BraAnng004550.3.5C.1-P1 (polypeptide) Brassica rapa chifu

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBraAnng004550.3.5C.1
Unique NameBraAnng004550.3.5C.1-P1
Typepolypeptide
OrganismBrassica rapa chifu (field mustard)
Sequence length122
Homology
BLAST of BraAnng004550.3.5C.1 vs. GenBank_protein
Match: XP_013729821.1 (uncharacterized protein LOC106433536 [Brassica napus] >KAF2549579.1 hypothetical protein F2Q70_00024138 [Brassica cretica] >RID64722.1 hypothetical protein BRARA_E03640 [Brassica rapa] >VDD25009.1 unnamed protein product [Brassica rapa])

HSP 1 Score: 243 bits (619), Expect = 1.330e-78
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0
Query:    1 MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKVV 120
            MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKVV
Sbjct:    1 MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKVV 120          
BLAST of BraAnng004550.3.5C.1 vs. GenBank_protein
Match: XP_009124042.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC103848959 [Brassica rapa])

HSP 1 Score: 241 bits (615), Expect = 5.750e-78
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0
Query:    1 MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKV 119
            MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKV
Sbjct:    1 MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKV 119          
BLAST of BraAnng004550.3.5C.1 vs. GenBank_protein
Match: XP_013584113.1 (PREDICTED: uncharacterized protein LOC106292986 [Brassica oleracea var. oleracea] >KAF3584769.1 hypothetical protein F2Q69_00032583 [Brassica cretica] >KAG2273333.1 hypothetical protein Bca52824_067888 [Brassica carinata])

HSP 1 Score: 240 bits (612), Expect = 1.540e-77
Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 0
Query:    1 MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKVV 120
            MDSL+FNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYE+VV
Sbjct:    1 MDSLQFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYERVV 120          
BLAST of BraAnng004550.3.5C.1 vs. GenBank_protein
Match: KAG5399425.1 (hypothetical protein IGI04_021239 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 239 bits (611), Expect = 2.190e-77
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0
Query:    1 MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKVV 120
            MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNA PDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKVV
Sbjct:    1 MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNARPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKVV 120          
BLAST of BraAnng004550.3.5C.1 vs. GenBank_protein
Match: CAF1793755.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 238 bits (607), Expect = 8.850e-77
Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 0
Query:    1 MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKVV 120
            MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEET+ RPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKVV
Sbjct:    1 MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETETRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKVV 120          
BLAST of BraAnng004550.3.5C.1 vs. GenBank_protein
Match: KAF3612210.1 (hypothetical protein DY000_02051684 [Brassica cretica])

HSP 1 Score: 238 bits (606), Expect = 1.260e-76
Identity = 117/120 (97.50%), Postives = 118/120 (98.33%), Query Frame = 0
Query:    1 MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKVV 120
            MDSLRFNL Q PFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNH+DDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKVV
Sbjct:    1 MDSLRFNLPQYPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHIDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKVV 120          
BLAST of BraAnng004550.3.5C.1 vs. GenBank_protein
Match: KAG2273372.1 (hypothetical protein Bca52824_067927 [Brassica carinata])

HSP 1 Score: 229 bits (585), Expect = 1.930e-73
Identity = 113/120 (94.17%), Postives = 116/120 (96.67%), Query Frame = 0
Query:    1 MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKVV 120
            MDSLRFNLQQSPF LRPRRT+RP I+NISNQTEETDPRP SSAGKIQRLVLNNEGRTKLNA PDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLD+MSSWVSHLPEEVKYEKVV
Sbjct:    1 MDSLRFNLQQSPFHLRPRRTLRPSISNISNQTEETDPRPTSSAGKIQRLVLNNEGRTKLNADPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDMMSSWVSHLPEEVKYEKVV 120          
BLAST of BraAnng004550.3.5C.1 vs. GenBank_protein
Match: KAF8081813.1 (hypothetical protein N665_0866s0018 [Sinapis alba])

HSP 1 Score: 228 bits (581), Expect = 7.820e-73
Identity = 112/120 (93.33%), Postives = 115/120 (95.83%), Query Frame = 0
Query:    1 MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKVV 120
            MDSLRFNLQQSPFQ RPRRT+RPRITNISNQTEE DPRP S AGKIQRLVLNNEGRTKLNA PDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLD+MSSWVSHLP+EVKYEKVV
Sbjct:    1 MDSLRFNLQQSPFQFRPRRTLRPRITNISNQTEENDPRPSSLAGKIQRLVLNNEGRTKLNADPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDMMSSWVSHLPKEVKYEKVV 120          
BLAST of BraAnng004550.3.5C.1 vs. GenBank_protein
Match: XP_018432713.1 (PREDICTED: uncharacterized protein LOC108805226 [Raphanus sativus])

HSP 1 Score: 228 bits (580), Expect = 1.180e-72
Identity = 111/120 (92.50%), Postives = 116/120 (96.67%), Query Frame = 0
Query:    1 MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKVV 120
            MDSLRFNL QSPFQLRPR+T RPRIT+ISNQTEETDPRP SS GKIQRLVLNNEGRTKLN+GPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLD+MSSWVSHLPEEVK+EKVV
Sbjct:    1 MDSLRFNLHQSPFQLRPRKTFRPRITSISNQTEETDPRPTSSPGKIQRLVLNNEGRTKLNSGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDMMSSWVSHLPEEVKFEKVV 120          
BLAST of BraAnng004550.3.5C.1 vs. GenBank_protein
Match: CDY37508.1 (BnaA05g33730D [Brassica napus])

HSP 1 Score: 215 bits (548), Expect = 4.140e-68
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0
Query:    1 MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSW 106
            MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSW
Sbjct:    1 MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSW 106          
The following BLAST results are available for this feature:
BLAST of BraAnng004550.3.5C.1 vs. GenBank_protein
Analysis Date: 2022-02-26 (Diamond on OGS3.5 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
XP_013729821.11.330e-78100.00uncharacterized protein LOC106433536 [Brassica nap... [more]
XP_009124042.15.750e-78100.00LOW QUALITY PROTEIN: uncharacterized protein LOC10... [more]
XP_013584113.11.540e-7798.33PREDICTED: uncharacterized protein LOC106292986 [B... [more]
KAG5399425.12.190e-7799.17hypothetical protein IGI04_021239 [Brassica rapa s... [more]
CAF1793755.18.850e-7798.33unnamed protein product [Brassica napus][more]
KAF3612210.11.260e-7697.50hypothetical protein DY000_02051684 [Brassica cret... [more]
KAG2273372.11.930e-7394.17hypothetical protein Bca52824_067927 [Brassica car... [more]
KAF8081813.17.820e-7393.33hypothetical protein N665_0866s0018 [Sinapis alba][more]
XP_018432713.11.180e-7292.50PREDICTED: uncharacterized protein LOC108805226 [R... [more]
CDY37508.14.140e-68100.00BnaA05g33730D [Brassica napus][more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032259 methylation
molecular_function GO:0008168 methyltransferase activity
InterPro
Analysis Name: InterProScan on OGS3.5
Date Performed: 2022-02-26
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..49
NoneNo IPR availablePANTHERPTHR43036OSJNBB0011N17.9 PROTEINcoord: 9..120
NoneNo IPR availablePANTHERPTHR43036:SF2OSJNBB0011N17.9 PROTEINcoord: 9..120

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold0923contigScaffold0923:4087..4452 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS3.52022-02-26
Diamond on OGS3.5 vs NR2022-02-26
Blast2GO on OGS3.52022-02-26
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BraAnng004550.3.5C.1BraAnng004550.3.5C.1Brassica rapa chifumRNAScaffold0923 4010..5111 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BraAnng004550.3.5C.1-P1 ID=BraAnng004550.3.5C.1-P1|Name=BraAnng004550.3.5C.1|organism=Brassica rapa chifu|type=polypeptide|length=122bp
MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLV
LNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVL
DLMSSWVSHLPEEVKYEKVVA.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
TermDefinition
GO:0032259methylation
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity