BraA01g000220.3.5C.4 (mRNA) Brassica rapa chifu

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBraA01g000220.3.5C.4
Unique NameBraA01g000220.3.5C.4
TypemRNA
OrganismBrassica rapa chifu (field mustard)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A01contigA01:105963..108294 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica rapa chifu OGS3.52021-11-28
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BraA01g000220.3.5CBraA01g000220.3.5CBrassica rapa chifugeneA01 105936..108344 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BraA01g000220.3.5C.4BraA01g000220.3.5C.4-P1Brassica rapa chifupolypeptideA01 106156..108198 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BraA01g000220.3.5C.4.exon6BraA01g000220.3.5C.4.exon6Brassica rapa chifuexonA01 105963..106434 -
BraA01g000220.3.5C.4.exon5BraA01g000220.3.5C.4.exon5Brassica rapa chifuexonA01 106591..106721 -
BraA01g000220.3.5C.4.exon4BraA01g000220.3.5C.4.exon4Brassica rapa chifuexonA01 106799..107121 -
BraA01g000220.3.5C.4.exon3BraA01g000220.3.5C.4.exon3Brassica rapa chifuexonA01 107207..107316 -
BraA01g000220.3.5C.4.exon2BraA01g000220.3.5C.4.exon2Brassica rapa chifuexonA01 107420..107689 -
BraA01g000220.3.5C.4.exon1BraA01g000220.3.5C.4.exon1Brassica rapa chifuexonA01 108022..108294 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BraA01g000220.3.5C.4.utr3p1BraA01g000220.3.5C.4.utr3p1Brassica rapa chifuthree_prime_UTRA01 105963..106155 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
cds.BraA01g000220.3.5C.4cds.BraA01g000220.3.5C.4Brassica rapa chifuCDSA01 108022..108198 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BraA01g000220.3.5C.4.utr5p1BraA01g000220.3.5C.4.utr5p1Brassica rapa chifufive_prime_UTRA01 108199..108294 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BraA01g000220.3.5C.4 ID=BraA01g000220.3.5C.4|Name=BraA01g000220.3.5C.4|organism=Brassica rapa chifu|type=mRNA|length=1579bp|location=Sequence derived from alignment at A01:105963..108294- (Brassica rapa chifu)|Notes=Excludes all bases but those of type(s): exon.  
GTGTGTGTGTGTGTCATCATTCATAAGCCACTGTGTGTCTCTCGAACAAA
CCAAATTAAGGCAGAGAGAAGAGAAAGAGATAACATTTAACAAAAGATGG
CATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGG
GTCAAGGGACAAAGCGTTCTCTTCCGTCAGCCATCTTCCGCCGCCGTCGT
CATACGTAACCGCGCCACCTCCCTTACCGTCCGTGCCGCTTCTTCCTACG
CCGATGAGCTTGTTAAGACAGCGAAAACAATTGCGTCTCCTGGACGAGGA
ATCTTGGCGATGGACGAGTCGAACGCGACTTGCGGGAAGCGTTTGGACTC
GATAGGGCTAGAGAACACTGAGGCAAACCGACAAGCATACAGGACATTGC
TGGTCTCTGCACCAGGACTCGGACAGTACATCTCCGGTGCAATCCTGTTC
GAGGAGACTCTGTATCAGTCGACAACCGAAGGCAAGAAAATGGTCGACGT
CCTCGTCGAGCAGAACATCGTCCCCGGTATCAAAGTCGACAAGGGTTTGG
TCCCACTTGTTGGCTCTAACAATGAGTCATGGTGCCAAGGGCTCGATGGT
CTATCCTCCCGAACTGCTGCTTACTATCAACAGGGTGCTCGTTTCGCCAA
ATGGCGTACTGTCGTGAGCATTCCCAATGGTCCGTCTGCTCTAGCTGTTA
AAGAAGCTGCTTGGGGCCTTGCCCGATACGCTGCCATTTCACAAGTAAAC
ACACATTGCTTCTCTTTCAAGCAACAGGTCAACTCGGATTCTTTTAAAGC
TATTATTTCACACGCAGATTGTGTTTTGTCTATTCAGGACAGTGGATTGG
TTCCAATAGTGGAGCCAGAGATATTGTTGGACGGAGAACACGACATTGAC
AGGACTTACGAAGTAGCAGAGAAGGTTTGGGCTGAGGTTTTCTTTTACCT
TGCTCAGAACAATGTCATGTTTGAAGGTATTCTCCTGAAGCCGAGCATGG
TGACTCCCGGAGCCGAGTCTAAAGACAGAGCTACTCCTGAACAAGTTGCC
TCCTACACCCTTAAACTCCTCCGCAACAGAATCCCTCCGGCCGTCCCCGG
AATCATGTTCTTGTCGGGAGGACAGTCTGAGTTGGAGGCAACGTTGAACC
TGAACGCGATGAACCAAGCACCAAACCCGTGGCATGTATCCTTCTCCTAC
GCACGTGCCCTGCAGAACACATGTTTGAAAACATGGGGAGGCAGAGCTGA
GAACGTGAACGCAGCTCAGACCACTCTATTGGCTAGAGCCAAGGCCAATT
CGCTGGCTCAGCTTGGAAAATACACAGGAGAAGGTGAGTCTGAAGAGGCT
AAGGAGGGTATGTTCGTCAAAGGCTACACCTATTGAAGAGAATAATTAAT
GATGCTGTGAAATTGGAGACGAAGGCCGATTATGTTTTGATTGCATCTGT
ATTTGAGTTGGGTTGTCCTTATAAATATGTCAAAAACATTTTATTTTGTC
TGGTTAATTTGCATTAGCTACTCCTTTAATAAGTTTTTGTTTTTTCTGAT
ATATATATATATATTGATGAAGTTATCTC
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protein sequence of BraA01g000220.3.5C.4

>BraA01g000220.3.5C.4-P1 ID=BraA01g000220.3.5C.4-P1|Name=BraA01g000220.3.5C.4|organism=Brassica rapa chifu|type=polypeptide|length=430bp
MASTSLLKASPVLDKSEWVKGQSVLFRQPSSAAVVIRNRATSLTVRAASS
YADELVKTAKTIASPGRGILAMDESNATCGKRLDSIGLENTEANRQAYRT
LLVSAPGLGQYISGAILFEETLYQSTTEGKKMVDVLVEQNIVPGIKVDKG
LVPLVGSNNESWCQGLDGLSSRTAAYYQQGARFAKWRTVVSIPNGPSALA
VKEAAWGLARYAAISQVNTHCFSFKQQVNSDSFKAIISHADCVLSIQDSG
LVPIVEPEILLDGEHDIDRTYEVAEKVWAEVFFYLAQNNVMFEGILLKPS
MVTPGAESKDRATPEQVASYTLKLLRNRIPPAVPGIMFLSGGQSELEATL
NLNAMNQAPNPWHVSFSYARALQNTCLKTWGGRAENVNAAQTTLLARAKA
NSLAQLGKYTGEGESEEAKEGMFVKGYTY.
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mRNA from alignment at A01:105963..108294-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>BraA01g000220.3.5C.4 ID=BraA01g000220.3.5C.4|Name=BraA01g000220.3.5C.4|organism=Brassica rapa chifu|type=mRNA|length=2332bp|location=Sequence derived from alignment at A01:105963..108294- (Brassica rapa chifu)
GTGTGTGTGTGTGTCATCATTCATAAGCCACTGTGTGTCTCTCGAACAAA
CCAAATTAAGGCAGAGAGAAGAGAAAGAGATAACATTTAACAAAAGATGG
CATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGAGTGG
GTCAAGGGACAAAGCGTTCTCTTCCGTCAGCCATCTTCCGCCGCCGTCGT
CATACGTAACCGCGCCACCTCCCTTACCGTCCGTGCCGCTTCTTCCTACG
CCGATGAGCTTGTTAAGACAGCGGTTAGTACTCCCACCCACACATATCCT
CTTCTTTGTCACGTGTCTTATCTGCAGGATACATAAAGGTTTTTTACTTC
TTTTACTTCTTTTATTCTTTTGATCTTTTGAATTGGAATGCCTAACAAAA
TTAATTATGTTCTATTTTCAATTCTTTTTTTATTAATTTGTAGTCTTAAC
TTTTCTTTCTTTTCACAACCATTTTTTCACTAGTTGGGACTTTGGGTTGA
TTTTAGTTCATGTTTGTTAATATAAGAGCTCATATTCATAGATAAAAGTT
AGTATAAAATAACTCGAATTACGATAATAATGATGTTTTATGGTGTTGGG
AGCAGAAAACAATTGCGTCTCCTGGACGAGGAATCTTGGCGATGGACGAG
TCGAACGCGACTTGCGGGAAGCGTTTGGACTCGATAGGGCTAGAGAACAC
TGAGGCAAACCGACAAGCATACAGGACATTGCTGGTCTCTGCACCAGGAC
TCGGACAGTACATCTCCGGTGCAATCCTGTTCGAGGAGACTCTGTATCAG
TCGACAACCGAAGGCAAGAAAATGGTCGACGTCCTCGTCGAGCAGAACAT
CGTCCCCGGTATCAAAGTCGACAAGGTATGACTAATTAAAGTGCATGCTT
ATTTTTTATATATATGTACCTAACGTGGTGCTTGATTAGAGGAATCTAAT
TGCGAGTTGTATCTATTTATGGAAGTAGGGTTTGGTCCCACTTGTTGGCT
CTAACAATGAGTCATGGTGCCAAGGGCTCGATGGTCTATCCTCCCGAACT
GCTGCTTACTATCAACAGGGTGCTCGTTTCGCCAAATGGTATAGTACCCT
CTGTTCCTATCCAAAATGTTTCCTCTCGGCTGAGTTTTTTCTTTGACTTT
TGTACTCTTGATGGTTTAATTAGGCGTACTGTCGTGAGCATTCCCAATGG
TCCGTCTGCTCTAGCTGTTAAAGAAGCTGCTTGGGGCCTTGCCCGATACG
CTGCCATTTCACAAGTAAACACACATTGCTTCTCTTTCAAGCAACAGGTC
AACTCGGATTCTTTTAAAGCTATTATTTCACACGCAGATTGTGTTTTGTC
TATTCAGGACAGTGGATTGGTTCCAATAGTGGAGCCAGAGATATTGTTGG
ACGGAGAACACGACATTGACAGGACTTACGAAGTAGCAGAGAAGGTTTGG
GCTGAGGTTTTCTTTTACCTTGCTCAGAACAATGTCATGTTTGAAGGTAT
TACTAGCTAAGTATATGGAGCTGCTTATCTTATATTATCAAGTTGTGTTA
AAATATCAACATCTTGTACAAAGGTATTCTCCTGAAGCCGAGCATGGTGA
CTCCCGGAGCCGAGTCTAAAGACAGAGCTACTCCTGAACAAGTTGCCTCC
TACACCCTTAAACTCCTCCGCAACAGAATCCCTCCGGCCGTCCCCGGAAT
CATGGCAAGCTCTATTCCTCTCTCTTCACTTCACATAGTATAAAAATATC
TATAAAAATCAAAATATTGCTTGATTTGATGGAAATTGCTTATGATGAGA
ACCCTAGATCTTGGTTGCTTGAGATGGAAGTAAAGTTTTTTTTTTGTTTT
GGTTTTGCAGTTCTTGTCGGGAGGACAGTCTGAGTTGGAGGCAACGTTGA
ACCTGAACGCGATGAACCAAGCACCAAACCCGTGGCATGTATCCTTCTCC
TACGCACGTGCCCTGCAGAACACATGTTTGAAAACATGGGGAGGCAGAGC
TGAGAACGTGAACGCAGCTCAGACCACTCTATTGGCTAGAGCCAAGGCCA
ATTCGCTGGCTCAGCTTGGAAAATACACAGGAGAAGGTGAGTCTGAAGAG
GCTAAGGAGGGTATGTTCGTCAAAGGCTACACCTATTGAAGAGAATAATT
AATGATGCTGTGAAATTGGAGACGAAGGCCGATTATGTTTTGATTGCATC
TGTATTTGAGTTGGGTTGTCCTTATAAATATGTCAAAAACATTTTATTTT
GTCTGGTTAATTTGCATTAGCTACTCCTTTAATAAGTTTTTGTTTTTTCT
GATATATATATATATATTGATGAAGTTATCTC
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Coding sequence (CDS) from alignment at A01:105963..108294-

>BraA01g000220.3.5C.4 ID=BraA01g000220.3.5C.4|Name=BraA01g000220.3.5C.4|organism=Brassica rapa chifu|type=CDS|length=1290bp|location=Sequence derived from alignment at A01:105963..108294- (Brassica rapa chifu)
ATGGCATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGA
GTGGGTCAAGGGACAAAGCGTTCTCTTCCGTCAGCCATCTTCCGCCGCCG
TCGTCATACGTAACCGCGCCACCTCCCTTACCGTCCGTGCCGCTTCTTCC
TACGCCGATGAGCTTGTTAAGACAGCGAAAACAATTGCGTCTCCTGGACG
AGGAATCTTGGCGATGGACGAGTCGAACGCGACTTGCGGGAAGCGTTTGG
ACTCGATAGGGCTAGAGAACACTGAGGCAAACCGACAAGCATACAGGACA
TTGCTGGTCTCTGCACCAGGACTCGGACAGTACATCTCCGGTGCAATCCT
GTTCGAGGAGACTCTGTATCAGTCGACAACCGAAGGCAAGAAAATGGTCG
ACGTCCTCGTCGAGCAGAACATCGTCCCCGGTATCAAAGTCGACAAGGGT
TTGGTCCCACTTGTTGGCTCTAACAATGAGTCATGGTGCCAAGGGCTCGA
TGGTCTATCCTCCCGAACTGCTGCTTACTATCAACAGGGTGCTCGTTTCG
CCAAATGGCGTACTGTCGTGAGCATTCCCAATGGTCCGTCTGCTCTAGCT
GTTAAAGAAGCTGCTTGGGGCCTTGCCCGATACGCTGCCATTTCACAAGT
AAACACACATTGCTTCTCTTTCAAGCAACAGGTCAACTCGGATTCTTTTA
AAGCTATTATTTCACACGCAGATTGTGTTTTGTCTATTCAGGACAGTGGA
TTGGTTCCAATAGTGGAGCCAGAGATATTGTTGGACGGAGAACACGACAT
TGACAGGACTTACGAAGTAGCAGAGAAGGTTTGGGCTGAGGTTTTCTTTT
ACCTTGCTCAGAACAATGTCATGTTTGAAGGTATTCTCCTGAAGCCGAGC
ATGGTGACTCCCGGAGCCGAGTCTAAAGACAGAGCTACTCCTGAACAAGT
TGCCTCCTACACCCTTAAACTCCTCCGCAACAGAATCCCTCCGGCCGTCC
CCGGAATCATGTTCTTGTCGGGAGGACAGTCTGAGTTGGAGGCAACGTTG
AACCTGAACGCGATGAACCAAGCACCAAACCCGTGGCATGTATCCTTCTC
CTACGCACGTGCCCTGCAGAACACATGTTTGAAAACATGGGGAGGCAGAG
CTGAGAACGTGAACGCAGCTCAGACCACTCTATTGGCTAGAGCCAAGGCC
AATTCGCTGGCTCAGCTTGGAAAATACACAGGAGAAGGTGAGTCTGAAGA
GGCTAAGGAGGGTATGTTCGTCAAAGGCTACACCTATTGA
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