BraAnng003200.3.5C.1-P1 (polypeptide) Brassica rapa chifu

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	BraAnng003200.3.5C.1
Unique Name	BraAnng003200.3.5C.1-P1
Type	polypeptide
Organism	Brassica rapa chifu (field mustard)
Sequence length	181

Homology

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BLAST of BraAnng003200.3.5C.1 vs. GenBank_protein
Match: KAG5383813.1 (hypothetical protein IGI04_035283 [Brassica rapa subsp. trilocularis] >KAG5383816.1 hypothetical protein IGI04_035286 [Brassica rapa subsp. trilocularis] >KAG5385227.1 hypothetical protein IGI04_036697 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 305 bits (782), Expect = 3.800e-103
Identity = 146/162 (90.12%), Postives = 147/162 (90.74%), Query Frame = 0

Query:   19 SFWGDGGIVPFEPFFHAFPRGLEKAAINRIFLILPSRKEEREILFPFRLEMGAGLKKDLRVSREEGGNKHTWRAQYNGELCDDLLHGRGLWFKSRMAQLRQGKEYKKDLTPSCMLHLARGDIAQLVELRSCNWVVAITGWVSNCPGGNDSILYLNRWLTFSK 180
            S+    GIVPFEPFFHAFPRGLEKAAINRIFLILPSRKEEREILFPFRLEMGA           EGGNKHTWRAQYNGELCDDLLHGRGLWFKSRMAQLRQGKEYKKDLTPSCMLHLARGDIAQLVELRSCNWVVAITGWVSNCPGGNDSILYLNRWLTFSK
Sbjct:   73 SYLSSAGIVPFEPFFHAFPRGLEKAAINRIFLILPSRKEEREILFPFRLEMGA-----------EGGNKHTWRAQYNGELCDDLLHGRGLWFKSRMAQLRQGKEYKKDLTPSCMLHLARGDIAQLVELRSCNWVVAITGWVSNCPGGNDSILYLNRWLTFSK 223

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BLAST of BraAnng003200.3.5C.1 vs. GenBank_protein
Match: CDY19669.1 (BnaC09g29250D [Brassica napus] >VDD22540.1 unnamed protein product [Brassica rapa])

HSP 1 Score: 303 bits (777), Expect = 8.320e-102
Identity = 145/156 (92.95%), Postives = 145/156 (92.95%), Query Frame = 0

Query:   25 GIVPFEPFFHAFPRGLEKAAINRIFLILPSRKEEREILFPFRLEMGAGLKKDLRVSREEGGNKHTWRAQYNGELCDDLLHGRGLWFKSRMAQLRQGKEYKKDLTPSCMLHLARGDIAQLVELRSCNWVVAITGWVSNCPGGNDSILYLNRWLTFSK 180
            GIVPFEPFFHAFPRGLEKAAINRIFLILPSRKEEREILFPFRLEMGA           EGGNKHTWRAQYNGELCDDLLHGRGLWFKSRMAQLRQGKEYKKDLTPSCMLHLARGDIAQLVELRSCNWVVAITGWVSNCPGGNDSILYLNRWLTFSK
Sbjct:   81 GIVPFEPFFHAFPRGLEKAAINRIFLILPSRKEEREILFPFRLEMGA-----------EGGNKHTWRAQYNGELCDDLLHGRGLWFKSRMAQLRQGKEYKKDLTPSCMLHLARGDIAQLVELRSCNWVVAITGWVSNCPGGNDSILYLNRWLTFSK 225

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BLAST of BraAnng003200.3.5C.1 vs. GenBank_protein
Match: VDD65269.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 303 bits (777), Expect = 8.320e-102
Identity = 145/156 (92.95%), Postives = 145/156 (92.95%), Query Frame = 0

Query:   25 GIVPFEPFFHAFPRGLEKAAINRIFLILPSRKEEREILFPFRLEMGAGLKKDLRVSREEGGNKHTWRAQYNGELCDDLLHGRGLWFKSRMAQLRQGKEYKKDLTPSCMLHLARGDIAQLVELRSCNWVVAITGWVSNCPGGNDSILYLNRWLTFSK 180
            GIVPFEPFFHAFPRGLEKAAINRIFLILPSRKEEREILFPFRLEMGA           EGGNKHTWRAQYNGELCDDLLHGRGLWFKSRMAQLRQGKEYKKDLTPSCMLHLARGDIAQLVELRSCNWVVAITGWVSNCPGGNDSILYLNRWLTFSK
Sbjct:   81 GIVPFEPFFHAFPRGLEKAAINRIFLILPSRKEEREILFPFRLEMGA-----------EGGNKHTWRAQYNGELCDDLLHGRGLWFKSRMAQLRQGKEYKKDLTPSCMLHLARGDIAQLVELRSCNWVVAITGWVSNCPGGNDSILYLNRWLTFSK 225

[Close]

BLAST of BraAnng003200.3.5C.1 vs. GenBank_protein
Match: CDY63597.1 (BnaUnng00850D [Brassica napus])

HSP 1 Score: 303 bits (777), Expect = 9.860e-102
Identity = 145/156 (92.95%), Postives = 145/156 (92.95%), Query Frame = 0

Query:   25 GIVPFEPFFHAFPRGLEKAAINRIFLILPSRKEEREILFPFRLEMGAGLKKDLRVSREEGGNKHTWRAQYNGELCDDLLHGRGLWFKSRMAQLRQGKEYKKDLTPSCMLHLARGDIAQLVELRSCNWVVAITGWVSNCPGGNDSILYLNRWLTFSK 180
            GIVPFEPFFHAFPRGLEKAAINRIFLILPSRKEEREILFPFRLEMGA           EGGNKHTWRAQYNGELCDDLLHGRGLWFKSRMAQLRQGKEYKKDLTPSCMLHLARGDIAQLVELRSCNWVVAITGWVSNCPGGNDSILYLNRWLTFSK
Sbjct:   86 GIVPFEPFFHAFPRGLEKAAINRIFLILPSRKEEREILFPFRLEMGA-----------EGGNKHTWRAQYNGELCDDLLHGRGLWFKSRMAQLRQGKEYKKDLTPSCMLHLARGDIAQLVELRSCNWVVAITGWVSNCPGGNDSILYLNRWLTFSK 230

[Close]

BLAST of BraAnng003200.3.5C.1 vs. GenBank_protein
Match: VDD22498.1 (unnamed protein product [Brassica rapa] >VDD25486.1 unnamed protein product [Brassica rapa] >VDD65329.1 unnamed protein product [Brassica oleracea] >VDD65740.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 303 bits (777), Expect = 1.130e-101
Identity = 145/156 (92.95%), Postives = 145/156 (92.95%), Query Frame = 0

Query:   25 GIVPFEPFFHAFPRGLEKAAINRIFLILPSRKEEREILFPFRLEMGAGLKKDLRVSREEGGNKHTWRAQYNGELCDDLLHGRGLWFKSRMAQLRQGKEYKKDLTPSCMLHLARGDIAQLVELRSCNWVVAITGWVSNCPGGNDSILYLNRWLTFSK 180
            GIVPFEPFFHAFPRGLEKAAINRIFLILPSRKEEREILFPFRLEMGA           EGGNKHTWRAQYNGELCDDLLHGRGLWFKSRMAQLRQGKEYKKDLTPSCMLHLARGDIAQLVELRSCNWVVAITGWVSNCPGGNDSILYLNRWLTFSK
Sbjct:   90 GIVPFEPFFHAFPRGLEKAAINRIFLILPSRKEEREILFPFRLEMGA-----------EGGNKHTWRAQYNGELCDDLLHGRGLWFKSRMAQLRQGKEYKKDLTPSCMLHLARGDIAQLVELRSCNWVVAITGWVSNCPGGNDSILYLNRWLTFSK 234

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BLAST of BraAnng003200.3.5C.1 vs. GenBank_protein
Match: KAG5385221.1 (hypothetical protein IGI04_036691 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 301 bits (772), Expect = 1.360e-101
Identity = 144/156 (92.31%), Postives = 144/156 (92.31%), Query Frame = 0

Query:   25 GIVPFEPFFHAFPRGLEKAAINRIFLILPSRKEEREILFPFRLEMGAGLKKDLRVSREEGGNKHTWRAQYNGELCDDLLHGRGLWFKSRMAQLRQGKEYKKDLTPSCMLHLARGDIAQLVELRSCNWVVAITGWVSNCPGGNDSILYLNRWLTFSK 180
            GIVPFEPFFHAFPRGLEKAAINRIFLILPSRKEEREILFPFRLEMGA           EGGNKHTWRAQYNGELCDDLLHGRGLWFKSRMAQLRQGKEYKKDLTPSCMLHLARGDI QLVELRSCNWVVAITGWVSNCPGGNDSILYLNRWLTFSK
Sbjct:   81 GIVPFEPFFHAFPRGLEKAAINRIFLILPSRKEEREILFPFRLEMGA-----------EGGNKHTWRAQYNGELCDDLLHGRGLWFKSRMAQLRQGKEYKKDLTPSCMLHLARGDIPQLVELRSCNWVVAITGWVSNCPGGNDSILYLNRWLTFSK 225

[Close]

BLAST of BraAnng003200.3.5C.1 vs. GenBank_protein
Match: VDD65692.1 (unnamed protein product, partial [Brassica oleracea])

HSP 1 Score: 300 bits (768), Expect = 5.330e-101
Identity = 143/154 (92.86%), Postives = 143/154 (92.86%), Query Frame = 0

Query:   25 GIVPFEPFFHAFPRGLEKAAINRIFLILPSRKEEREILFPFRLEMGAGLKKDLRVSREEGGNKHTWRAQYNGELCDDLLHGRGLWFKSRMAQLRQGKEYKKDLTPSCMLHLARGDIAQLVELRSCNWVVAITGWVSNCPGGNDSILYLNRWLTF 178
            GIVPFEPFFHAFPRGLEKAAINRIFLILPSRKEEREILFPFRLEMGA           EGGNKHTWRAQYNGELCDDLLHGRGLWFKSRMAQLRQGKEYKKDLTPSCMLHLARGDIAQLVELRSCNWVVAITGWVSNCPGGNDSILYLNRWLTF
Sbjct:   81 GIVPFEPFFHAFPRGLEKAAINRIFLILPSRKEEREILFPFRLEMGA-----------EGGNKHTWRAQYNGELCDDLLHGRGLWFKSRMAQLRQGKEYKKDLTPSCMLHLARGDIAQLVELRSCNWVVAITGWVSNCPGGNDSILYLNRWLTF 223

[Close]

BLAST of BraAnng003200.3.5C.1 vs. GenBank_protein
Match: VDD65454.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 276 bits (706), Expect = 5.050e-91
Identity = 135/163 (82.82%), Postives = 139/163 (85.28%), Query Frame = 0

Query:   19 SFWGDGGIVPFEP-FFHAFPRGLEKAAINRIFLILPSRKEEREILFPFRLEMGAGLKKDLRVSREEGGNKHTWRAQYNGELCDDLLHGRGLWFKSRMAQLRQGKEYKKDLTPSCMLHLARGDIAQLVELRSCNWVVAITGWVSNCPGGNDSILYLNRWLTFSK 180
            S+    G+  +    F  F +GLEKAAINRIFLILPSRKEEREILFPFRLEMGA           EGGNKHTWRAQYNGELCDDLLHGRGLWFKSRMAQLRQGKEYKKDLTPSCMLHLARGDIAQLVELRSCNWVVAITGWVSNCPGGNDSILYLNRWLTFSK
Sbjct:   73 SYLSSAGLGSYRSSLFSCFSQGLEKAAINRIFLILPSRKEEREILFPFRLEMGA-----------EGGNKHTWRAQYNGELCDDLLHGRGLWFKSRMAQLRQGKEYKKDLTPSCMLHLARGDIAQLVELRSCNWVVAITGWVSNCPGGNDSILYLNRWLTFSK 224

[Close]

BLAST of BraAnng003200.3.5C.1 vs. GenBank_protein
Match: VDD65397.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 219 bits (559), Expect = 2.280e-70
Identity = 103/112 (91.96%), Postives = 104/112 (92.86%), Query Frame = 0

Query:   69 MGAGLKKDLRVSREEGGNKHTWRAQYNGELCDDLLHGRGLWFKSRMAQLRQGKEYKKDLTPSCMLHLARGDIAQLVELRSCNWVVAITGWVSNCPGGNDSILYLNRWLTFSK 180
            MGAGLK+ L       GNKHTWRAQYNGELCDDLLHGRGLWFKSRMAQLRQGKEYKKDLTPSCMLHLARGDIAQLVELRSCNWVVAITGWVSNCPGGNDSILYLNRWLTFSK
Sbjct:    1 MGAGLKRILE------GNKHTWRAQYNGELCDDLLHGRGLWFKSRMAQLRQGKEYKKDLTPSCMLHLARGDIAQLVELRSCNWVVAITGWVSNCPGGNDSILYLNRWLTFSK 106

[Close]

BLAST of BraAnng003200.3.5C.1 vs. GenBank_protein
Match: VDD25644.1 (unnamed protein product [Brassica rapa] >VDD65486.1 unnamed protein product [Brassica oleracea])

HSP 1 Score: 215 bits (548), Expect = 1.100e-67
Identity = 107/136 (78.68%), Postives = 113/136 (83.09%), Query Frame = 0

Query:   25 GIVPFEPFFHAFPRGLEKAAINRIFLILPSRKEEREILFPFRLEMGAGLKKDLRVSREEGGNKHTWRAQYNGELCDDLLHGRGLWFKSRMAQLRQGKEYKKDLTPSCMLHLARGDI-----AQLVELRSCNWVVAI 155
            GIVPFEPFFHAFPRGLEKAAINRIFLILPSRKEEREILFPFRLEMGA           EGGNKHTWRAQYNGELCDDLLHGRGLWFKSRMAQLRQGKEYKKDLTPSCMLHLARG       A L++L  C++ + +
Sbjct:   90 GIVPFEPFFHAFPRGLEKAAINRIFLILPSRKEEREILFPFRLEMGA-----------EGGNKHTWRAQYNGELCDDLLHGRGLWFKSRMAQLRQGKEYKKDLTPSCMLHLARGGYSSVGRAPLLQLGRCDYGLGV 214

The following BLAST results are available for this feature:

BLAST of BraAnng003200.3.5C.1 vs. GenBank_protein

BLAST of BraAnng003200.3.5C.1 vs. GenBank_protein
Analysis Date: 2022-02-26 (Diamond on OGS3.5 vs NR)
Total hits: 20


Match Name	E-value	Identity	Description
KAG5383813.1	3.800e-103	90.12	hypothetical protein IGI04_035283 [Brassica rapa s...	[more]
CDY19669.1	8.320e-102	92.95	BnaC09g29250D [Brassica napus] >VDD22540.1 unnamed...	[more]
VDD65269.1	8.320e-102	92.95	unnamed protein product [Brassica oleracea]	[more]
CDY63597.1	9.860e-102	92.95	BnaUnng00850D [Brassica napus]	[more]
VDD22498.1	1.130e-101	92.95	unnamed protein product [Brassica rapa] >VDD25486....	[more]
KAG5385221.1	1.360e-101	92.31	hypothetical protein IGI04_036691 [Brassica rapa s...	[more]
VDD65692.1	5.330e-101	92.86	unnamed protein product, partial [Brassica olerace...	[more]
VDD65454.1	5.050e-91	82.82	unnamed protein product [Brassica oleracea]	[more]
VDD65397.1	2.280e-70	91.96	unnamed protein product [Brassica oleracea]	[more]
VDD25644.1	1.100e-67	78.68	unnamed protein product [Brassica rapa] >VDD65486....	[more]

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InterPro

Analysis Name: InterProScan on OGS3.5
Date Performed: 2022-02-26


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022546	Uncharacterised protein family Ycf68	PANTHER	PTHR34890	FAMILY NOT NAMED	coord: 2..178

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold0631	contig	Scaffold0631:52041..52736 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS3.5	2022-02-26
Diamond on OGS3.5 vs NR	2022-02-26

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
BraAnng003200.3.5C.1	BraAnng003200.3.5C.1	Brassica rapa chifu	mRNA	Scaffold0631 52041..52736 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>BraAnng003200.3.5C.1-P1 ID=BraAnng003200.3.5C.1-P1|Name=BraAnng003200.3.5C.1|organism=Brassica rapa chifu|type=polypeptide|length=181bp
MEHLTTYLHRPRTTRSPLSFWGDGGIVPFEPFFHAFPRGLEKAAINRIFL
ILPSRKEEREILFPFRLEMGAGLKKDLRVSREEGGNKHTWRAQYNGELCD
DLLHGRGLWFKSRMAQLRQGKEYKKDLTPSCMLHLARGDIAQLVELRSCN
WVVAITGWVSNCPGGNDSILYLNRWLTFSK.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022546	Uncharacterised_Ycf68

Orthology

View orthology data for BraAnng003200.3.5C.1-P1