BraAnng002800.3.5C.3-P1 (polypeptide) Brassica rapa chifu

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBraAnng002800.3.5C.3
Unique NameBraAnng002800.3.5C.3-P1
Typepolypeptide
OrganismBrassica rapa chifu (field mustard)
Sequence length99
Homology
BLAST of BraAnng002800.3.5C.3 vs. GenBank_protein
Match: EOA12215.1 (hypothetical protein CARUB_v10012758mg, partial [Capsella rubella])

HSP 1 Score: 204 bits (518), Expect = 8.090e-66
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0
Query:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98
            MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD
Sbjct:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98          
BLAST of BraAnng002800.3.5C.3 vs. GenBank_protein
Match: EOA19047.1 (hypothetical protein CARUB_v10007708mg [Capsella rubella])

HSP 1 Score: 204 bits (518), Expect = 8.360e-66
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0
Query:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98
            MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD
Sbjct:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98          
BLAST of BraAnng002800.3.5C.3 vs. GenBank_protein
Match: KAF8048193.1 (hypothetical protein N665_2619s0002 [Sinapis alba] >KAF8083109.1 hypothetical protein N665_0791s0006 [Sinapis alba] >KAG2313769.1 hypothetical protein Bca52824_016891 [Brassica carinata])

HSP 1 Score: 204 bits (518), Expect = 8.920e-66
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0
Query:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98
            MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD
Sbjct:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98          
BLAST of BraAnng002800.3.5C.3 vs. GenBank_protein
Match: KHS50140.1 (hypothetical protein AE0388_0144 [Brevibacterium linens] >BAF01964.1 hypothetical protein [Arabidopsis thaliana])

HSP 1 Score: 204 bits (518), Expect = 3.290e-65
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0
Query:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98
            MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD
Sbjct:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98          
BLAST of BraAnng002800.3.5C.3 vs. GenBank_protein
Match: CAA7024049.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 204 bits (518), Expect = 3.290e-65
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0
Query:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98
            MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD
Sbjct:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98          
BLAST of BraAnng002800.3.5C.3 vs. GenBank_protein
Match: XP_028954723.1 (putative uncharacterized protein ART2, partial [Malus domestica])

HSP 1 Score: 201 bits (511), Expect = 6.020e-65
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0
Query:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98
            MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRT NQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD
Sbjct:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTGNQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98          
BLAST of BraAnng002800.3.5C.3 vs. GenBank_protein
Match: XP_031249140.1 (uncharacterized protein LOC116106967 [Pistacia vera])

HSP 1 Score: 204 bits (518), Expect = 7.170e-65
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0
Query:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98
            MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD
Sbjct:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98          
BLAST of BraAnng002800.3.5C.3 vs. GenBank_protein
Match: XP_021692584.1 (uncharacterized protein LOC110673727 [Hevea brasiliensis])

HSP 1 Score: 201 bits (511), Expect = 1.010e-64
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0
Query:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98
            MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRT NQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD
Sbjct:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTGNQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98          
BLAST of BraAnng002800.3.5C.3 vs. GenBank_protein
Match: GAV91289.1 (hypothetical protein CFOL_v3_34686 [Cephalotus follicularis])

HSP 1 Score: 201 bits (511), Expect = 1.010e-64
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0
Query:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98
            MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRT NQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD
Sbjct:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTGNQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98          
BLAST of BraAnng002800.3.5C.3 vs. GenBank_protein
Match: CAB4268491.1 (unnamed protein product [Prunus armeniaca] >CAB4298957.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 201 bits (511), Expect = 1.040e-64
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0
Query:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98
            MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRT NQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD
Sbjct:    1 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFTVRIRTGNQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPD 98          
The following BLAST results are available for this feature:
BLAST of BraAnng002800.3.5C.3 vs. GenBank_protein
Analysis Date: 2022-02-26 (Diamond on OGS3.5 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
EOA12215.18.090e-66100.00hypothetical protein CARUB_v10012758mg, partial [C... [more]
EOA19047.18.360e-66100.00hypothetical protein CARUB_v10007708mg [Capsella r... [more]
KAF8048193.18.920e-66100.00hypothetical protein N665_2619s0002 [Sinapis alba]... [more]
KHS50140.13.290e-65100.00hypothetical protein AE0388_0144 [Brevibacterium l... [more]
CAA7024049.13.290e-65100.00unnamed protein product [Microthlaspi erraticum][more]
XP_028954723.16.020e-6598.98putative uncharacterized protein ART2, partial [Ma... [more]
XP_031249140.17.170e-65100.00uncharacterized protein LOC116106967 [Pistacia ver... [more]
XP_021692584.11.010e-6498.98uncharacterized protein LOC110673727 [Hevea brasil... [more]
GAV91289.11.010e-6498.98hypothetical protein CFOL_v3_34686 [Cephalotus fol... [more]
CAB4268491.11.040e-6498.98unnamed protein product [Prunus armeniaca] >CAB429... [more]

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InterPro
Analysis Name: InterProScan on OGS3.5
Date Performed: 2022-02-26
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33047PROTEIN TAR1coord: 1..98
NoneNo IPR availablePANTHERPTHR33047:SF22SENESCENCE-ASSOCIATED PROTEINcoord: 1..98

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold0531contigScaffold0531:30458..30754 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS3.52022-02-26
Diamond on OGS3.5 vs NR2022-02-26
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BraAnng002800.3.5C.3BraAnng002800.3.5C.3Brassica rapa chifumRNAScaffold0531 24470..30754 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BraAnng002800.3.5C.3-P1 ID=BraAnng002800.3.5C.3-P1|Name=BraAnng002800.3.5C.3|organism=Brassica rapa chifu|type=polypeptide|length=99bp
MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKFRRSKGSIGHAFT
VRIRTENQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPDN
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