BraAnng002740.3.5C.1-P1 (polypeptide) Brassica rapa chifu

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	BraAnng002740.3.5C.1
Unique Name	BraAnng002740.3.5C.1-P1
Type	polypeptide
Organism	Brassica rapa chifu (field mustard)
Sequence length	190

Homology

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BLAST of BraAnng002740.3.5C.1 vs. GenBank_protein
Match: XP_033139194.1 (uncharacterized protein LOC117130444 [Brassica rapa] >XP_033139195.1 uncharacterized protein LOC117130444 [Brassica rapa])

HSP 1 Score: 379 bits (972), Expect = 1.830e-132
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0

Query:    1 MVKTALGGRGLWSHCLTDAPKLSKAAGSNESSADGESGSKSVSEEKWEQEDLKVLSILHSSMSPSILEAYSYCESAKDLWSTLNKIYGYISNLCRVFEIKKFINILSQEDEEFTVHLGKFRALWSELEMLRPQSVDPEVLIERREQDKVFCLLLAKRDRNNRCEHCKRDGHTKERCWILNPSLKPAKFK 189
            MVKTALGGRGLWSHCLTDAPKLSKAAGSNESSADGESGSKSVSEEKWEQEDLKVLSILHSSMSPSILEAYSYCESAKDLWSTLNKIYGYISNLCRVFEIKKFINILSQEDEEFTVHLGKFRALWSELEMLRPQSVDPEVLIERREQDKVFCLLLAKRDRNNRCEHCKRDGHTKERCWILNPSLKPAKFK
Sbjct:    1 MVKTALGGRGLWSHCLTDAPKLSKAAGSNESSADGESGSKSVSEEKWEQEDLKVLSILHSSMSPSILEAYSYCESAKDLWSTLNKIYGYISNLCRVFEIKKFINILSQEDEEFTVHLGKFRALWSELEMLRPQSVDPEVLIERREQDKVFCLLLAKRDRNNRCEHCKRDGHTKERCWILNPSLKPAKFK 189

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BLAST of BraAnng002740.3.5C.1 vs. GenBank_protein
Match: XP_033139164.1 (uncharacterized protein LOC117130392 [Brassica rapa])

HSP 1 Score: 306 bits (785), Expect = 5.150e-103
Identity = 172/252 (68.25%), Postives = 176/252 (69.84%), Query Frame = 0

Query:    1 MVKTALGGRGLWSHCLTDAPKLSKAAGSNESSADGESGSKSVSEEKWEQEDLKVLSILHSSMSPSILEAYSYCESAKDLWSTLNKIYGYISNLCRVFEIKKFINILSQEDEEFTVHLGKFRALWSELEMLRPQSVDPEVLIERREQDKVFCLLLA--------------------------------------------------------------KRDRNN-RCEHCKRDGHTKERCWILNPSLKPAKFK 189
            MVKTALGGRGLWSHCLTDAPKLSK AGSNESSADGESGSKSVSEEKWEQEDLKVLSILH S+SPSILEAYSYCESAKDLWSTLNKIYG ISN+ RVFEIKK INILS  DEEFT HLGKFRALWSELEMLRPQSVDPEVLIERREQDKVF LLL                                                               K DR   +CEHCKRDGHTKERCWILNPSLKPA+FK
Sbjct:    1 MVKTALGGRGLWSHCLTDAPKLSKTAGSNESSADGESGSKSVSEEKWEQEDLKVLSILHCSLSPSILEAYSYCESAKDLWSTLNKIYGNISNISRVFEIKKSINILSLLDEEFTAHLGKFRALWSELEMLRPQSVDPEVLIERREQDKVFGLLLTLSPAYSALIQHILRSEKLPTLEEVCSQVQKEEGTIGLFGTKETLSFASQAERSSQPNKAPYKKGDRRGLKCEHCKRDGHTKERCWILNPSLKPAEFK 252

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BLAST of BraAnng002740.3.5C.1 vs. GenBank_protein
Match: XP_033139149.1 (uncharacterized protein LOC117130366 [Brassica rapa] >XP_033139478.1 uncharacterized protein LOC117131460 [Brassica rapa] >XP_033139494.1 uncharacterized protein LOC117131491 [Brassica rapa])

HSP 1 Score: 303 bits (777), Expect = 1.160e-102
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0

Query:    1 MVKTALGGRGLWSHCLTDAPKLSKAAGSNESSADGESGSKSVSEEKWEQEDLKVLSILHSSMSPSILEAYSYCESAKDLWSTLNKIYGYISNLCRVFEIKKFINILSQEDEEFTVHLGKFRALWSELEMLRPQSVDPEVLIERREQDKVFCLLLA 155
            MVKTALGGRGLWSHCLTDAPKLSKAAGSNESSADGESGSKSVSEEKWEQEDLKVLSILHSSMSPSILEAYSYCESAKDLWSTLNKIYGYISNLCRVFEIKKFINILSQEDEEFTVHLGKFRALWSELEMLRPQSVDPEVLIERREQDKVFCLLLA
Sbjct:    1 MVKTALGGRGLWSHCLTDAPKLSKAAGSNESSADGESGSKSVSEEKWEQEDLKVLSILHSSMSPSILEAYSYCESAKDLWSTLNKIYGYISNLCRVFEIKKFINILSQEDEEFTVHLGKFRALWSELEMLRPQSVDPEVLIERREQDKVFCLLLA 155

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BLAST of BraAnng002740.3.5C.1 vs. GenBank_protein
Match: XP_033138880.1 (uncharacterized protein LOC117129681 [Brassica rapa] >XP_033139010.1 uncharacterized protein LOC117129904 [Brassica rapa] >XP_033139244.1 uncharacterized protein LOC117130586 [Brassica rapa])

HSP 1 Score: 305 bits (782), Expect = 1.470e-102
Identity = 172/252 (68.25%), Postives = 176/252 (69.84%), Query Frame = 0

Query:    1 MVKTALGGRGLWSHCLTDAPKLSKAAGSNESSADGESGSKSVSEEKWEQEDLKVLSILHSSMSPSILEAYSYCESAKDLWSTLNKIYGYISNLCRVFEIKKFINILSQEDEEFTVHLGKFRALWSELEMLRPQSVDPEVLIERREQDKVFCLLLA--------------------------------------------------------------KRDRNN-RCEHCKRDGHTKERCWILNPSLKPAKFK 189
            MVKTALG RGLWSHCLTDAPKLSK AGSNESSADGESGSKSVSEEKWEQEDLKVLSILHSS+SPSILEAYSYCESAKDLWSTLNKIYG ISN+ RVFEIKK INILS  DEEFT HLGKFRALWSELEMLRPQSVDPEVLIERREQDKVF LLL                                                               K DR   +CEHCKRDGHTKERCWILNPSLKPA+FK
Sbjct:    1 MVKTALGWRGLWSHCLTDAPKLSKTAGSNESSADGESGSKSVSEEKWEQEDLKVLSILHSSLSPSILEAYSYCESAKDLWSTLNKIYGNISNISRVFEIKKSINILSLLDEEFTAHLGKFRALWSELEMLRPQSVDPEVLIERREQDKVFGLLLTLSPAYSALIQHILRSEKLPTLEEVCSQVQKEEGTIGLFGTKETLSFASQAERSSQPNKAPYKKGDRRGLKCEHCKRDGHTKERCWILNPSLKPAEFK 252

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BLAST of BraAnng002740.3.5C.1 vs. GenBank_protein
Match: XP_033139048.1 (uncharacterized protein LOC117129970 [Brassica rapa])

HSP 1 Score: 256 bits (654), Expect = 8.190e-83
Identity = 143/252 (56.75%), Postives = 162/252 (64.29%), Query Frame = 0

Query:    1 MVKTALGGRGLWSHCLTDAPKLSKAAGSNESSADGESGSKSVSEEKWEQEDLKVLSILHSSMSPSILEAYSYCESAKDLWSTLNKIYGYISNLCRVFEIKKFINILSQEDEEFTVHLGKFRALWSELEMLRPQSVDPEVLIERREQDKVFCLLLA--------------------------------------------------------------KRDRNN-RCEHCKRDGHTKERCWILNPSLKPAKFK 189
            + KTA+GG+GLWSHC++DAP  SK   +    A+GE+ SK VSE++W QEDL VLSILHSS+ PSILEAYSYCESAK+LWSTL KIYG +SNL RVFEIKK IN +SQE+EEFT HLG+FRALWSELEMLRPQSV+P+VL ERREQDKVF LLL                                                               K DR   +CEHCKRDGHTKERCWILNPSLKPAKFK
Sbjct:   24 LAKTAIGGKGLWSHCISDAPNHSKGVATQ---AEGEASSKPVSEDRWLQEDLTVLSILHSSLDPSILEAYSYCESAKELWSTLKKIYGNLSNLSRVFEIKKAINNMSQEEEEFTTHLGRFRALWSELEMLRPQSVEPDVLNERREQDKVFGLLLTLSPAFSDLTKHLLRSEKLPTLEEVCAQVQKEEGSHGLFGAKEPLTFASHAEGSSQSMKPVYKKGDRRGLKCEHCKRDGHTKERCWILNPSLKPAKFK 272

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BLAST of BraAnng002740.3.5C.1 vs. GenBank_protein
Match: XP_013613740.1 (PREDICTED: uncharacterized protein LOC106319884 [Brassica oleracea var. oleracea])

HSP 1 Score: 200 bits (509), Expect = 2.410e-62
Identity = 102/142 (71.83%), Postives = 119/142 (83.80%), Query Frame = 0

Query:    1 MVKTALGGRGLWSHCLTDAPKLSKAAGSNESSADGESGSKSVSEEKWEQEDLKVLSILHSSMSPSILEAYSYCESAKDLWSTLNKIYGYISNLCRVFEIKKFINILSQEDEEFTVHLGKFRALWSELEMLRPQSVDPEVLIE 142
            + KTA+GG+GLWSHC++DAP  SK   +    A+GE+GSK VSE++W QEDL VLSIL SS+ PSILEAYSYCESAK+LWSTL KIYG +SNL RVFEIKK IN +SQE+EEFT HLGKFRALWSELEMLRPQS +P+VL E
Sbjct:   24 LTKTAIGGKGLWSHCISDAPNDSKGVATQ---AEGEAGSKPVSEDRWLQEDLTVLSILQSSLDPSILEAYSYCESAKELWSTLKKIYGNLSNLSRVFEIKKAINNMSQEEEEFTTHLGKFRALWSELEMLRPQSFEPDVLNE 162

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BLAST of BraAnng002740.3.5C.1 vs. GenBank_protein
Match: XP_022553579.1 (uncharacterized protein LOC106400348 [Brassica napus])

HSP 1 Score: 201 bits (511), Expect = 6.000e-59
Identity = 119/256 (46.48%), Postives = 146/256 (57.03%), Query Frame = 0

Query:    1 MVKTALGGRGLWSHCLT-DAPKLSKAAGSNESSADGESGSKSVSEEKWEQEDLKVLSILHSSMSPSILEAYSYCESAKDLWSTLNKIYGYISNLCRVFEIKKFINILSQEDEEFTVHLGKFRALWSELEMLRPQSVDPEVLIERREQDKVFCLLLA--------------------------------------------------KRDR-----------------NNRCEHCKRDGHTKERCWILNPSLKPAKF 188
            MVKTA+G +GLW H  + +APK     G      D ES  +SV E KW+QED+ V+S+LH+S+ P+IL+AYSYCE+AK+LW TL K+YG +SNL RVFE+KK IN L+Q+D EFT HLG+FR LWSELEMLRP +VDPE+L ERREQDKVF LLL                                                   + DR                 N  C+HCKR GH K +CWIL+P LKPAKF
Sbjct:   18 MVKTAVGSKGLWRHITSGEAPKAITQEG------DAESSEESVVE-KWQQEDMMVMSVLHASLEPAILDAYSYCETAKELWDTLKKVYGNVSNLNRVFEVKKAINELTQDDMEFTKHLGRFRTLWSELEMLRPSTVDPELLNERREQDKVFGLLLTLNASYNGLIQHMLRSEKLPDLEDVCAQIQREQGSMGLFGGKGDLSLANAVQSDREEPPQANKAGYNKYEKFNGNCDHCKRYGHKKIQCWILHPHLKPAKF 266

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BLAST of BraAnng002740.3.5C.1 vs. GenBank_protein
Match: XP_022566213.1 (uncharacterized protein LOC106357015 [Brassica napus])

HSP 1 Score: 201 bits (511), Expect = 6.420e-59
Identity = 119/256 (46.48%), Postives = 146/256 (57.03%), Query Frame = 0

Query:    1 MVKTALGGRGLWSHCLT-DAPKLSKAAGSNESSADGESGSKSVSEEKWEQEDLKVLSILHSSMSPSILEAYSYCESAKDLWSTLNKIYGYISNLCRVFEIKKFINILSQEDEEFTVHLGKFRALWSELEMLRPQSVDPEVLIERREQDKVFCLLLA--------------------------------------------------KRDR-----------------NNRCEHCKRDGHTKERCWILNPSLKPAKF 188
            MVKTA+G +GLW H  + +APK     G      D ES  +SV E KW+QED+ V+S+LH+S+ P+IL+AYSYCE+AK+LW TL K+YG +SNL RVFE+KK IN L+Q+D EFT HLG+FR LWSELEMLRP +VDPE+L ERREQDKVF LLL                                                   + DR                 N  C+HCKR GH K +CWIL+P LKPAKF
Sbjct:   18 MVKTAVGSKGLWRHITSGEAPKAITQEG------DAESSEESVVE-KWQQEDMMVMSVLHASLEPAILDAYSYCETAKELWDTLKKVYGNVSNLNRVFEVKKAINELTQDDMEFTKHLGRFRTLWSELEMLRPSTVDPELLNERREQDKVFGLLLTLNASYNGLIQHMLRSEKLPDLEDVCAQIQREQGSMGLFGGKGDLSLANAVQSDREEPPQANKAGYNKYEKFNGNCDHCKRYGHKKIQCWILHPHLKPAKF 266

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BLAST of BraAnng002740.3.5C.1 vs. GenBank_protein
Match: XP_019098355.1 (PREDICTED: uncharacterized protein LOC109131639 [Camelina sativa])

HSP 1 Score: 197 bits (502), Expect = 6.440e-59
Identity = 113/241 (46.89%), Postives = 138/241 (57.26%), Query Frame = 0

Query:    3 KTALGGRGLWSHCLTDAPKLSKAAGSNESSADGESGSKSVSEEKWEQEDLKVLSILHSSMSPSILEAYSYCESAKDLWSTLNKIYGYISNLCRVFEIKKFINILSQEDEEFTVHLGKFRALWSELEMLRPQSVDPEVLIERREQDKVFCLLLAKRDRNNR------------------------------------------------------CEHCKRDGHTKERCWILNPSLKPAKFK 189
            +TALGGRGLWSH  TD        G +E +++ E   +S  + KW QED  VLS+L +S+  SILEAYSYCE+AK+LW TL  +YG +SNL RVFE+KK IN L+Q+D EFT HLGKFRALWSEL+MLRP ++DP VL ER+EQDKVF LLL      N                                                       C+HCKR GH K++CWIL+P LK AKFK
Sbjct:   26 RTALGGRGLWSHVETDYVPKQNLKGEDEGASEVEVEEESERKAKWFQEDQVVLSVLQNSLDTSILEAYSYCETAKELWETLKGVYGNVSNLTRVFEVKKAINELNQDDMEFTKHLGKFRALWSELDMLRPSTLDPMVLTERKEQDKVFGLLLTLNPSFNDLLKHILRAEKLPSFEDICSQIQREQGSFDLFSGKGELVTANKGVYKQEDRKVWICDHCKRRGHMKDKCWILHPHLKTAKFK 266

[Close]

BLAST of BraAnng002740.3.5C.1 vs. GenBank_protein
Match: XP_022573001.1 (uncharacterized protein LOC111214429 [Brassica napus])

HSP 1 Score: 201 bits (511), Expect = 1.900e-58
Identity = 119/256 (46.48%), Postives = 146/256 (57.03%), Query Frame = 0

Query:    1 MVKTALGGRGLWSHCLT-DAPKLSKAAGSNESSADGESGSKSVSEEKWEQEDLKVLSILHSSMSPSILEAYSYCESAKDLWSTLNKIYGYISNLCRVFEIKKFINILSQEDEEFTVHLGKFRALWSELEMLRPQSVDPEVLIERREQDKVFCLLLA--------------------------------------------------KRDR-----------------NNRCEHCKRDGHTKERCWILNPSLKPAKF 188
            MVKTA+G +GLW H  + +APK     G      D ES  +SV E KW+QED+ V+S+LH+S+ P+IL+AYSYCE+AK+LW TL K+YG +SNL RVFE+KK IN L+Q+D EFT HLG+FR LWSELEMLRP +VDPE+L ERREQDKVF LLL                                                   + DR                 N  C+HCKR GH K +CWIL+P LKPAKF
Sbjct:   18 MVKTAVGSKGLWRHITSGEAPKAITQEG------DAESSEESVVE-KWQQEDMMVMSVLHASLEPAILDAYSYCETAKELWDTLKKVYGNVSNLNRVFEVKKAINELTQDDMEFTKHLGRFRTLWSELEMLRPSTVDPELLNERREQDKVFGLLLTLNASYNGLIQHMLRSEKLPELEDVCAQIQREQGSMGLFGGKGDLSLANVVQSDREEPPQANKAGYNKYEKFNGNCDHCKRYGHKKIQCWILHPHLKPAKF 266

The following BLAST results are available for this feature:

BLAST of BraAnng002740.3.5C.1 vs. GenBank_protein

BLAST of BraAnng002740.3.5C.1 vs. GenBank_protein
Analysis Date: 2022-02-26 (Diamond on OGS3.5 vs NR)
Total hits: 20


Match Name	E-value	Identity	Description
XP_033139194.1	1.830e-132	100.00	uncharacterized protein LOC117130444 [Brassica rap...	[more]
XP_033139164.1	5.150e-103	68.25	uncharacterized protein LOC117130392 [Brassica rap...	[more]
XP_033139149.1	1.160e-102	100.00	uncharacterized protein LOC117130366 [Brassica rap...	[more]
XP_033138880.1	1.470e-102	68.25	uncharacterized protein LOC117129681 [Brassica rap...	[more]
XP_033139048.1	8.190e-83	56.75	uncharacterized protein LOC117129970 [Brassica rap...	[more]
XP_013613740.1	2.410e-62	71.83	PREDICTED: uncharacterized protein LOC106319884 [B...	[more]
XP_022553579.1	6.000e-59	46.48	uncharacterized protein LOC106400348 [Brassica nap...	[more]
XP_022566213.1	6.420e-59	46.48	uncharacterized protein LOC106357015 [Brassica nap...	[more]
XP_019098355.1	6.440e-59	46.89	PREDICTED: uncharacterized protein LOC109131639 [C...	[more]
XP_022573001.1	1.900e-58	46.48	uncharacterized protein LOC111214429 [Brassica nap...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS3.5
Date Performed: 2022-02-26


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 47..130 e-value: 1.3E-11 score: 44.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..45
None	No IPR available	PANTHER	PTHR34222:SF6	OS02G0671800 PROTEIN	coord: 46..153
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 46..153

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold0482	contig	Scaffold0482:42975..43544 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS3.5	2022-02-26
Diamond on OGS3.5 vs NR	2022-02-26

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
BraAnng002740.3.5C.1	BraAnng002740.3.5C.1	Brassica rapa chifu	mRNA	Scaffold0482 40521..45755 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>BraAnng002740.3.5C.1-P1 ID=BraAnng002740.3.5C.1-P1|Name=BraAnng002740.3.5C.1|organism=Brassica rapa chifu|type=polypeptide|length=190bp
MVKTALGGRGLWSHCLTDAPKLSKAAGSNESSADGESGSKSVSEEKWEQE
DLKVLSILHSSMSPSILEAYSYCESAKDLWSTLNKIYGYISNLCRVFEIK
KFINILSQEDEEFTVHLGKFRALWSELEMLRPQSVDPEVLIERREQDKVF
CLLLAKRDRNNRCEHCKRDGHTKERCWILNPSLKPAKFK.

Orthology

View orthology data for BraAnng002740.3.5C.1-P1