BraAnng002240.3.5C.1-P1 (polypeptide) Brassica rapa chifu

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBraAnng002240.3.5C.1
Unique NameBraAnng002240.3.5C.1-P1
Typepolypeptide
OrganismBrassica rapa chifu (field mustard)
Sequence length269
Homology
BLAST of BraAnng002240.3.5C.1 vs. GenBank_protein
Match: KAG5397404.1 (hypothetical protein IGI04_019218 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 173 bits (438), Expect = 7.740e-45
Identity = 148/360 (41.11%), Postives = 162/360 (45.00%), Query Frame = 0
Query:    1 MGCLVSPHRTFVGVPQHTQDIRGCL-------------CVSICFRXXXXXXXXXXXXHISARWSLDSARWPFPWTVWVIFGPRGLLFSTHRTSVGVRQQ----------HTGHPWLFVDIR---------------------------------------------QHKHDVYGC----RVCSCVSVCVXXXXXXXXXXSWLSVQH--TQDVLWLS-VCVRVYXXXXXXXXXXPRQHNMTFVGVRQHHTGRSSCVRQHTPD-----VRGXXXXXXXXXKESVAVHQYTYQPVGPWTQHADPSRGLFGCLAP-WAVCSVHTGRPWV----------VRQHTQDVHVCQLAXXXXXXLSVCV 269
            +GCL S HRT VGV QHTQD+ GCL             CVS+C RXXXXXXXXXXX HISARWSLDSARWPFPWTV VI    G  FSTHR  V VR            HTGHPWL V +                                              Q+  DV GC    R   CVSV             WLS+    ++ VL LS + + V             Q+     G    HTGR     Q         VR          + SVAVHQYTYQ VGPWTQHA PSRGLFG   P WA+CS HTGR WV          VRQHTQDV  C         LS+CV
Sbjct:   70 VGCLFSTHRTSVGVRQHTQDVCGCLNTXXXXXAVRVCPCVSVC-RXXXXXXXXXXXVHISARWSLDSARWPFPWTVRVILAHVGCQFSTHRMPVVVRNHTQDVRGCPSAHTGHPWLSVCVSVXXXXXXXXXXXXXSTHISTLVLGLSTLALPVDSSGDFGPRGLSVQYTQDVCGCPSAHRGRLCVSVSTHRTSVVVRVCLWLSISTHISKLVLGLSTLTLPVDCLGDFGPRGLSVQYTQDISGCPPAHTGRLCVSPQQDVHGCQCGVRVCPCVSVSTHRTSVAVHQYTYQHVGPWTQHAGPSRGLFGRFWPTWAICSEHTGRLWVSVSTQRTFVCVRQHTQDVRGCP-------WLSMCV 421          
BLAST of BraAnng002240.3.5C.1 vs. GenBank_protein
Match: KAG5393539.1 (hypothetical protein IGI04_023502 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 161 bits (408), Expect = 8.070e-41
Identity = 134/313 (42.81%), Postives = 138/313 (44.09%), Query Frame = 0
Query:    4 LVSPHRTFVGVPQHTQDIRGCLCVSICFRXXXXXXXXXXXXHISARWSLDSARWPFPWTVWVIFGPRGLLFSTHRTSVGVRQQHTGHPWLFVDIRQHKHDVYGC--------------RVCSCVSVCVXXXXXXXXXXSWLSVQ----HTQDVLWLSV--------------------------------CVRVYXXXXXXXXXXPRQHNMTFVGVRQHHTGRSSCVRQHTPDVRGXXXXXXXXXKESVAVHQYTYQPVGPWTQHADPSRGLFGCLAP-WAVCSVHTGRPWV----------VRQHTQDVHVC 255
             VS HRT V V       R C CV IC R            HISARWSLDSAR PFPWTVWVI    G LFSTHRTSVGVRQ              H  DVYGC              RVCSCVS+  XXXXXXXXXX          HT    WL V                                 VRV            R    T VG+RQH      C   HT    G         + SVAVHQYTYQ  GPWTQHA PS GLFG   P WAVCSVHTG  WV          VRQHTQD+  C
Sbjct:  626 FVSTHRTSVAV-------RVCPCVYICVRQHTHDFRGCRSVHISARWSLDSARLPFPWTVWVILAHLGCLFSTHRTSVGVRQ--------------HTQDVYGCPLVSVSXXXXXXXVRVCSCVSISXXXXXXXXXXXXXXXXXXXPAHTGRP-WLCVFXXXXXXXXXXXXXXXILARWSLDSTHWPFPWTVRVILAHVACLFSTHR----TSVGIRQHTQDVRGCPSAHT----GRPWVSVSTYRMSVAVHQYTYQHAGPWTQHAGPSCGLFGLFWPTWAVCSVHTGCMWVSVSTHKTYVSVRQHTQDIRGC 908          
BLAST of BraAnng002240.3.5C.1 vs. GenBank_protein
Match: KAG5373800.1 (hypothetical protein IGI04_042887 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 147 bits (372), Expect = 4.450e-36
Identity = 112/280 (40.00%), Postives = 123/280 (43.93%), Query Frame = 0
Query:   17 HTQDIRGC--------------LCVSICFRXXXXXXXXXXXXHISARWSLDSARWPFPWTVWVIFGPRGLLFSTHRTSVGVRQQHTGHPWLFVDIRQHKHDVYGCRVCSCVSVCVXXXXXXXXXXSWLSVQH--TQDVLWLS--------VCVRVYXXXXXXXXXXPRQHNMTFVGVRQHHTGRSSCVRQHTPDVRGXXXXXXXXXKESVAVHQYTYQPVGPWTQHADPSRGLFGCLAPWAVCSVHTGRPWV-VRQHTQDV--HVCQLAXXXXXXLSVCV 269
            +TQD+RGC                 S+C R             ISA WSLDSARWPFPWTVWVI    G LFST RTSVGVRQ              H H+V GC    CVSVCV           WLS+    T  VL LS          + V             Q+     G    HTGRS CV   T              + SVAVHQYTYQ V PWTQHA P   ++  LA WAVCSV TGRP V    H+  V  H C LA      L V V
Sbjct:  481 YTQDVRGCPQAHTGRPWVXXXXXXXSVCVRQHTQVVRGCPSVDISACWSLDSARWPFPWTVWVILAHVGCLFSTQRTSVGVRQ--------------HTHEVCGCL---CVSVCVRLCPSAHTGCPWLSISTHITTLVLGLSKXXXXXXXXALPVECLGDFGPRGLSVQYTQDIRGCPSAHTGRS-CVLVSTHRASVAVRVCPSAHRTSVAVHQYTYQHVVPWTQHAGPFGTVWVILATWAVCSVLTGRPLVSASTHSTSVAVHGCPLAHIGRPWLFVWV 742          
BLAST of BraAnng002240.3.5C.1 vs. GenBank_protein
Match: KAG5384685.1 (hypothetical protein IGI04_036155 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 139 bits (350), Expect = 4.200e-33
Identity = 126/360 (35.00%), Postives = 143/360 (39.72%), Query Frame = 0
Query:    1 MGCLVSPHRTFVGVPQHTQDIRGC--------LCVSICFRXXXXXXXXXXXXHI-----------------------------------------SARWSLDSARWPFPWTVWVIFGPRGLLFSTHRTSVGVRQQHTGHPW--LFVDIRQHKHDVYGCRVCSCV-------------SVCVXXXXXXXXXXSWLSVQHTQDV----------LWLSVCVRVYXXXXXXXXXX----------PR----QHNMTFVGVRQHHTGRS-SCVRQHTP--DVRGXXXXXXXXXKESVAVHQYTYQPVGPWTQHADPSRGLFGCLAPWAVCSVHTGRPWVVRQHTQDVHVCQLAXXXXXXLSVCV 269
            +GCL   HRT VG  QHT DIRGC        L +S+C R          XX                                           SARWSLDSARWPFPWTVWVIF   G LFST RTSVGVRQ HT +    L++ + +H+  V   RVC CV             +V +            LSVQ+ QDV          L +SV   +                     PR    Q+     G    HTG     V +H     VR          K SVA+HQY YQ  GPWTQH  PSRGLFG                 VRQHTQDV VC  A      LSVCV
Sbjct:  400 VGCLFRTHRTSVGARQHTHDIRGCPWLAHTGRLWLSVCIRVCPCVSVSTDXXXXXXXXXXXXXXXXPSAHTGYLWXXXXVCQXXXXXXXXXXXXXSARWSLDSARWPFPWTVWVIFAHVGCLFSTPRTSVGVRQ-HTQNVCGCLWLSVSKHRTSV-AVRVCPCVXXXXXXXXXAVHHAVALPVDCSGNFGPRGLSVQYPQDVHVCLSAHTGRLCVSVSTHISTLVVGLSMLTLPVDCLGDFGPRGLSVQYTQDVCGCPPAHTGSPWLSVSKHRTFVAVRVCPCVSVSTHKTSVALHQYIYQHAGPWTQHGGPSRGLFGTSVG-------------VRQHTQDVRVCPSAHTGRSWLSVCV 744          
BLAST of BraAnng002240.3.5C.1 vs. GenBank_protein
Match: KAG5373969.1 (hypothetical protein IGI04_042716 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 139 bits (349), Expect = 5.840e-33
Identity = 153/396 (38.64%), Postives = 165/396 (41.67%), Query Frame = 0
Query:    1 MGCLVSPHRTFVGVPQHTQDIRGCL-----------------CVSICFRXXXXXXXXXXXXHISARWSLDSARWPFPWTVWVIFGPRGLLFSTHRTSVGVRQQ----------HTGHPWLFVDIRQHKHD----------------VYGCRVCSCVSVCVXXXXXXXXXXSW--------------------------LSVQHTQDVLW-------------------LSVCV-RVYXXXXXXXXXXPRQHNMTFVGVRQHHTGRSSCV-----------------------------------------RQHTPDVRGXXXXXXXXXKESVAVHQYTYQPVGPWTQHADPSRGLFGCLAP-WAVCSVHTGRPWV----------VRQHTQDVHVC 255
            MGCL S HR+ VGV QHTQ +RGCL                 CV +C  XXXXXXXXX   HISARWSLDSARWPF WTVWVI    G L STHRTSVGVRQ           H G PWL V +                      V G    +    C XXXXXXXXXX                            L VQ+TQD+                     ++VCV    XXXXXXXXXX  Q+    VG    H   S  +                                            T DVR          + SV VHQYTYQ V PWTQHA PS GLFG   P WAVCSVH GR WV          VRQHTQD   C
Sbjct: 1805 MGCLFSTHRSSVGVRQHTQVVRGCLWLSVSTHRTSVAVRLCSCVFVCVXXXXXXXXXXTSVHISARWSLDSARWPFLWTVWVILAHVGCLLSTHRTSVGVRQHTQDIRVCPSAHRGRPWLSVCVXXXXXXXXXXXXXXXSTHISMLVLGLSTLTLPVDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFGPRGLYVQYTQDICGCPSAHTGRTCVSVSTHRTPVAVCVCPXXXXXXXXXXXXVHQYTYQHVGPWTQHADPSRGLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTQDVRVCPCVSVSSHRTSVVVHQYTYQQVCPWTQHAGPSPGLFGLFWPTWAVCSVHIGRLWVSISKHRTSVCVRQHTQDGRPC 2200          
BLAST of BraAnng002240.3.5C.1 vs. GenBank_protein
Match: KAG5384944.1 (hypothetical protein IGI04_036414 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 138 bits (347), Expect = 9.890e-33
Identity = 116/302 (38.41%), Postives = 128/302 (42.38%), Query Frame = 0
Query:   14 VPQHTQDIRGCLCVSICFRXXXXXXXXXXXXHISARWSLDSARWPFPWTVWVIFGPRGLLFSTHRTSVGVRQQ----------HTGHPWLFVDI---RQHKHDVYGCRVCSCVSVCVXXXXXXXXXXSW--------LSVQHTQDV----------LWLSVCVRVYXXXXXXXXXXPRQHNMTFVGVRQHHTGR-------------------SSCVRQHTPD------------VRGXXXXXXXXXKESVAVHQYTYQPVGPWTQHADPSRGLF--------GCLAPWAV-CSVHTGRPWV 244
            V QHTQD+RGC  V                 HISARWSLDSARWPFPWTVWVI    G LFSTHRTSVGVRQ           HTG PWL V +              + + +S  V                    LSVQ+T DV          LW  VCVRV            RQ   T V V  H+T +                   S  VRQ T              VR          + SVAVHQYTYQ VGPWTQHADPSRGLF        GC + +    S HTGR W+
Sbjct:  272 VCQHTQDVRGCPSV-----------------HISARWSLDSARWPFPWTVWVILAHVGCLFSTHRTSVGVRQHTQDVRGCPSAHTGRPWLSVCVCVXXXXXXXXXXXXISTHISTLVLGLSTLTRPVDCSGDFGPRGLSVQYTHDVCGCPPAHTGRLWPFVCVRV-----CLSVSISRQR--TSVAVH-HYTDQHXXXXXXXXXXXXXXXXXLSVAVRQQTXXXXXXLTNTTSVAVRLCPCVSVSTHRTSVAVHQYTYQHVGPWTQHADPSRGLFVQYTQDVRGCPSAYTGRLSAHTGRLWL 548          
BLAST of BraAnng002240.3.5C.1 vs. GenBank_protein
Match: KAG5373877.1 (hypothetical protein IGI04_042803 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 136 bits (342), Expect = 4.240e-32
Identity = 125/278 (44.96%), Postives = 135/278 (48.56%), Query Frame = 0
Query:    1 MGCLVSPHRTFVGVPQHTQDIRGCLCVSICFRXXXXXXXXXXXXHISARWSLDSARWPFPWTVWVIFGPRGLLFSTHRTSVGVRQQHTGHPWLFVDIRQHKHDVYGCRVCSCVSVC-----VXXXXXXXXXXSWLSVQHTQDVLWLSVCVRVYXXXXXXXXXXPRQHNMTFVGVRQHHTGRSSCVRQHTPDVRGXXXXXXXXXKESV----AVHQYTYQPVGPWTQHADPSRGLFGCLAPWAVCSVHTGRPWVVRQHTQDVHVCQLAXXXXXXLSVCV 269
            +GCL S  RT VGV QHTQD+RGC CVS+   XXXXXXXXXXX HISAR SLDSA WPFPWT+WVI    G LFSTHRTSVGVRQ HT H  +FV  RQH + V   R C CVSV      V XXXXX  XX                    Y            Q+     G    HTGRS                   XX         VHQYTYQ    WTQHA  SRGLF                  V QH+QD+H C         +SVCV
Sbjct:  558 VGCLFSTQRTSVGVRQHTQDVRGCSCVSVFXXXXXXXXXXXXXVHISARCSLDSAHWPFPWTLWVILVHVGCLFSTHRTSVGVRQ-HT-HDVVFV--RQHINAV---RSCPCVSVSTHRTSVCXXXXXQVXXXXXXXXXXXXXXXXXXXXXTYQHGDFGPCGLSVQYAQDVRGCPSAHTGRSXXXXXXXXXXXXVRVCPVCXXXXXXXXXXTVHQYTYQHASRWTQHAGHSRGLFRTSV-------------AVHQHSQDIHGCPC-------VSVCV 808          
BLAST of BraAnng002240.3.5C.1 vs. GenBank_protein
Match: KAG5384476.1 (hypothetical protein IGI04_035946 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 135 bits (339), Expect = 1.260e-31
Identity = 126/278 (45.32%), Postives = 128/278 (46.04%), Query Frame = 0
Query:    3 CLVSPHRTFVGVPQHTQD-IRGCLCVSICFRXXXXXXXXXXXXHISARWSLDSARWPFPWTVWVIFGPRGLLFSTHRTSVGVRQQHTGHPWLFVDIRQHKHDVYGCRVCSCVSVCVXXXXXXXXXXSWLSVQHTQDVLWLSVCVRVYXXXXXXXXXXPRQHNMTFVGVRQHHTGRSSCVRQHTPDVRGXXXXXXXXXKESVAVHQYTYQPVGPWTQHADPSRGLFGCLA-PWAV--------CSVHTGRPWV-VRQHTQDVHVCQLAXXXXXXLSVCV 269
            CL S H T VGV QHTQD +RGC  V                 HISARWS DSARWPFPWTVWVI    G LFSTHRTSVGVRQ              H  DV GC                          HT    WLS CV V XXXXXXXXXX                               XXXXXXXXX     VHQYTYQ VGPWTQHADPS GLFG L  PW          C   T R  V V QHTQ+V  C  A      LSVCV
Sbjct: 1721 CLFSTHGTSVGVRQHTQDDVRGCPSV-----------------HISARWSFDSARWPFPWTVWVILAHVGYLFSTHRTSVGVRQ--------------HTEDVSGC-----------------------PSAHTGRQ-WLSWCVYVXXXXXXXXXXXXXXXXXXXXXXXX------------------XXXXXXXXXXXXXXVHQYTYQHVGPWTQHADPSLGLFGTLTFPWTARVILAHVGCLFSTHRTSVGVSQHTQNVCGCPSAHTGRQWLSVCV 1925          
BLAST of BraAnng002240.3.5C.1 vs. GenBank_protein
Match: KAG5384913.1 (hypothetical protein IGI04_036383 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 132 bits (333), Expect = 3.090e-31
Identity = 117/251 (46.61%), Postives = 130/251 (51.79%), Query Frame = 0
Query:    1 MGCLVSPHRTFVGVPQHTQDIRGCLCVSICFRXXXXXXXXXXXXHISARWSLDSARWPFPWTVWVIFGPRGLLFSTHRTSVGVRQQHTGHPWLFVDIRQHKHDVYGCRVCSCVSV-----------------CVXXXXXXXXXXSWLSVQHTQDVLWLSVCVRVYXXXXXXXXXXPR----QHNMTFVGVRQHHTGR---SSCVRQHTPDVRGXXXXXXXXXKESVAVHQYTYQPVGPWTQHADPSRGLFG 227
            +GCL S HRT VGV QHTQ + GC CV +C  XXXXXXXXXXXX ISAR SL SARWPFPWTVWVIFGPRGL       SV   Q   G PWL V    H+  V   RVC CVS+                   XXXX       WLS+      L L + + +           PR    Q+     G    HTG    S    + +  VR     XXXXX     VHQYTY  VGPWTQHA+PSRGLFG
Sbjct:  348 VGCLFSTHRTSVGVRQHTQVVCGCPCVFVCXXXXXXXXXXXXXXXISARGSLASARWPFPWTVWVIFGPRGL-------SVQYTQDVCGCPWLSVST--HRMSV-AVRVCPCVSINTPGRXXXXXXXXXXXXXXXXXXSAHTGRMWLSISKHISTLVLGLSM-LALPVGCLGDFGPRGLSVQYTQEVCGCLSTHTGHPWVSVSTHRTSVAVRVCLCVXXXXXXXXXXVHQYTYHHVGPWTQHANPSRGLFG 587          
BLAST of BraAnng002240.3.5C.1 vs. GenBank_protein
Match: KAG5384569.1 (hypothetical protein IGI04_036039 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 131 bits (330), Expect = 1.630e-30
Identity = 126/247 (51.01%), Postives = 132/247 (53.44%), Query Frame = 0
Query:   16 QHTQDIRGCLCVSICFRXXXXXXXXXXXXHISARWSLDSARWPFPWTVWVIFGPRGLLFSTHRTSVGVRQQHTGHPWLFVDIRQHKHDVYGCRVCSC----VSVCVXXXXXXXXXXSWLSV----------QHTQDVLWLSVCVRVYXXXXXXXXXX--------------PR----QHNMTFVGVRQHHTGR---SSCVRQHTPDVRGXXXXXXXXXKESVAVHQYTYQPVGPWTQHADPSRGLFG 227
            Q+TQD+RGC CVS+C R XXXXXXXXXXX  SARWSLDSAR PFPWTVWVI    G LFSTHRTSVGVRQ              H  DV GC   S      SVCV X         W+SV          QHTQDV   + CV V XXXXXXXXXX              PR    Q           HTGR   S CVR   P V           + SVAV QYTYQ VGPWTQHA PSRGLFG
Sbjct:  657 QYTQDVRGCPCVSVCVRQXXXXXXXXXXXXXSARWSLDSARRPFPWTVWVILSHVGCLFSTHRTSVGVRQ--------------HTQDVCGCFWLSVSTHGTSVCVRX---------WVSVXXXXXXXXXXQHTQDVRGCA-CVSVXXXXXXXXXXXXXXXXXXXXSGNFGPRGLSVQXXXXXXXXXXXHTGRPWLSVCVRL-CPYVS------VSTHRTSVAVPQYTYQHVGPWTQHAGPSRGLFG 872          
The following BLAST results are available for this feature:
BLAST of BraAnng002240.3.5C.1 vs. GenBank_protein
Analysis Date: 2022-02-26 (Diamond on OGS3.5 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
KAG5397404.17.740e-4541.11hypothetical protein IGI04_019218 [Brassica rapa s... [more]
KAG5393539.18.070e-4142.81hypothetical protein IGI04_023502 [Brassica rapa s... [more]
KAG5373800.14.450e-3640.00hypothetical protein IGI04_042887 [Brassica rapa s... [more]
KAG5384685.14.200e-3335.00hypothetical protein IGI04_036155 [Brassica rapa s... [more]
KAG5373969.15.840e-3338.64hypothetical protein IGI04_042716 [Brassica rapa s... [more]
KAG5384944.19.890e-3338.41hypothetical protein IGI04_036414 [Brassica rapa s... [more]
KAG5373877.14.240e-3244.96hypothetical protein IGI04_042803 [Brassica rapa s... [more]
KAG5384476.11.260e-3145.32hypothetical protein IGI04_035946 [Brassica rapa s... [more]
KAG5384913.13.090e-3146.61hypothetical protein IGI04_036383 [Brassica rapa s... [more]
KAG5384569.11.630e-3051.01hypothetical protein IGI04_036039 [Brassica rapa s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold0369contigScaffold0369:1804..2610 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS3.52022-02-26
Diamond on OGS3.5 vs NR2022-02-26
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BraAnng002240.3.5C.1BraAnng002240.3.5C.1Brassica rapa chifumRNAScaffold0369 1802..5124 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BraAnng002240.3.5C.1-P1 ID=BraAnng002240.3.5C.1-P1|Name=BraAnng002240.3.5C.1|organism=Brassica rapa chifu|type=polypeptide|length=269bp
MGCLVSPHRTFVGVPQHTQDIRGCLCVSICFRQHPQDVCGCLSVHISARW
SLDSARWPFPWTVWVIFGPRGLLFSTHRTSVGVRQQHTGHPWLFVDIRQH
KHDVYGCRVCSCVSVCVRQHTQDIRGCSWLSVQHTQDVLWLSVCVRVYRQ
HTQDVRGCPRQHNMTFVGVRQHHTGRSSCVRQHTPDVRGRSVCVRQHTKE
SVAVHQYTYQPVGPWTQHADPSRGLFGCLAPWAVCSVHTGRPWVVRQHTQ
DVHVCQLAHTGRPWLSVCV
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