BraAnng002240.3.5C.1-P1 (polypeptide) Brassica rapa chifu
Overview
Homology
BLAST of BraAnng002240.3.5C.1 vs. GenBank_protein
Match: KAG5397404.1 (hypothetical protein IGI04_019218 [Brassica rapa subsp. trilocularis]) HSP 1 Score: 173 bits (438), Expect = 7.740e-45 Identity = 148/360 (41.11%), Postives = 162/360 (45.00%), Query Frame = 0 Query: 1 MGCLVSPHRTFVGVPQHTQDIRGCL-------------CVSICFRXXXXXXXXXXXXHISARWSLDSARWPFPWTVWVIFGPRGLLFSTHRTSVGVRQQ----------HTGHPWLFVDIR---------------------------------------------QHKHDVYGC----RVCSCVSVCVXXXXXXXXXXSWLSVQH--TQDVLWLS-VCVRVYXXXXXXXXXXPRQHNMTFVGVRQHHTGRSSCVRQHTPD-----VRGXXXXXXXXXKESVAVHQYTYQPVGPWTQHADPSRGLFGCLAP-WAVCSVHTGRPWV----------VRQHTQDVHVCQLAXXXXXXLSVCV 269 +GCL S HRT VGV QHTQD+ GCL CVS+C RXXXXXXXXXXX HISARWSLDSARWPFPWTV VI G FSTHR V VR HTGHPWL V + Q+ DV GC R CVSV WLS+ ++ VL LS + + V Q+ G HTGR Q VR + SVAVHQYTYQ VGPWTQHA PSRGLFG P WA+CS HTGR WV VRQHTQDV C LS+CV Sbjct: 70 VGCLFSTHRTSVGVRQHTQDVCGCLNTXXXXXAVRVCPCVSVC-RXXXXXXXXXXXVHISARWSLDSARWPFPWTVRVILAHVGCQFSTHRMPVVVRNHTQDVRGCPSAHTGHPWLSVCVSVXXXXXXXXXXXXXSTHISTLVLGLSTLALPVDSSGDFGPRGLSVQYTQDVCGCPSAHRGRLCVSVSTHRTSVVVRVCLWLSISTHISKLVLGLSTLTLPVDCLGDFGPRGLSVQYTQDISGCPPAHTGRLCVSPQQDVHGCQCGVRVCPCVSVSTHRTSVAVHQYTYQHVGPWTQHAGPSRGLFGRFWPTWAICSEHTGRLWVSVSTQRTFVCVRQHTQDVRGCP-------WLSMCV 421
BLAST of BraAnng002240.3.5C.1 vs. GenBank_protein
Match: KAG5393539.1 (hypothetical protein IGI04_023502 [Brassica rapa subsp. trilocularis]) HSP 1 Score: 161 bits (408), Expect = 8.070e-41 Identity = 134/313 (42.81%), Postives = 138/313 (44.09%), Query Frame = 0 Query: 4 LVSPHRTFVGVPQHTQDIRGCLCVSICFRXXXXXXXXXXXXHISARWSLDSARWPFPWTVWVIFGPRGLLFSTHRTSVGVRQQHTGHPWLFVDIRQHKHDVYGC--------------RVCSCVSVCVXXXXXXXXXXSWLSVQ----HTQDVLWLSV--------------------------------CVRVYXXXXXXXXXXPRQHNMTFVGVRQHHTGRSSCVRQHTPDVRGXXXXXXXXXKESVAVHQYTYQPVGPWTQHADPSRGLFGCLAP-WAVCSVHTGRPWV----------VRQHTQDVHVC 255 VS HRT V V R C CV IC R HISARWSLDSAR PFPWTVWVI G LFSTHRTSVGVRQ H DVYGC RVCSCVS+ XXXXXXXXXX HT WL V VRV R T VG+RQH C HT G + SVAVHQYTYQ GPWTQHA PS GLFG P WAVCSVHTG WV VRQHTQD+ C Sbjct: 626 FVSTHRTSVAV-------RVCPCVYICVRQHTHDFRGCRSVHISARWSLDSARLPFPWTVWVILAHLGCLFSTHRTSVGVRQ--------------HTQDVYGCPLVSVSXXXXXXXVRVCSCVSISXXXXXXXXXXXXXXXXXXXPAHTGRP-WLCVFXXXXXXXXXXXXXXXILARWSLDSTHWPFPWTVRVILAHVACLFSTHR----TSVGIRQHTQDVRGCPSAHT----GRPWVSVSTYRMSVAVHQYTYQHAGPWTQHAGPSCGLFGLFWPTWAVCSVHTGCMWVSVSTHKTYVSVRQHTQDIRGC 908
BLAST of BraAnng002240.3.5C.1 vs. GenBank_protein
Match: KAG5373800.1 (hypothetical protein IGI04_042887 [Brassica rapa subsp. trilocularis]) HSP 1 Score: 147 bits (372), Expect = 4.450e-36 Identity = 112/280 (40.00%), Postives = 123/280 (43.93%), Query Frame = 0 Query: 17 HTQDIRGC--------------LCVSICFRXXXXXXXXXXXXHISARWSLDSARWPFPWTVWVIFGPRGLLFSTHRTSVGVRQQHTGHPWLFVDIRQHKHDVYGCRVCSCVSVCVXXXXXXXXXXSWLSVQH--TQDVLWLS--------VCVRVYXXXXXXXXXXPRQHNMTFVGVRQHHTGRSSCVRQHTPDVRGXXXXXXXXXKESVAVHQYTYQPVGPWTQHADPSRGLFGCLAPWAVCSVHTGRPWV-VRQHTQDV--HVCQLAXXXXXXLSVCV 269 +TQD+RGC S+C R ISA WSLDSARWPFPWTVWVI G LFST RTSVGVRQ H H+V GC CVSVCV WLS+ T VL LS + V Q+ G HTGRS CV T + SVAVHQYTYQ V PWTQHA P ++ LA WAVCSV TGRP V H+ V H C LA L V V Sbjct: 481 YTQDVRGCPQAHTGRPWVXXXXXXXSVCVRQHTQVVRGCPSVDISACWSLDSARWPFPWTVWVILAHVGCLFSTQRTSVGVRQ--------------HTHEVCGCL---CVSVCVRLCPSAHTGCPWLSISTHITTLVLGLSKXXXXXXXXALPVECLGDFGPRGLSVQYTQDIRGCPSAHTGRS-CVLVSTHRASVAVRVCPSAHRTSVAVHQYTYQHVVPWTQHAGPFGTVWVILATWAVCSVLTGRPLVSASTHSTSVAVHGCPLAHIGRPWLFVWV 742
BLAST of BraAnng002240.3.5C.1 vs. GenBank_protein
Match: KAG5384685.1 (hypothetical protein IGI04_036155 [Brassica rapa subsp. trilocularis]) HSP 1 Score: 139 bits (350), Expect = 4.200e-33 Identity = 126/360 (35.00%), Postives = 143/360 (39.72%), Query Frame = 0 Query: 1 MGCLVSPHRTFVGVPQHTQDIRGC--------LCVSICFRXXXXXXXXXXXXHI-----------------------------------------SARWSLDSARWPFPWTVWVIFGPRGLLFSTHRTSVGVRQQHTGHPW--LFVDIRQHKHDVYGCRVCSCV-------------SVCVXXXXXXXXXXSWLSVQHTQDV----------LWLSVCVRVYXXXXXXXXXX----------PR----QHNMTFVGVRQHHTGRS-SCVRQHTP--DVRGXXXXXXXXXKESVAVHQYTYQPVGPWTQHADPSRGLFGCLAPWAVCSVHTGRPWVVRQHTQDVHVCQLAXXXXXXLSVCV 269 +GCL HRT VG QHT DIRGC L +S+C R XX SARWSLDSARWPFPWTVWVIF G LFST RTSVGVRQ HT + L++ + +H+ V RVC CV +V + LSVQ+ QDV L +SV + PR Q+ G HTG V +H VR K SVA+HQY YQ GPWTQH PSRGLFG VRQHTQDV VC A LSVCV Sbjct: 400 VGCLFRTHRTSVGARQHTHDIRGCPWLAHTGRLWLSVCIRVCPCVSVSTDXXXXXXXXXXXXXXXXPSAHTGYLWXXXXVCQXXXXXXXXXXXXXSARWSLDSARWPFPWTVWVIFAHVGCLFSTPRTSVGVRQ-HTQNVCGCLWLSVSKHRTSV-AVRVCPCVXXXXXXXXXAVHHAVALPVDCSGNFGPRGLSVQYPQDVHVCLSAHTGRLCVSVSTHISTLVVGLSMLTLPVDCLGDFGPRGLSVQYTQDVCGCPPAHTGSPWLSVSKHRTFVAVRVCPCVSVSTHKTSVALHQYIYQHAGPWTQHGGPSRGLFGTSVG-------------VRQHTQDVRVCPSAHTGRSWLSVCV 744
BLAST of BraAnng002240.3.5C.1 vs. GenBank_protein
Match: KAG5373969.1 (hypothetical protein IGI04_042716 [Brassica rapa subsp. trilocularis]) HSP 1 Score: 139 bits (349), Expect = 5.840e-33 Identity = 153/396 (38.64%), Postives = 165/396 (41.67%), Query Frame = 0 Query: 1 MGCLVSPHRTFVGVPQHTQDIRGCL-----------------CVSICFRXXXXXXXXXXXXHISARWSLDSARWPFPWTVWVIFGPRGLLFSTHRTSVGVRQQ----------HTGHPWLFVDIRQHKHD----------------VYGCRVCSCVSVCVXXXXXXXXXXSW--------------------------LSVQHTQDVLW-------------------LSVCV-RVYXXXXXXXXXXPRQHNMTFVGVRQHHTGRSSCV-----------------------------------------RQHTPDVRGXXXXXXXXXKESVAVHQYTYQPVGPWTQHADPSRGLFGCLAP-WAVCSVHTGRPWV----------VRQHTQDVHVC 255 MGCL S HR+ VGV QHTQ +RGCL CV +C XXXXXXXXX HISARWSLDSARWPF WTVWVI G L STHRTSVGVRQ H G PWL V + V G + C XXXXXXXXXX L VQ+TQD+ ++VCV XXXXXXXXXX Q+ VG H S + T DVR + SV VHQYTYQ V PWTQHA PS GLFG P WAVCSVH GR WV VRQHTQD C Sbjct: 1805 MGCLFSTHRSSVGVRQHTQVVRGCLWLSVSTHRTSVAVRLCSCVFVCVXXXXXXXXXXTSVHISARWSLDSARWPFLWTVWVILAHVGCLLSTHRTSVGVRQHTQDIRVCPSAHRGRPWLSVCVXXXXXXXXXXXXXXXSTHISMLVLGLSTLTLPVDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFGPRGLYVQYTQDICGCPSAHTGRTCVSVSTHRTPVAVCVCPXXXXXXXXXXXXVHQYTYQHVGPWTQHADPSRGLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTQDVRVCPCVSVSSHRTSVVVHQYTYQQVCPWTQHAGPSPGLFGLFWPTWAVCSVHIGRLWVSISKHRTSVCVRQHTQDGRPC 2200
BLAST of BraAnng002240.3.5C.1 vs. GenBank_protein
Match: KAG5384944.1 (hypothetical protein IGI04_036414 [Brassica rapa subsp. trilocularis]) HSP 1 Score: 138 bits (347), Expect = 9.890e-33 Identity = 116/302 (38.41%), Postives = 128/302 (42.38%), Query Frame = 0 Query: 14 VPQHTQDIRGCLCVSICFRXXXXXXXXXXXXHISARWSLDSARWPFPWTVWVIFGPRGLLFSTHRTSVGVRQQ----------HTGHPWLFVDI---RQHKHDVYGCRVCSCVSVCVXXXXXXXXXXSW--------LSVQHTQDV----------LWLSVCVRVYXXXXXXXXXXPRQHNMTFVGVRQHHTGR-------------------SSCVRQHTPD------------VRGXXXXXXXXXKESVAVHQYTYQPVGPWTQHADPSRGLF--------GCLAPWAV-CSVHTGRPWV 244 V QHTQD+RGC V HISARWSLDSARWPFPWTVWVI G LFSTHRTSVGVRQ HTG PWL V + + + +S V LSVQ+T DV LW VCVRV RQ T V V H+T + S VRQ T VR + SVAVHQYTYQ VGPWTQHADPSRGLF GC + + S HTGR W+ Sbjct: 272 VCQHTQDVRGCPSV-----------------HISARWSLDSARWPFPWTVWVILAHVGCLFSTHRTSVGVRQHTQDVRGCPSAHTGRPWLSVCVCVXXXXXXXXXXXXISTHISTLVLGLSTLTRPVDCSGDFGPRGLSVQYTHDVCGCPPAHTGRLWPFVCVRV-----CLSVSISRQR--TSVAVH-HYTDQHXXXXXXXXXXXXXXXXXLSVAVRQQTXXXXXXLTNTTSVAVRLCPCVSVSTHRTSVAVHQYTYQHVGPWTQHADPSRGLFVQYTQDVRGCPSAYTGRLSAHTGRLWL 548
BLAST of BraAnng002240.3.5C.1 vs. GenBank_protein
Match: KAG5373877.1 (hypothetical protein IGI04_042803 [Brassica rapa subsp. trilocularis]) HSP 1 Score: 136 bits (342), Expect = 4.240e-32 Identity = 125/278 (44.96%), Postives = 135/278 (48.56%), Query Frame = 0 Query: 1 MGCLVSPHRTFVGVPQHTQDIRGCLCVSICFRXXXXXXXXXXXXHISARWSLDSARWPFPWTVWVIFGPRGLLFSTHRTSVGVRQQHTGHPWLFVDIRQHKHDVYGCRVCSCVSVC-----VXXXXXXXXXXSWLSVQHTQDVLWLSVCVRVYXXXXXXXXXXPRQHNMTFVGVRQHHTGRSSCVRQHTPDVRGXXXXXXXXXKESV----AVHQYTYQPVGPWTQHADPSRGLFGCLAPWAVCSVHTGRPWVVRQHTQDVHVCQLAXXXXXXLSVCV 269 +GCL S RT VGV QHTQD+RGC CVS+ XXXXXXXXXXX HISAR SLDSA WPFPWT+WVI G LFSTHRTSVGVRQ HT H +FV RQH + V R C CVSV V XXXXX XX Y Q+ G HTGRS XX VHQYTYQ WTQHA SRGLF V QH+QD+H C +SVCV Sbjct: 558 VGCLFSTQRTSVGVRQHTQDVRGCSCVSVFXXXXXXXXXXXXXVHISARCSLDSAHWPFPWTLWVILVHVGCLFSTHRTSVGVRQ-HT-HDVVFV--RQHINAV---RSCPCVSVSTHRTSVCXXXXXQVXXXXXXXXXXXXXXXXXXXXXTYQHGDFGPCGLSVQYAQDVRGCPSAHTGRSXXXXXXXXXXXXVRVCPVCXXXXXXXXXXTVHQYTYQHASRWTQHAGHSRGLFRTSV-------------AVHQHSQDIHGCPC-------VSVCV 808
BLAST of BraAnng002240.3.5C.1 vs. GenBank_protein
Match: KAG5384476.1 (hypothetical protein IGI04_035946 [Brassica rapa subsp. trilocularis]) HSP 1 Score: 135 bits (339), Expect = 1.260e-31 Identity = 126/278 (45.32%), Postives = 128/278 (46.04%), Query Frame = 0 Query: 3 CLVSPHRTFVGVPQHTQD-IRGCLCVSICFRXXXXXXXXXXXXHISARWSLDSARWPFPWTVWVIFGPRGLLFSTHRTSVGVRQQHTGHPWLFVDIRQHKHDVYGCRVCSCVSVCVXXXXXXXXXXSWLSVQHTQDVLWLSVCVRVYXXXXXXXXXXPRQHNMTFVGVRQHHTGRSSCVRQHTPDVRGXXXXXXXXXKESVAVHQYTYQPVGPWTQHADPSRGLFGCLA-PWAV--------CSVHTGRPWV-VRQHTQDVHVCQLAXXXXXXLSVCV 269 CL S H T VGV QHTQD +RGC V HISARWS DSARWPFPWTVWVI G LFSTHRTSVGVRQ H DV GC HT WLS CV V XXXXXXXXXX XXXXXXXXX VHQYTYQ VGPWTQHADPS GLFG L PW C T R V V QHTQ+V C A LSVCV Sbjct: 1721 CLFSTHGTSVGVRQHTQDDVRGCPSV-----------------HISARWSFDSARWPFPWTVWVILAHVGYLFSTHRTSVGVRQ--------------HTEDVSGC-----------------------PSAHTGRQ-WLSWCVYVXXXXXXXXXXXXXXXXXXXXXXXX------------------XXXXXXXXXXXXXXVHQYTYQHVGPWTQHADPSLGLFGTLTFPWTARVILAHVGCLFSTHRTSVGVSQHTQNVCGCPSAHTGRQWLSVCV 1925
BLAST of BraAnng002240.3.5C.1 vs. GenBank_protein
Match: KAG5384913.1 (hypothetical protein IGI04_036383 [Brassica rapa subsp. trilocularis]) HSP 1 Score: 132 bits (333), Expect = 3.090e-31 Identity = 117/251 (46.61%), Postives = 130/251 (51.79%), Query Frame = 0 Query: 1 MGCLVSPHRTFVGVPQHTQDIRGCLCVSICFRXXXXXXXXXXXXHISARWSLDSARWPFPWTVWVIFGPRGLLFSTHRTSVGVRQQHTGHPWLFVDIRQHKHDVYGCRVCSCVSV-----------------CVXXXXXXXXXXSWLSVQHTQDVLWLSVCVRVYXXXXXXXXXXPR----QHNMTFVGVRQHHTGR---SSCVRQHTPDVRGXXXXXXXXXKESVAVHQYTYQPVGPWTQHADPSRGLFG 227 +GCL S HRT VGV QHTQ + GC CV +C XXXXXXXXXXXX ISAR SL SARWPFPWTVWVIFGPRGL SV Q G PWL V H+ V RVC CVS+ XXXX WLS+ L L + + + PR Q+ G HTG S + + VR XXXXX VHQYTY VGPWTQHA+PSRGLFG Sbjct: 348 VGCLFSTHRTSVGVRQHTQVVCGCPCVFVCXXXXXXXXXXXXXXXISARGSLASARWPFPWTVWVIFGPRGL-------SVQYTQDVCGCPWLSVST--HRMSV-AVRVCPCVSINTPGRXXXXXXXXXXXXXXXXXXSAHTGRMWLSISKHISTLVLGLSM-LALPVGCLGDFGPRGLSVQYTQEVCGCLSTHTGHPWVSVSTHRTSVAVRVCLCVXXXXXXXXXXVHQYTYHHVGPWTQHANPSRGLFG 587
BLAST of BraAnng002240.3.5C.1 vs. GenBank_protein
Match: KAG5384569.1 (hypothetical protein IGI04_036039 [Brassica rapa subsp. trilocularis]) HSP 1 Score: 131 bits (330), Expect = 1.630e-30 Identity = 126/247 (51.01%), Postives = 132/247 (53.44%), Query Frame = 0 Query: 16 QHTQDIRGCLCVSICFRXXXXXXXXXXXXHISARWSLDSARWPFPWTVWVIFGPRGLLFSTHRTSVGVRQQHTGHPWLFVDIRQHKHDVYGCRVCSC----VSVCVXXXXXXXXXXSWLSV----------QHTQDVLWLSVCVRVYXXXXXXXXXX--------------PR----QHNMTFVGVRQHHTGR---SSCVRQHTPDVRGXXXXXXXXXKESVAVHQYTYQPVGPWTQHADPSRGLFG 227 Q+TQD+RGC CVS+C R XXXXXXXXXXX SARWSLDSAR PFPWTVWVI G LFSTHRTSVGVRQ H DV GC S SVCV X W+SV QHTQDV + CV V XXXXXXXXXX PR Q HTGR S CVR P V + SVAV QYTYQ VGPWTQHA PSRGLFG Sbjct: 657 QYTQDVRGCPCVSVCVRQXXXXXXXXXXXXXSARWSLDSARRPFPWTVWVILSHVGCLFSTHRTSVGVRQ--------------HTQDVCGCFWLSVSTHGTSVCVRX---------WVSVXXXXXXXXXXQHTQDVRGCA-CVSVXXXXXXXXXXXXXXXXXXXXSGNFGPRGLSVQXXXXXXXXXXXHTGRPWLSVCVRL-CPYVS------VSTHRTSVAVPQYTYQHVGPWTQHAGPSRGLFG 872 The following BLAST results are available for this feature:
BLAST of BraAnng002240.3.5C.1 vs. GenBank_protein
Analysis Date: 2022-02-26 (Diamond on OGS3.5 vs NR) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >BraAnng002240.3.5C.1-P1 ID=BraAnng002240.3.5C.1-P1|Name=BraAnng002240.3.5C.1|organism=Brassica rapa chifu|type=polypeptide|length=269bpback to top |