BraAnng003140.3.5C.1-P1 (polypeptide) Brassica rapa chifu

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBraAnng003140.3.5C.1
Unique NameBraAnng003140.3.5C.1-P1
Typepolypeptide
OrganismBrassica rapa chifu (field mustard)
Sequence length266
Homology
BLAST of BraAnng003140.3.5C.1 vs. GenBank_protein
Match: XP_033139113.1 (tol-Pal system protein TolA-like [Brassica rapa] >XP_033139266.1 tol-Pal system protein TolA-like [Brassica rapa])

HSP 1 Score: 266 bits (679), Expect = 3.140e-85
Identity = 202/223 (90.58%), Postives = 202/223 (90.58%), Query Frame = 0
Query:    1 MDFESRTGQIEGPTNPIGGPSNNAQSGQVHAYSVEATGATLGAEALKAMEGRLMNAVRDAVXXAMKGVKEKVTSLSTQLGLLEEEVKSLRLSVPGSDNPAVQDDGDGSDNSESEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVEDAILDISKD----------------RSRKDDGKEAVPVKKVKVDRGDTVRSPIQLRSRAAEKSS 207
            MDFESRTGQIEGPTNPIGGPSNNAQSGQVHAYSVEATGATLGAEALKAMEGRLMNAVRDAVXXAMKGVKEKVTSLSTQLGLLEEEVKSLRLSVPGSDNPAVQDDGDGSDNSESEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    AILDISKD                 SRKDDGKEAVPVKKVKVDRGDTVRSPIQLRSRAAEKSS
Sbjct:    1 MDFESRTGQIEGPTNPIGGPSNNAQSGQVHAYSVEATGATLGAEALKAMEGRLMNAVRDAVXXAMKGVKEKVTSLSTQLGLLEEEVKSLRLSVPGSDNPAVQDDGDGSDNSESEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAILDISKDVQREYGDVDMDDDDAEMSRKDDGKEAVPVKKVKVDRGDTVRSPIQLRSRAAEKSS 223          
BLAST of BraAnng003140.3.5C.1 vs. GenBank_protein
Match: XP_033138910.1 (tol-Pal system protein TolA-like [Brassica rapa])

HSP 1 Score: 263 bits (672), Expect = 5.310e-84
Identity = 201/223 (90.13%), Postives = 201/223 (90.13%), Query Frame = 0
Query:    1 MDFESRTGQIEGPTNPIGGPSNNAQSGQVHAYSVEATGATLGAEALKAMEGRLMNAVRDAVXXAMKGVKEKVTSLSTQLGLLEEEVKSLRLSVPGSDNPAVQDDGDGSDNSESEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVEDAILDISKD----------------RSRKDDGKEAVPVKKVKVDRGDTVRSPIQLRSRAAEKSS 207
            MDFESRTGQIEGPTNPIGGPSNNAQSGQVHAYSVEATGAT GAEALKAMEGRLMNAVRDAVXXAMKGVKEKVTSLSTQLGLLEEEVKSLRLSVPGSDNPAVQDDGDGSDNSESEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    AILDISKD                 SRKDDGKEAVPVKKVKVDRGDTVRSPIQLRSRAAEKSS
Sbjct:    1 MDFESRTGQIEGPTNPIGGPSNNAQSGQVHAYSVEATGATPGAEALKAMEGRLMNAVRDAVXXAMKGVKEKVTSLSTQLGLLEEEVKSLRLSVPGSDNPAVQDDGDGSDNSESEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAILDISKDVQREYGDVDMDDDDAEMSRKDDGKEAVPVKKVKVDRGDTVRSPIQLRSRAAEKSS 223          
BLAST of BraAnng003140.3.5C.1 vs. GenBank_protein
Match: RID40701.1 (hypothetical protein BRARA_J00732 [Brassica rapa])

HSP 1 Score: 251 bits (642), Expect = 8.030e-78
Identity = 198/248 (79.84%), Postives = 201/248 (81.05%), Query Frame = 0
Query:    1 MDFESRTGQIEGPTNPIGGPSNNAQSGQVHAYSVEATGATLGAEALKAMEGRLMNAVRDAVXXAMKGVKEKVTSLSTQLGLLEEEVKSLRLSVPGSDNPAVQDDGDGSDNSESEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVEDAILDISKD-----------------------------------------RSRKDDGKEAVPVKKVKVDRGDTVRSPIQLRSRAAEKSS 207
            MDFESRTGQIEGPTNPIGGPSNNAQSGQ HA SVEAT AT GAEALKAMEGRLMNAVRDAV XAMKGVKEKVTSLSTQLGLLEEEVKSLRLSVPGSDNPAVQDDGDGSDNSESEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VEDAILDISKD                                         RSRKDDGKEA+PVKKVKVDRGDTVRSPIQL+SRAAEKS+
Sbjct:   97 MDFESRTGQIEGPTNPIGGPSNNAQSGQAHADSVEATRATPGAEALKAMEGRLMNAVRDAVRXAMKGVKEKVTSLSTQLGLLEEEVKSLRLSVPGSDNPAVQDDGDGSDNSESEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEDAILDISKDVQREYGDVDMDDDDAEMYAHAVEAEKKLKTKAAESVNTKKKRSRKDDGKEAIPVKKVKVDRGDTVRSPIQLKSRAAEKST 344          
BLAST of BraAnng003140.3.5C.1 vs. GenBank_protein
Match: XP_013713365.1 (uncharacterized protein At3g43530-like [Brassica napus])

HSP 1 Score: 246 bits (629), Expect = 7.360e-75
Identity = 183/221 (82.81%), Postives = 183/221 (82.81%), Query Frame = 0
Query:    1 MDFESRTGQIEGPTNPIGGPSNNAQSGQVHAYSVEATGATLGAEALKAMEGRLMNAVRDAVXXAMKGVKEKVTSLSTQLGLLEEEVKSLRLSVPGSDNPAVQDDGDGSDNSESEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVEDAILDISKD----------------RSRKDDGKEAVPVKKVKVDRGDTVRSPIQLRSRAAEK 205
            MDFESRTGQIEGPTNPIGGPSNNAQSGQ HA SVEATGAT GAEALKAMEGRLMNA RDAV  AMKGVKEKVTSLSTQLGLLEEEVKSLR SVPGSDNPAVQDDGDGSDNSESEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             DAILDISKD                 SRKDDGKEAVPVKKVKVDRGD VRSPIQLRSRAAEK
Sbjct:  226 MDFESRTGQIEGPTNPIGGPSNNAQSGQAHADSVEATGATPGAEALKAMEGRLMNADRDAVRDAMKGVKEKVTSLSTQLGLLEEEVKSLRWSVPGSDNPAVQDDGDGSDNSESEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------XXDAILDISKDVQREYGDVDMDDDDAEMSRKDDGKEAVPVKKVKVDRGDNVRSPIQLRSRAAEK 435          
BLAST of BraAnng003140.3.5C.1 vs. GenBank_protein
Match: XP_033146246.1 (uncharacterized protein At3g43530-like [Brassica rapa])

HSP 1 Score: 242 bits (617), Expect = 1.030e-72
Identity = 186/246 (75.61%), Postives = 189/246 (76.83%), Query Frame = 0
Query:    1 MDFESRTGQIEGPTNPIGGPSNNAQSGQVHAYSVEATGATLGAEALKAMEGRLMNAVRDAVXXAMKGVKEKVTSLSTQLGLLEEEVKSLRLSVPGSDNPAVQDDGDGSDNSESEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVEDAILDISKD-----------------------------------------RSRKDDGKEAVPVKKVKVDRGDTVRSPIQLRSRAAEK 205
            MDFESRTGQIEGPTNPIGGPSNNAQSGQ HA SVEATGAT GAEALKAMEGRLMNAVRDAVXXAMKGVKEKVTSLSTQLGLLEE+VKSLRLS PGSDNPAVQDDGDGSDNSESEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           VEDAI+DISKD                                         RSRKDDGKEAVPVKKVKVDRGD VRSPIQLRS+AAEK
Sbjct:  226 MDFESRTGQIEGPTNPIGGPSNNAQSGQAHADSVEATGATPGAEALKAMEGRLMNAVRDAVXXAMKGVKEKVTSLSTQLGLLEEKVKSLRLSGPGSDNPAVQDDGDGSDNSESEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------VEDAIVDISKDVHREYGDVDMDDDDAEMYAHAVEAEKKLKTKAAESVNTKKKRSRKDDGKEAVPVKKVKVDRGDNVRSPIQLRSKAAEK 460          
BLAST of BraAnng003140.3.5C.1 vs. GenBank_protein
Match: XP_013713363.1 (uncharacterized protein LOC106417044 [Brassica napus])

HSP 1 Score: 229 bits (585), Expect = 1.990e-70
Identity = 185/250 (74.00%), Postives = 189/250 (75.60%), Query Frame = 0
Query:    1 MDFESRTGQIEGPTNPIGGPSNNAQSGQVHAYSVEATGATLGAEALKAMEGRLMNAVRDAVXXAMKGVKEKVTSLSTQLGLLEEEVKSLRLSVPGSDNPAVQDDGDGSDNSESEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD--VEDAILDISKD-----------------------------------------RSRKDDGKEAVPVKKVKVDRGDTVRSPIQLRSRAAEKSS 207
            MDFESRTGQIEGPTNPIG   NNAQSGQ HA SVEATGAT GAEALKAMEGRLMNAVRDAVXXAMKGVKEKVTSLSTQLGLLEEEVKSLRLSVPGSDNPAVQDDGDGSDNSESEE XXXXXXXXXXXXXXXXXXXXXXXXXX      XXXXXXXX   VED ILDISKD                                         RSRKDD KEAVPVKKVKVDRGD V++PIQLRSRAAE+ +
Sbjct:    1 MDFESRTGQIEGPTNPIGXXXNNAQSGQAHADSVEATGATPGAEALKAMEGRLMNAVRDAVXXAMKGVKEKVTSLSTQLGLLEEEVKSLRLSVPGSDNPAVQDDGDGSDNSESEEXXXXXXXXXXXXXXXXXXXXXXXXXXXDGGDNNXXXXXXXXXXXVEDTILDISKDVQREYGDVDMDDDDAEMYAHAVEAEKKIKTKAAESVNTKKMRSRKDDDKEAVPVKKVKVDRGDNVKNPIQLRSRAAEEKT 250          
BLAST of BraAnng003140.3.5C.1 vs. GenBank_protein
Match: KAG5384598.1 (hypothetical protein IGI04_036068 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 233 bits (593), Expect = 4.790e-70
Identity = 182/242 (75.21%), Postives = 185/242 (76.45%), Query Frame = 0
Query:    5 SRTGQIEGPTNPIGGPSNNAQSGQVHAYSVEATGATLGAEALKAMEGRLMNAVRDAVXXAMKGVKEKVTSLSTQLGLLEEEVKSLRLSVPGSDNPAVQDDGDGSDNSESEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVEDAILDISKD-----------------------------------------RSRKDDGKEAVPVKKVKVDRGDTVRSPIQLRSRAAEK 205
            SRTGQIEGPTNPIGGPSNNAQSGQ HA SVEATGAT GAEALKAMEGRLMNAVRDAVXXAMKGVKEKVTSLSTQLGLLEE+VKSLRLS PGSDNPAVQDDGDGSDNSESEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           VEDAI+DISKD                                         RSRKDDGKEAVPVKKVKVDRGD VRSPIQLRS+AAEK
Sbjct:  139 SRTGQIEGPTNPIGGPSNNAQSGQAHADSVEATGATPGAEALKAMEGRLMNAVRDAVXXAMKGVKEKVTSLSTQLGLLEEKVKSLRLSGPGSDNPAVQDDGDGSDNSESEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------VEDAIVDISKDVHREYGDVDMDDDDAEMYAHAVEAEKKLKTKAAESVNTKKKRSRKDDGKEAVPVKKVKVDRGDNVRSPIQLRSKAAEK 369          
BLAST of BraAnng003140.3.5C.1 vs. GenBank_protein
Match: KAG5400157.1 (hypothetical protein IGI04_014764, partial [Brassica rapa subsp. trilocularis])

HSP 1 Score: 228 bits (582), Expect = 6.750e-70
Identity = 162/200 (81.00%), Postives = 168/200 (84.00%), Query Frame = 0
Query:    6 RTGQIEGPTNPIGGPSNNAQSGQVHAYSVEATGATLGAEALKAMEGRLMNAVRDAVXXAMKGVKEKVTSLSTQLGLLEEEVKSLRLSVPGSDNPAVQDDGDGSDNSESEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVEDAILDISKDRSRKDDGKEAVPVKKVKVDRGDTVRSPIQLRSRAAEK 205
            + GQIEGPTNPIGGPSNNAQSGQ HA SVEATGAT GAEALKAMEGRLMNAVRDAV  AMKGVKEKVTSL TQLGLLEEEVKSLR SVPGSDNPAVQDDGDGSDNSESEE XXXXXXXXXXXXXXXXXXXXXXXXX                  +++ +  K RSRKDDGKEAVPVKKVKVDRGD VRSPIQ+RSRAAEK
Sbjct:   45 KLGQIEGPTNPIGGPSNNAQSGQAHADSVEATGATPGAEALKAMEGRLMNAVRDAVRDAMKGVKEKVTSLFTQLGLLEEEVKSLRWSVPGSDNPAVQDDGDGSDNSESEEXXXXXXXXXXXXXXXXXXXXXXXXXXEMYAHAVEAEKKLKTKAAESV-NTKKKRSRKDDGKEAVPVKKVKVDRGDNVRSPIQVRSRAAEK 243          
BLAST of BraAnng003140.3.5C.1 vs. GenBank_protein
Match: XP_018480084.1 (PREDICTED: uncharacterized protein At3g43530-like [Raphanus sativus])

HSP 1 Score: 227 bits (578), Expect = 1.340e-67
Identity = 176/219 (80.37%), Postives = 184/219 (84.02%), Query Frame = 0
Query:    1 MDFESRTGQIEGPTNPIGGPSNNAQSGQVHAYSVEATGATLGAEALKAMEGRLMNAVRDAVXXAMKGVKEKVTSLSTQLGLLEEEVKSLRLSVPGSDNPAVQDDGDGSDNSESEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVEDAILDISKD----------------RSRKDDGKEAVPVKKVKVDRGDTVRSPIQLRSRAA 203
            MDFESRTGQIEGPTNPIGGPSNNAQSGQ +A SVE +GAT GAEALKAMEGRLMNAVRDAV  AMKGVKEKVT LSTQLGLLEE+VKSLRLSVPGSDNPAVQDDGDGSDN+ESEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      +VEDAILDISKD                 SRKDDGKE VPVKK K+   +TVRSPIQLRS+AA
Sbjct:  208 MDFESRTGQIEGPTNPIGGPSNNAQSGQANADSVEFSGATPGAEALKAMEGRLMNAVRDAVRDAMKGVKEKVTLLSTQLGLLEEDVKSLRLSVPGSDNPAVQDDGDGSDNNESEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN-----NVEDAILDISKDVQREYGDVDMDDDDAEMSRKDDGKETVPVKKAKLMLRETVRSPIQLRSKAA 421          
BLAST of BraAnng003140.3.5C.1 vs. GenBank_protein
Match: KAG5400652.1 (hypothetical protein IGI04_015259 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 225 bits (574), Expect = 3.290e-67
Identity = 178/238 (74.79%), Postives = 181/238 (76.05%), Query Frame = 0
Query:    9 QIEGPTNPIGGPSNNAQSGQVHAYSVEATGATLGAEALKAMEGRLMNAVRDAVXXAMKGVKEKVTSLSTQLGLLEEEVKSLRLSVPGSDNPAVQDDGDGSDNSESEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVEDAILDISKD-----------------------------------------RSRKDDGKEAVPVKKVKVDRGDTVRSPIQLRSRAAEK 205
            QIEGPTNPIGGPSNNAQSGQ HA SVEATGAT GAEALKAMEGRLMNAVRDAVXXAMKGVKEKVTSLSTQLGLLEE+VKSLRLS PGSDNPAVQDDGDGSDNSESEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           VEDAI+DISKD                                         RSRKDDGKEAVPVKKVKVDRGD VRSPIQLRS+AAEK
Sbjct:  143 QIEGPTNPIGGPSNNAQSGQAHADSVEATGATPGAEALKAMEGRLMNAVRDAVXXAMKGVKEKVTSLSTQLGLLEEKVKSLRLSGPGSDNPAVQDDGDGSDNSESEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------VEDAIVDISKDVHREYGDVDMDDDDAEMYAHAVEAEKKLKTKAAESVNTKKKRSRKDDGKEAVPVKKVKVDRGDNVRSPIQLRSKAAEK 369          
The following BLAST results are available for this feature:
BLAST of BraAnng003140.3.5C.1 vs. GenBank_protein
Analysis Date: 2022-02-26 (Diamond on OGS3.5 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
XP_033139113.13.140e-8590.58tol-Pal system protein TolA-like [Brassica rapa] >... [more]
XP_033138910.15.310e-8490.13tol-Pal system protein TolA-like [Brassica rapa][more]
RID40701.18.030e-7879.84hypothetical protein BRARA_J00732 [Brassica rapa][more]
XP_013713365.17.360e-7582.81uncharacterized protein At3g43530-like [Brassica n... [more]
XP_033146246.11.030e-7275.61uncharacterized protein At3g43530-like [Brassica r... [more]
XP_013713363.11.990e-7074.00uncharacterized protein LOC106417044 [Brassica nap... [more]
KAG5384598.14.790e-7075.21hypothetical protein IGI04_036068 [Brassica rapa s... [more]
KAG5400157.16.750e-7081.00hypothetical protein IGI04_014764, partial [Brassi... [more]
XP_018480084.11.340e-6780.37PREDICTED: uncharacterized protein At3g43530-like ... [more]
KAG5400652.13.290e-6774.79hypothetical protein IGI04_015259 [Brassica rapa s... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS3.5
Date Performed: 2022-02-26
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 214..253
NoneNo IPR availableCOILSCoilCoilcoord: 65..85
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..265
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 203..251
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..159
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 160..194
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold0594contigScaffold0594:32201..33120 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS3.52022-02-26
Diamond on OGS3.5 vs NR2022-02-26
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BraAnng003140.3.5C.1BraAnng003140.3.5C.1Brassica rapa chifumRNAScaffold0594 32201..33120 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BraAnng003140.3.5C.1-P1 ID=BraAnng003140.3.5C.1-P1|Name=BraAnng003140.3.5C.1|organism=Brassica rapa chifu|type=polypeptide|length=266bp
MDFESRTGQIEGPTNPIGGPSNNAQSGQVHAYSVEATGATLGAEALKAME
GRLMNAVRDAVRDAMKGVKEKVTSLSTQLGLLEEEVKSLRLSVPGSDNPA
VQDDGDGSDNSESEEEDGDVGGDKESEEEDGGDNNEPDEEDGGDNNEPDE
EDGSDNDVEDAILDISKDRSRKDDGKEAVPVKKVKVDRGDTVRSPIQLRS
RAAEKSSKGEKKQKAAAEKKAAAAAEKEAAAEKEAAAEKEAAAEKEAAKK
KAAAKKTKKVGKKTE.
back to top