BraA01g000220.3.5C.6 (mRNA) Brassica rapa chifu

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBraA01g000220.3.5C.6
Unique NameBraA01g000220.3.5C.6
TypemRNA
OrganismBrassica rapa chifu (field mustard)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A01contigA01:105964..108309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica rapa chifu OGS3.52021-11-28
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BraA01g000220.3.5CBraA01g000220.3.5CBrassica rapa chifugeneA01 105936..108344 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BraA01g000220.3.5C.6.exon7BraA01g000220.3.5C.6.exon7Brassica rapa chifuexonA01 105964..106434 -
BraA01g000220.3.5C.6.exon6BraA01g000220.3.5C.6.exon6Brassica rapa chifuexonA01 106590..106721 -
BraA01g000220.3.5C.6.exon5BraA01g000220.3.5C.6.exon5Brassica rapa chifuexonA01 106799..106937 -
BraA01g000220.3.5C.6.exon4BraA01g000220.3.5C.6.exon4Brassica rapa chifuexonA01 107031..107121 -
BraA01g000220.3.5C.6.exon3BraA01g000220.3.5C.6.exon3Brassica rapa chifuexonA01 107207..107327 -
BraA01g000220.3.5C.6.exon2BraA01g000220.3.5C.6.exon2Brassica rapa chifuexonA01 107527..107689 -
BraA01g000220.3.5C.6.exon1BraA01g000220.3.5C.6.exon1Brassica rapa chifuexonA01 108022..108309 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BraA01g000220.3.5C.6.utr3p5BraA01g000220.3.5C.6.utr3p5Brassica rapa chifuthree_prime_UTRA01 105964..106434 -
BraA01g000220.3.5C.6.utr3p4BraA01g000220.3.5C.6.utr3p4Brassica rapa chifuthree_prime_UTRA01 106590..106721 -
BraA01g000220.3.5C.6.utr3p3BraA01g000220.3.5C.6.utr3p3Brassica rapa chifuthree_prime_UTRA01 106799..106937 -
BraA01g000220.3.5C.6.utr3p2BraA01g000220.3.5C.6.utr3p2Brassica rapa chifuthree_prime_UTRA01 107031..107121 -
BraA01g000220.3.5C.6.utr3p1BraA01g000220.3.5C.6.utr3p1Brassica rapa chifuthree_prime_UTRA01 107207..107316 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
cds.BraA01g000220.3.5C.6cds.BraA01g000220.3.5C.6Brassica rapa chifuCDSA01 108022..108198 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BraA01g000220.3.5C.6.utr5p1BraA01g000220.3.5C.6.utr5p1Brassica rapa chifufive_prime_UTRA01 108199..108309 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BraA01g000220.3.5C.6BraA01g000220.3.5C.6-P1Brassica rapa chifupolypeptideA01 107317..108198 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BraA01g000220.3.5C.6 ID=BraA01g000220.3.5C.6|Name=BraA01g000220.3.5C.6|organism=Brassica rapa chifu|type=mRNA|length=1405bp|location=Sequence derived from alignment at A01:105964..108309- (Brassica rapa chifu)|Notes=Excludes all bases but those of type(s): exon.  
AGAGATAAGGTGGTGGTGTGTGTGTGTGTCATCATTCATAAGCCACTGTG
TGTCTCTCGAACAAACCAAATTAAGGCAGAGAGAAGAGAAAGAGATAACA
TTTAACAAAAGATGGCATCAACATCACTCCTCAAGGCATCTCCTGTGTTG
GACAAATCGGAGTGGGTCAAGGGACAAAGCGTTCTCTTCCGTCAGCCATC
TTCCGCCGCCGTCGTCATACGTAACCGCGCCACCTCCCTTACCGTCCGTG
CCGCTTCTTCCTACGCCGATGAGCTTGTTAAGACAGCGAAAACAATTGCG
TCTCCTGGACGAGGAATCTTGGCGATGGACGAGTCGAACGCGACTTGCGG
GAAGCGTTTGGACTCGATAGGGCTAGAGAACACTGAGGCAAACCGACAAG
CATACAGGACATTGCTGGTCTCTGCACCAGGACTCGGACAGTACATCTCC
GTATGGAAGTAGGGTTTGGTCCCACTTGTTGGCTCTAACAATGAGTCATG
GTGCCAAGGGCTCGATGGTCTATCCTCCCGAACTGCTGCTTACTATCAAC
AGGGTGCTCGTTTCGCCAAATGGCGTACTGTCGTGAGCATTCCCAATGGT
CCGTCTGCTCTAGCTGTTAAAGAAGCTGCTTGGGGCCTTGCCCGATACGC
TGCCATTTCACAAGACAGTGGATTGGTTCCAATAGTGGAGCCAGAGATAT
TGTTGGACGGAGAACACGACATTGACAGGACTTACGAAGTAGCAGAGAAG
GTTTGGGCTGAGGTTTTCTTTTACCTTGCTCAGAACAATGTCATGTTTGA
AGGTATTCTCCTGAAGCCGAGCATGGTGACTCCCGGAGCCGAGTCTAAAG
ACAGAGCTACTCCTGAACAAGTTGCCTCCTACACCCTTAAACTCCTCCGC
AACAGAATCCCTCCGGCCGTCCCCGGAATCATGGTTCTTGTCGGGAGGAC
AGTCTGAGTTGGAGGCAACGTTGAACCTGAACGCGATGAACCAAGCACCA
AACCCGTGGCATGTATCCTTCTCCTACGCACGTGCCCTGCAGAACACATG
TTTGAAAACATGGGGAGGCAGAGCTGAGAACGTGAACGCAGCTCAGACCA
CTCTATTGGCTAGAGCCAAGGCCAATTCGCTGGCTCAGCTTGGAAAATAC
ACAGGAGAAGGTGAGTCTGAAGAGGCTAAGGAGGGTATGTTCGTCAAAGG
CTACACCTATTGAAGAGAATAATTAATGATGCTGTGAAATTGGAGACGAA
GGCCGATTATGTTTTGATTGCATCTGTATTTGAGTTGGGTTGTCCTTATA
AATATGTCAAAAACATTTTATTTTGTCTGGTTAATTTGCATTAGCTACTC
CTTTAATAAGTTTTTGTTTTTTCTGATATATATATATATATTGATGAAGT
TATCT
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protein sequence of BraA01g000220.3.5C.6

>BraA01g000220.3.5C.6-P1 ID=BraA01g000220.3.5C.6-P1|Name=BraA01g000220.3.5C.6|organism=Brassica rapa chifu|type=polypeptide|length=117bp
MASTSLLKASPVLDKSEWVKGQSVLFRQPSSAAVVIRNRATSLTVRAASS
YADELVKTAKTIASPGRGILAMDESNATCGKRLDSIGLENTEANRQAYRT
LLVSAPGLGQYISVWK.
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mRNA from alignment at A01:105964..108309-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>BraA01g000220.3.5C.6 ID=BraA01g000220.3.5C.6|Name=BraA01g000220.3.5C.6|organism=Brassica rapa chifu|type=mRNA|length=2346bp|location=Sequence derived from alignment at A01:105964..108309- (Brassica rapa chifu)
AGAGATAAGGTGGTGGTGTGTGTGTGTGTCATCATTCATAAGCCACTGTG
TGTCTCTCGAACAAACCAAATTAAGGCAGAGAGAAGAGAAAGAGATAACA
TTTAACAAAAGATGGCATCAACATCACTCCTCAAGGCATCTCCTGTGTTG
GACAAATCGGAGTGGGTCAAGGGACAAAGCGTTCTCTTCCGTCAGCCATC
TTCCGCCGCCGTCGTCATACGTAACCGCGCCACCTCCCTTACCGTCCGTG
CCGCTTCTTCCTACGCCGATGAGCTTGTTAAGACAGCGGTTAGTACTCCC
ACCCACACATATCCTCTTCTTTGTCACGTGTCTTATCTGCAGGATACATA
AAGGTTTTTTACTTCTTTTACTTCTTTTATTCTTTTGATCTTTTGAATTG
GAATGCCTAACAAAATTAATTATGTTCTATTTTCAATTCTTTTTTTATTA
ATTTGTAGTCTTAACTTTTCTTTCTTTTCACAACCATTTTTTCACTAGTT
GGGACTTTGGGTTGATTTTAGTTCATGTTTGTTAATATAAGAGCTCATAT
TCATAGATAAAAGTTAGTATAAAATAACTCGAATTACGATAATAATGATG
TTTTATGGTGTTGGGAGCAGAAAACAATTGCGTCTCCTGGACGAGGAATC
TTGGCGATGGACGAGTCGAACGCGACTTGCGGGAAGCGTTTGGACTCGAT
AGGGCTAGAGAACACTGAGGCAAACCGACAAGCATACAGGACATTGCTGG
TCTCTGCACCAGGACTCGGACAGTACATCTCCGGTGCAATCCTGTTCGAG
GAGACTCTGTATCAGTCGACAACCGAAGGCAAGAAAATGGTCGACGTCCT
CGTCGAGCAGAACATCGTCCCCGGTATCAAAGTCGACAAGGTATGACTAA
TTAAAGTGCATGCTTATTTTTTATATATATGTACCTAACGTGGTGCTTGA
TTAGAGGAATCTAATTGCGAGTTGTATCTATTTATGGAAGTAGGGTTTGG
TCCCACTTGTTGGCTCTAACAATGAGTCATGGTGCCAAGGGCTCGATGGT
CTATCCTCCCGAACTGCTGCTTACTATCAACAGGGTGCTCGTTTCGCCAA
ATGGTATAGTACCCTCTGTTCCTATCCAAAATGTTTCCTCTCGGCTGAGT
TTTTTCTTTGACTTTTGTACTCTTGATGGTTTAATTAGGCGTACTGTCGT
GAGCATTCCCAATGGTCCGTCTGCTCTAGCTGTTAAAGAAGCTGCTTGGG
GCCTTGCCCGATACGCTGCCATTTCACAAGTAAACACACATTGCTTCTCT
TTCAAGCAACAGGTCAACTCGGATTCTTTTAAAGCTATTATTTCACACGC
AGATTGTGTTTTGTCTATTCAGGACAGTGGATTGGTTCCAATAGTGGAGC
CAGAGATATTGTTGGACGGAGAACACGACATTGACAGGACTTACGAAGTA
GCAGAGAAGGTTTGGGCTGAGGTTTTCTTTTACCTTGCTCAGAACAATGT
CATGTTTGAAGGTATTACTAGCTAAGTATATGGAGCTGCTTATCTTATAT
TATCAAGTTGTGTTAAAATATCAACATCTTGTACAAAGGTATTCTCCTGA
AGCCGAGCATGGTGACTCCCGGAGCCGAGTCTAAAGACAGAGCTACTCCT
GAACAAGTTGCCTCCTACACCCTTAAACTCCTCCGCAACAGAATCCCTCC
GGCCGTCCCCGGAATCATGGCAAGCTCTATTCCTCTCTCTTCACTTCACA
TAGTATAAAAATATCTATAAAAATCAAAATATTGCTTGATTTGATGGAAA
TTGCTTATGATGAGAACCCTAGATCTTGGTTGCTTGAGATGGAAGTAAAG
TTTTTTTTTTGTTTTGGTTTTGCAGTTCTTGTCGGGAGGACAGTCTGAGT
TGGAGGCAACGTTGAACCTGAACGCGATGAACCAAGCACCAAACCCGTGG
CATGTATCCTTCTCCTACGCACGTGCCCTGCAGAACACATGTTTGAAAAC
ATGGGGAGGCAGAGCTGAGAACGTGAACGCAGCTCAGACCACTCTATTGG
CTAGAGCCAAGGCCAATTCGCTGGCTCAGCTTGGAAAATACACAGGAGAA
GGTGAGTCTGAAGAGGCTAAGGAGGGTATGTTCGTCAAAGGCTACACCTA
TTGAAGAGAATAATTAATGATGCTGTGAAATTGGAGACGAAGGCCGATTA
TGTTTTGATTGCATCTGTATTTGAGTTGGGTTGTCCTTATAAATATGTCA
AAAACATTTTATTTTGTCTGGTTAATTTGCATTAGCTACTCCTTTAATAA
GTTTTTGTTTTTTCTGATATATATATATATATTGATGAAGTTATCT
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Coding sequence (CDS) from alignment at A01:105964..108309-

>BraA01g000220.3.5C.6 ID=BraA01g000220.3.5C.6|Name=BraA01g000220.3.5C.6|organism=Brassica rapa chifu|type=CDS|length=351bp|location=Sequence derived from alignment at A01:105964..108309- (Brassica rapa chifu)
ATGGCATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGA
GTGGGTCAAGGGACAAAGCGTTCTCTTCCGTCAGCCATCTTCCGCCGCCG
TCGTCATACGTAACCGCGCCACCTCCCTTACCGTCCGTGCCGCTTCTTCC
TACGCCGATGAGCTTGTTAAGACAGCGAAAACAATTGCGTCTCCTGGACG
AGGAATCTTGGCGATGGACGAGTCGAACGCGACTTGCGGGAAGCGTTTGG
ACTCGATAGGGCTAGAGAACACTGAGGCAAACCGACAAGCATACAGGACA
TTGCTGGTCTCTGCACCAGGACTCGGACAGTACATCTCCGTATGGAAGTA
G
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