCATCGTTGATTCTCCTTGTCTTGCAGAGAACACACG
TGCTGCTTACCCTATTGAGTTCATTCCAAACGCGAAAATACCTTGCGTTG
GTCCACACCCCAAGAATGTGATTCTTCTGGCATGTGATGCCTTTGGTGTT
CTCCCACCTGTGAGCAAGCTGAACCTGGCGCAAACCATGTACCACTTCAT
TAGTGGTTACACTGCTCTGGTTGCTGGGACAGAGGACGGTATCAAGGAGC
CAACAGCTACATTCTCAGCATGCTTTGGTGCAGCTTTCATAATGCTGCAT
CCTACAAAGTACGCAGCTATGTTGGCCGAGAAGATGAAGACGCAAGGCGC
TACTGGATGGCTCGTTAACACTGGTTGGTCCGGTGGCAGCTATGGAGTTG
GAAACAGGATCAAGCTGGCGTATACTAGGAAGATCATCGATGCAATCCAT
TCAGGTAGCTTGTTGAAGGCGAACTACAAGAAGACGGAGATATTTGGGTT
TGAAATCCCAACTGAGATCGAAGGGATACCTTCAGAGATCTTGGATCCGA
TCAACTCGGTTAGTTTCTGCCAAAAAACTCTCTTTAACTTGTTAGAATTG
GTAGCTGATGATGAATGATATTTGTTTTTGCAGTGGTCTGATAAGAAAGC
ACATAAGGAGACTCTGTTGAAGCTGGGAGGTTTGTTCAAGAAGAACTTTG
AGACGTTCGCTAACCACAAGATTGGTGTGGATGGTAAGCTCACGGAGGAG
ATTCTCGCTGCTGGTCCTATCTTTTAAGAGAGAACTACTATGATGTTGTC
GAAACAAACAAGAAGAAGATATTATCAAGAATAAAATGTGACTTGTGTGT
TGTATCTCTTTGTCCGAGTTATTTTATATGAAGTGGTTACTTTCGAGCAA
AAGAACTTCCAAATATGGTGGATATGAAATATGACCTTATGTTATTTGAT
TTTCATATATTGTCGTCATTTATTTTTTC
back to top

Coding sequence (CDS) from alignment at A01:531696..535224+

>BraA01g001100.3.5C.22 ID=BraA01g001100.3.5C.22|Name=BraA01g001100.3.5C.22|organism=Brassica rapa chifu|type=CDS|length=759bp|location=Sequence derived from alignment at A01:531696..535224+ (Brassica rapa chifu)
ATGGATGAACATACCTTCATGGTGAACAGAGAAAGAGCTGTTGATTACTT
GAACTCCTTGGAAAAGGTGTTTGTGAATGATCAGTTCTTGAACTGGGACC
CGGAGAACAGAATCAAAGTCAGAATCGTCTCAGCTAGAGCTTACCACTCT
CTCTTCATGCACAACATGTGTATCCGACCAACTCCCGAGGAGCTTGAGAG
CTTCGGTACTCCGGACTTCACTATATACAACGCTGGGCAGTTTCCGTGTA
ACCGTTACACTCACTACATGACTTCCTCCACTAGCGTAGACCTGAATCTC
AGTAGGAGGGAGATGGTTATACTGGGAACTCAGTATGCTGGTGAGATGAA
GAAGGGTCTCTTCAGCGTGATGCATTACCTTATGCCTAAGCGTCGGATCC
TCTCCCTTCACTCTGGTTGCAATATGGGCAAAGAGGGAGATGTTGCTCTC
TTCTTTGGACTCTCAGGGACTGGGAAGACAACGCTGTCTACTGATCACAA
CAGGTACCTGATAGGAGATGATGAGCACTGTTGGACTGAGACTGGTGTCT
CGAACATTGAGGGTGGATGCTATGCTAAGTGCGTTGATCTTTCTAGGGAG
AAGGAGCCTGATATCTGGAACGCTATCAAGTTTGGAACAGTTTTGGAAAA
TGTTGTGTTTGATGAGCACACCAGAGAAGTGGATTATTCTGATAAATCCG
TTACCGGTAAAAAAATAAATAATGTTTTTCTTATTTTTTTTCTCAACTTT
TTTTTTTAA
back to top