BraAnng004550.3.5C.1-P1 (polypeptide) Brassica rapa chifu

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	BraAnng004550.3.5C.1
Unique Name	BraAnng004550.3.5C.1-P1
Type	polypeptide
Organism	Brassica rapa chifu (field mustard)
Sequence length	122

Homology

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BLAST of BraAnng004550.3.5C.1 vs. GenBank_protein
Match: XP_013729821.1 (uncharacterized protein LOC106433536 [Brassica napus] >KAF2549579.1 hypothetical protein F2Q70_00024138 [Brassica cretica] >RID64722.1 hypothetical protein BRARA_E03640 [Brassica rapa] >VDD25009.1 unnamed protein product [Brassica rapa])

HSP 1 Score: 243 bits (619), Expect = 1.330e-78
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0

Query:    1 MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKVV 120
            MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKVV
Sbjct:    1 MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKVV 120

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BLAST of BraAnng004550.3.5C.1 vs. GenBank_protein
Match: XP_009124042.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC103848959 [Brassica rapa])

HSP 1 Score: 241 bits (615), Expect = 5.750e-78
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0

Query:    1 MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKV 119
            MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKV
Sbjct:    1 MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKV 119

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BLAST of BraAnng004550.3.5C.1 vs. GenBank_protein
Match: XP_013584113.1 (PREDICTED: uncharacterized protein LOC106292986 [Brassica oleracea var. oleracea] >KAF3584769.1 hypothetical protein F2Q69_00032583 [Brassica cretica] >KAG2273333.1 hypothetical protein Bca52824_067888 [Brassica carinata])

HSP 1 Score: 240 bits (612), Expect = 1.540e-77
Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 0

Query:    1 MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKVV 120
            MDSL+FNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYE+VV
Sbjct:    1 MDSLQFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYERVV 120

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BLAST of BraAnng004550.3.5C.1 vs. GenBank_protein
Match: KAG5399425.1 (hypothetical protein IGI04_021239 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 239 bits (611), Expect = 2.190e-77
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0

Query:    1 MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKVV 120
            MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNA PDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKVV
Sbjct:    1 MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNARPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKVV 120

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BLAST of BraAnng004550.3.5C.1 vs. GenBank_protein
Match: CAF1793755.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 238 bits (607), Expect = 8.850e-77
Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 0

Query:    1 MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKVV 120
            MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEET+ RPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKVV
Sbjct:    1 MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETETRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKVV 120

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BLAST of BraAnng004550.3.5C.1 vs. GenBank_protein
Match: KAF3612210.1 (hypothetical protein DY000_02051684 [Brassica cretica])

HSP 1 Score: 238 bits (606), Expect = 1.260e-76
Identity = 117/120 (97.50%), Postives = 118/120 (98.33%), Query Frame = 0

Query:    1 MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKVV 120
            MDSLRFNL Q PFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNH+DDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKVV
Sbjct:    1 MDSLRFNLPQYPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHIDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKVV 120

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BLAST of BraAnng004550.3.5C.1 vs. GenBank_protein
Match: KAG2273372.1 (hypothetical protein Bca52824_067927 [Brassica carinata])

HSP 1 Score: 229 bits (585), Expect = 1.930e-73
Identity = 113/120 (94.17%), Postives = 116/120 (96.67%), Query Frame = 0

Query:    1 MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKVV 120
            MDSLRFNLQQSPF LRPRRT+RP I+NISNQTEETDPRP SSAGKIQRLVLNNEGRTKLNA PDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLD+MSSWVSHLPEEVKYEKVV
Sbjct:    1 MDSLRFNLQQSPFHLRPRRTLRPSISNISNQTEETDPRPTSSAGKIQRLVLNNEGRTKLNADPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDMMSSWVSHLPEEVKYEKVV 120

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BLAST of BraAnng004550.3.5C.1 vs. GenBank_protein
Match: KAF8081813.1 (hypothetical protein N665_0866s0018 [Sinapis alba])

HSP 1 Score: 228 bits (581), Expect = 7.820e-73
Identity = 112/120 (93.33%), Postives = 115/120 (95.83%), Query Frame = 0

Query:    1 MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKVV 120
            MDSLRFNLQQSPFQ RPRRT+RPRITNISNQTEE DPRP S AGKIQRLVLNNEGRTKLNA PDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLD+MSSWVSHLP+EVKYEKVV
Sbjct:    1 MDSLRFNLQQSPFQFRPRRTLRPRITNISNQTEENDPRPSSLAGKIQRLVLNNEGRTKLNADPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDMMSSWVSHLPKEVKYEKVV 120

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BLAST of BraAnng004550.3.5C.1 vs. GenBank_protein
Match: XP_018432713.1 (PREDICTED: uncharacterized protein LOC108805226 [Raphanus sativus])

HSP 1 Score: 228 bits (580), Expect = 1.180e-72
Identity = 111/120 (92.50%), Postives = 116/120 (96.67%), Query Frame = 0

Query:    1 MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSWVSHLPEEVKYEKVV 120
            MDSLRFNL QSPFQLRPR+T RPRIT+ISNQTEETDPRP SS GKIQRLVLNNEGRTKLN+GPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLD+MSSWVSHLPEEVK+EKVV
Sbjct:    1 MDSLRFNLHQSPFQLRPRKTFRPRITSISNQTEETDPRPTSSPGKIQRLVLNNEGRTKLNSGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDMMSSWVSHLPEEVKFEKVV 120

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BLAST of BraAnng004550.3.5C.1 vs. GenBank_protein
Match: CDY37508.1 (BnaA05g33730D [Brassica napus])

HSP 1 Score: 215 bits (548), Expect = 4.140e-68
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0

Query:    1 MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSW 106
            MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSW
Sbjct:    1 MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLVLNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVLDLMSSW 106

The following BLAST results are available for this feature:

BLAST of BraAnng004550.3.5C.1 vs. GenBank_protein

BLAST of BraAnng004550.3.5C.1 vs. GenBank_protein
Analysis Date: 2022-02-26 (Diamond on OGS3.5 vs NR)
Total hits: 20


Match Name	E-value	Identity	Description
XP_013729821.1	1.330e-78	100.00	uncharacterized protein LOC106433536 [Brassica nap...	[more]
XP_009124042.1	5.750e-78	100.00	LOW QUALITY PROTEIN: uncharacterized protein LOC10...	[more]
XP_013584113.1	1.540e-77	98.33	PREDICTED: uncharacterized protein LOC106292986 [B...	[more]
KAG5399425.1	2.190e-77	99.17	hypothetical protein IGI04_021239 [Brassica rapa s...	[more]
CAF1793755.1	8.850e-77	98.33	unnamed protein product [Brassica napus]	[more]
KAF3612210.1	1.260e-76	97.50	hypothetical protein DY000_02051684 [Brassica cret...	[more]
KAG2273372.1	1.930e-73	94.17	hypothetical protein Bca52824_067927 [Brassica car...	[more]
KAF8081813.1	7.820e-73	93.33	hypothetical protein N665_0866s0018 [Sinapis alba]	[more]
XP_018432713.1	1.180e-72	92.50	PREDICTED: uncharacterized protein LOC108805226 [R...	[more]
CDY37508.1	4.140e-68	100.00	BnaA05g33730D [Brassica napus]	[more]

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GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
molecular_function	GO:0008168	methyltransferase activity

InterPro

Analysis Name: InterProScan on OGS3.5
Date Performed: 2022-02-26


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..49
None	No IPR available	PANTHER	PTHR43036	OSJNBB0011N17.9 PROTEIN	coord: 9..120
None	No IPR available	PANTHER	PTHR43036:SF2	OSJNBB0011N17.9 PROTEIN	coord: 9..120

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold0923	contig	Scaffold0923:4087..4452 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS3.5	2022-02-26
Diamond on OGS3.5 vs NR	2022-02-26
Blast2GO on OGS3.5	2022-02-26

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
BraAnng004550.3.5C.1	BraAnng004550.3.5C.1	Brassica rapa chifu	mRNA	Scaffold0923 4010..5111 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>BraAnng004550.3.5C.1-P1 ID=BraAnng004550.3.5C.1-P1|Name=BraAnng004550.3.5C.1|organism=Brassica rapa chifu|type=polypeptide|length=122bp
MDSLRFNLQQSPFQLRPRRTIRPRITNISNQTEETDPRPPSSAGKIQRLV
LNNEGRTKLNAGPDREFYSYPRFVNHVDDGFISSLTDLYRNRLRSGSIVL
DLMSSWVSHLPEEVKYEKVVA.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **Biological Process**
Term	Definition
GO:0032259	methylation

Vocabulary: **Molecular Function**
Term	Definition
GO:0008168	methyltransferase activity

Orthology

View orthology data for BraAnng004550.3.5C.1-P1