BraAnng002800.3.5C.3-P1 (polypeptide) Brassica rapa chifu

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	BraAnng002800.3.5C.3
Unique Name	BraAnng002800.3.5C.3-P1
Type	polypeptide
Organism	Brassica rapa chifu (field mustard)
Sequence length	99

Homology

[Close]

BLAST of BraAnng002800.3.5C.3 vs. GenBank_protein
Match: EOA12215.1 (hypothetical protein CARUB_v10012758mg, partial [Capsella rubella])

HSP 1 Score: 204 bits (518), Expect = 8.090e-66
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98
            MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD
Sbjct:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98

[Close]

BLAST of BraAnng002800.3.5C.3 vs. GenBank_protein
Match: EOA19047.1 (hypothetical protein CARUB_v10007708mg [Capsella rubella])

HSP 1 Score: 204 bits (518), Expect = 8.360e-66
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98
            MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD
Sbjct:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98

[Close]

BLAST of BraAnng002800.3.5C.3 vs. GenBank_protein
Match: KAF8048193.1 (hypothetical protein N665_2619s0002 [Sinapis alba] >KAF8083109.1 hypothetical protein N665_0791s0006 [Sinapis alba] >KAG2313769.1 hypothetical protein Bca52824_016891 [Brassica carinata])

HSP 1 Score: 204 bits (518), Expect = 8.920e-66
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98
            MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD
Sbjct:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98

[Close]

BLAST of BraAnng002800.3.5C.3 vs. GenBank_protein
Match: KHS50140.1 (hypothetical protein AE0388_0144 [Brevibacterium linens] >BAF01964.1 hypothetical protein [Arabidopsis thaliana])

HSP 1 Score: 204 bits (518), Expect = 3.290e-65
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98
            MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD
Sbjct:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98

[Close]

BLAST of BraAnng002800.3.5C.3 vs. GenBank_protein
Match: CAA7024049.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 204 bits (518), Expect = 3.290e-65
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98
            MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD
Sbjct:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98

[Close]

BLAST of BraAnng002800.3.5C.3 vs. GenBank_protein
Match: XP_028954723.1 (putative uncharacterized protein ART2, partial [Malus domestica])

HSP 1 Score: 201 bits (511), Expect = 6.020e-65
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0

Query:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98
            MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRT NQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD
Sbjct:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTGNQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98

[Close]

BLAST of BraAnng002800.3.5C.3 vs. GenBank_protein
Match: XP_031249140.1 (uncharacterized protein LOC116106967 [Pistacia vera])

HSP 1 Score: 204 bits (518), Expect = 7.170e-65
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98
            MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD
Sbjct:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98

[Close]

BLAST of BraAnng002800.3.5C.3 vs. GenBank_protein
Match: XP_021692584.1 (uncharacterized protein LOC110673727 [Hevea brasiliensis])

HSP 1 Score: 201 bits (511), Expect = 1.010e-64
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0

Query:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98
            MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRT NQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD
Sbjct:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTGNQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98

[Close]

BLAST of BraAnng002800.3.5C.3 vs. GenBank_protein
Match: GAV91289.1 (hypothetical protein CFOL_v3_34686 [Cephalotus follicularis])

HSP 1 Score: 201 bits (511), Expect = 1.010e-64
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0

Query:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98
            MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRT NQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD
Sbjct:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTGNQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98

[Close]

BLAST of BraAnng002800.3.5C.3 vs. GenBank_protein
Match: CAB4268491.1 (unnamed protein product [Prunus armeniaca] >CAB4298957.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 201 bits (511), Expect = 1.040e-64
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0

Query:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98
            MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRT NQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD
Sbjct:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTGNQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98

The following BLAST results are available for this feature:

BLAST of BraAnng002800.3.5C.3 vs. GenBank_protein

BLAST of BraAnng002800.3.5C.3 vs. GenBank_protein
Analysis Date: 2022-02-26 (Diamond on OGS3.5 vs NR)
Total hits: 20


Match Name	E-value	Identity	Description
EOA12215.1	8.090e-66	100.00	hypothetical protein CARUB_v10012758mg, partial [C...	[more]
EOA19047.1	8.360e-66	100.00	hypothetical protein CARUB_v10007708mg [Capsella r...	[more]
KAF8048193.1	8.920e-66	100.00	hypothetical protein N665_2619s0002 [Sinapis alba]...	[more]
KHS50140.1	3.290e-65	100.00	hypothetical protein AE0388_0144 [Brevibacterium l...	[more]
CAA7024049.1	3.290e-65	100.00	unnamed protein product [Microthlaspi erraticum]	[more]
XP_028954723.1	6.020e-65	98.98	putative uncharacterized protein ART2, partial [Ma...	[more]
XP_031249140.1	7.170e-65	100.00	uncharacterized protein LOC116106967 [Pistacia ver...	[more]
XP_021692584.1	1.010e-64	98.98	uncharacterized protein LOC110673727 [Hevea brasil...	[more]
GAV91289.1	1.010e-64	98.98	hypothetical protein CFOL_v3_34686 [Cephalotus fol...	[more]
CAB4268491.1	1.040e-64	98.98	unnamed protein product [Prunus armeniaca] >CAB429...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS3.5
Date Performed: 2022-02-26


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33047	PROTEIN TAR1	coord: 1..98
None	No IPR available	PANTHER	PTHR33047:SF22	SENESCENCE-ASSOCIATED PROTEIN	coord: 1..98

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold0531	contig	Scaffold0531:30458..30754 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS3.5	2022-02-26
Diamond on OGS3.5 vs NR	2022-02-26

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
BraAnng002800.3.5C.3	BraAnng002800.3.5C.3	Brassica rapa chifu	mRNA	Scaffold0531 24470..30754 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>BraAnng002800.3.5C.3-P1 ID=BraAnng002800.3.5C.3-P1|Name=BraAnng002800.3.5C.3|organism=Brassica rapa chifu|type=polypeptide|length=99bp
MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFT
VRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPDN

Orthology

View orthology data for BraAnng002800.3.5C.3-P1