BraAnng002060.3.5C.1-P1 (polypeptide) Brassica rapa chifu

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBraAnng002060.3.5C.1
Unique NameBraAnng002060.3.5C.1-P1
Typepolypeptide
OrganismBrassica rapa chifu (field mustard)
Sequence length345
Homology
BLAST of BraAnng002060.3.5C.1 vs. GenBank_protein
Match: XP_022553391.1 (uncharacterized protein LOC106378064 [Brassica napus])

HSP 1 Score: 476 bits (1226), Expect = 2.630e-154
Identity = 281/458 (61.35%), Postives = 289/458 (63.10%), Query Frame = 0
Query:    1 MMTPSRYGKRNSENLRVYSNLEVTDDFAIAQGNNHCYEHEHESTGRNPTDLHMGYEQEERYEDLRERNQAPDMYGSRRNYATTHNPRQNESEFMHRERTPEPRCRQEQRTAGSSDPLIVLVQGLPDRLDHRTGESSERSPASPPDYLKM-------------------------------------------------------------------------------------------------------------------LRKYSPYGARNEGALIQRFIRGLRADLASRLQVVMFHSLYELAEIAVNVEEGMEKEQAMMKHAEPSRRTEGLGVRRMNNKGQFNRGRGRGRRNDRRFMNGPDVCYTCGGTGHFSSSCPYSQGRKAPDYITXXXXXXXXXXXXXXXXKRQVTLPAPPTRLAIEPAPKRQAVGKQVNALELGKLEPQQPHQGLITG 343
            MMTP RYG+RNSEN RVYSNLEVTDD  IA+ NNHCYEHEHESTGRNPTD HMGYEQEERY+DLRERNQAPDMYGSR+NYATTHNPR+NESEFMHRERT EPRCRQEQRTAGSSDPLIVLVQGL DRLDHRTGESSER P+SPP+YLKM                                                                                                                   L KYSPYGARNEGALI+RFIRGLRADLASRLQVV FHSLYELAEIAVNVEEGMEKEQAMMKH EPSRRTEGLGVRRMNNKGQFNRGR RGRRNDRR                    CPYSQGRKAPDYIT                KRQVTLPAPPTRL IEPAPK QAVGKQVNALELGK EPQQPHQG  TG
Sbjct:   89 MMTPPRYGQRNSENGRVYSNLEVTDDSVIAKENNHCYEHEHESTGRNPTDSHMGYEQEERYDDLRERNQAPDMYGSRQNYATTHNPRRNESEFMHRERTLEPRCRQEQRTAGSSDPLIVLVQGLLDRLDHRTGESSERRPSSPPNYLKMVTLMKKFGIVRYPGGTDPFEASTWLRNLEKNFRAIHCPDNFKKDVAIYYLTKDASDWWDNVEEYYMGREIDWEDFKTEFERKYFPPEAKDRLEIQFLELTQGNRKVREYEAEFTKLSKYSPYGARNEGALIRRFIRGLRADLASRLQVVKFHSLYELAEIAVNVEEGMEKEQAMMKHVEPSRRTEGLGVRRMNNKGQFNRGRSRGRRNDRR--------------------CPYSQGRKAPDYITCLSCGEKGHYANICPHKRQVTLPAPPTRLPIEPAPKCQAVGKQVNALELGKPEPQQPHQGPTTG 526          
BLAST of BraAnng002060.3.5C.1 vs. GenBank_protein
Match: XP_013674246.1 (uncharacterized protein LOC106378698 [Brassica napus])

HSP 1 Score: 413 bits (1061), Expect = 4.960e-138
Identity = 251/359 (69.92%), Postives = 257/359 (71.59%), Query Frame = 0
Query:   73 MYGSRRNYATTHNPRQNESEFMHRERTPEPRCRQEQRTAGSSDPLIVLVQGLPDRLDHRTGESSERSPASPPDYLKM-----------------------------------------------------------------------------------------LRKYSPYGARNEGALIQRFIRGLRADLASRLQVVMFHSLYELAEIAVNVEEGMEKEQAMMKHAEPSRRTEGLGVRRMNNKGQFNRGRGRGRRNDRRFMNGPDVCYTCGGTGHFSSSCPYSQGRKAPDYITXXXXXXXXXXXXXXXXKRQVTLPAPPTRLAIEPAPKRQAVGKQVNALELGKLEPQQPHQGLIT 342
            MYGSRRNYAT HNPR+NESEF HRERTPEP  RQEQRT GSSDPLIVLVQGL DRLDHRTGESSER P+SPPDYLKM                                                                                         LRKYSPYGARNEGALI+RFIRGLRADLASRLQVV FHSLYELAEIAVNVEEGMEKEQAMMKHAEPSRRTEGLGVRRMNNKGQFNRGRGRGRRNDRRF NGPD+CYTCGGTGHFSS+CPYSQ RKAPDYITXXXXXXXXXXXXXXXXKRQVTLPAPPTRLAIEP PKRQAVGKQVNA+ELGK EPQQPHQG IT
Sbjct:    1 MYGSRRNYATAHNPRRNESEFRHRERTPEPCYRQEQRTVGSSDPLIVLVQGLLDRLDHRTGESSERRPSSPPDYLKMVTLMKKFGTVRYPGGTYPFEASAWLRNLEKNFRAIHCPDNFKKDVAIYYLTKDASDWWDNTEEYYMRREIDWEDLKKEFEREYEAEFTKLRKYSPYGARNEGALIRRFIRGLRADLASRLQVVKFHSLYELAEIAVNVEEGMEKEQAMMKHAEPSRRTEGLGVRRMNNKGQFNRGRGRGRRNDRRFTNGPDLCYTCGGTGHFSSNCPYSQRRKAPDYITXXXXXXXXXXXXXXXXKRQVTLPAPPTRLAIEPGPKRQAVGKQVNAIELGKPEPQQPHQGPIT 359          
BLAST of BraAnng002060.3.5C.1 vs. GenBank_protein
Match: XP_022574332.1 (uncharacterized protein LOC111215226 [Brassica napus])

HSP 1 Score: 411 bits (1057), Expect = 8.100e-134
Identity = 250/427 (58.55%), Postives = 264/427 (61.83%), Query Frame = 0
Query:    2 MTPSRYGKRNSENLRVYSNLEVTDDFAIAQGNNHCYEHEHESTGRNPTDLHMGYEQEERYEDLRERNQAPDMYGSRRNYATTHNPRQNESEFMHRERTPEPRCRQEQRTAGSSDPLIVLVQGLPDRLDHRTGESSERSPASPPDYLKML-------------------------------------------------------------------------------RKYSPYGARNEGALIQRFIRGLRADLASRLQVVMFHSLYELA-------EIAVNVEEGMEKEQAMMKHAEPSRRTEGLGVRRMNNKGQFNRGRGRGRRNDRRFMNGPDVCYTCGGTGHFSSSCPYSQGRKAPDYITXXXXXXXXXXXXXXXXKRQVTLPAPPTRLAIEPAPKRQAVGKQVNALELGKLEPQQPHQGLIT 342
            MTP RYG+RNSEN RVYSNLEVTDD AIAQ NNHCYEHEHESTGRNPTD HMGYEQEERYEDLRERNQAPDMYGSRRNYAT HNP +NESEFMHRERTPEP CRQEQRTAGSSDPLIVLVQGL DRLDHRTGESSER P+SP +YLKM+                                                                               RKY P  A++   L  +F+   + +   R     F  L + +       EIAVNVEEGMEKEQAMMKHAEPSRRTEGLGVRRMNNKGQFNR RGRGR+NDRR                    CPYSQGRKAPDYIT                 RQVTLP PPTRLAIEPAPKRQ VGKQVNALELGK EPQQPHQG IT
Sbjct:    1 MTPPRYGQRNSENRRVYSNLEVTDDSAIAQRNNHCYEHEHESTGRNPTDSHMGYEQEERYEDLRERNQAPDMYGSRRNYATAHNPSRNESEFMHRERTPEPHCRQEQRTAGSSDPLIVLVQGLLDRLDHRTGESSERRPSSPSEYLKMVTLMKKFGTVRYPGGTDPFEASTWLRNLEKHFRAIHCPDNFKKDVPTYYLTKDASDWWDNVEEYYMGREIDWEYFKTEFERKYFPPEAKDR--LDIQFLELTKGNRKVREYEAEFTKLRKYSPYGARNEEIAVNVEEGMEKEQAMMKHAEPSRRTEGLGVRRMNNKGQFNRVRGRGRKNDRR--------------------CPYSQGRKAPDYITCFSCGEKGHYANSCPHNRQVTLPTPPTRLAIEPAPKRQEVGKQVNALELGKPEPQQPHQGPIT 405          
BLAST of BraAnng002060.3.5C.1 vs. GenBank_protein
Match: KAG5388485.1 (hypothetical protein IGI04_030026 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 356 bits (913), Expect = 1.110e-116
Identity = 209/344 (60.76%), Postives = 228/344 (66.28%), Query Frame = 0
Query:    1 MMTPSRYGKRNSENLRVYSNLEVTDDFAIAQGNNHCYEHEHESTGRNPTDLHMGYEQEERYEDLRERNQAPDMYGSRRNYATTHNPRQNESEFMHRERTPEPRCRQEQRTAGSSDPLIVLVQGLPDRLDHRTGESSERSPASPPDYLKMLRKYSPYGARNEGALIQRFIRGLRADLASRLQVVMFHSLYELAEIAVNVEEGMEKEQAMMK-HAEPSRRTEGLGVRRMNNKGQFNRGRGRGRRNDRRFMNGPDVCYTCGGTGHFSSSCPYSQGRKAPDYITXXXXXXXXXXXXXXXXKRQVTLPAPPTRLAIEPAPKRQAVGKQVNALELGKLEPQQPHQGLITG 343
            MMTP RYG+RNSEN RVYSNLEVTDD AIAQGNNHCYEHEHEST RNPTD H+GYEQEERYEDLRERNQAPDMYGSRRNYA THNPR+NESEFMHRERTPE RCRQEQRTAGSSDPLIVLVQGL DRLDHRTGESSER P+SPPDYLKM+     +G         R+  G     AS        +L E    A++  +  +K+  +++  AE    T+GL                                         +  CPYSQGRKAPDYIT                KRQVTLPAPPTRLAIEPAPKRQAVGKQVNALELGK EPQQPH+G ITG
Sbjct:   81 MMTPPRYGQRNSENRRVYSNLEVTDDSAIAQGNNHCYEHEHESTRRNPTDSHIGYEQEERYEDLRERNQAPDMYGSRRNYAITHNPRRNESEFMHRERTPESRCRQEQRTAGSSDPLIVLVQGLLDRLDHRTGESSERRPSSPPDYLKMVTLMKKFGT-------VRYPGGTNPFEAS----TWLRNLEENFR-AIHCPDNFKKDDNLIEGEAEEEGMTDGL---------------------------------------RMAQICPYSQGRKAPDYITCFSCGEKGHYANSCPHKRQVTLPAPPTRLAIEPAPKRQAVGKQVNALELGKHEPQQPHRGPITG 373          
BLAST of BraAnng002060.3.5C.1 vs. GenBank_protein
Match: KAG5397541.1 (hypothetical protein IGI04_019355 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 339 bits (870), Expect = 5.100e-111
Identity = 197/343 (57.43%), Postives = 206/343 (60.06%), Query Frame = 0
Query:    1 MMTPSRYGKRNSENLRVYSNLEVTDDFAIAQGNNHCYEHEHESTGRNPTDLHMGYEQEERYEDLRERNQAPDMYGSRRNYATTHNPRQNESEFMHRERTPEPRCRQEQRTAGSSDPLIVLVQGLPDRLDHRTGESSERSPASPPDYLKMLRKYSPYGARNEGALIQRFIRGLRADLASRLQVVMFHSLYELAEIAVNVEEGMEKEQAMMKHAEPSRRTEGLGVRRMNNKGQFNRGRGRGRRNDRRFMNGPDVCYTCGGTGHFSSSCPYSQGRKAPDYITXXXXXXXXXXXXXXXXKRQVTLPAPPTRLAIEPAPKRQAVGKQVNALELGKLEPQQPHQGLITG 343
            MMTP RYG+RNSEN RVYSNLEVTDD AIAQGNNHCYEHEHESTGRNPTD HMGYEQEERYEDLRERNQAPDMYGSRRN+ATTHNPRQNESEFMHRERTPEPRCRQEQRTAGSSDPLIVLVQGL DRLDHRTGESSER P+SPPDYLKM RK   Y                                                                                                C++CG  GH+++SCP+                           KRQVTLPAPPTRLAIEPAPKRQAVGKQVNALELGK EPQQPHQG ITG
Sbjct:   81 MMTPPRYGQRNSENRRVYSNLEVTDDSAIAQGNNHCYEHEHESTGRNPTDSHMGYEQEERYEDLRERNQAPDMYGSRRNFATTHNPRQNESEFMHRERTPEPRCRQEQRTAGSSDPLIVLVQGLLDRLDHRTGESSERRPSSPPDYLKMGRKAPDY----------------------------------------------------------------------------------------------ITCFSCGEKGHYANSCPH---------------------------KRQVTLPAPPTRLAIEPAPKRQAVGKQVNALELGKPEPQQPHQGPITG 302          
BLAST of BraAnng002060.3.5C.1 vs. GenBank_protein
Match: XP_033138935.1 (uncharacterized protein LOC117129803 [Brassica rapa])

HSP 1 Score: 325 bits (832), Expect = 4.220e-107
Identity = 186/194 (95.88%), Postives = 187/194 (96.39%), Query Frame = 0
Query:  150 LRKYSPYGARNEGALIQRFIRGLRADLASRLQVVMFHSLYELAEIAVNVEEGMEKEQAMMKHAEPSRRTEGLGVRRMNNKGQFNRGRGRGRRNDRRFMNGPDVCYTCGGTGHFSSSCPYSQGRKAPDYITXXXXXXXXXXXXXXXXKRQVTLPAPPTRLAIEPAPKRQAVGKQVNALELGKLEPQQPHQGLITG 343
            LRKYSPYGARNEGALI+RFIRGLR D ASRLQVV FHSLYELAEIAVNVEEGMEKEQAMMKHAEPSRRTEGLGVRRMNNKGQFNRGRGRGRRNDRRF NGPDVCYTCGGTGHFSSSCPYSQGRKAPDYITXXXXXXXXXXXXXXXXKRQVTLPAPPTRLAIEPAPKRQAVGKQVNALEL K EPQQPHQG ITG
Sbjct:   51 LRKYSPYGARNEGALIRRFIRGLRVDFASRLQVVKFHSLYELAEIAVNVEEGMEKEQAMMKHAEPSRRTEGLGVRRMNNKGQFNRGRGRGRRNDRRFTNGPDVCYTCGGTGHFSSSCPYSQGRKAPDYITXXXXXXXXXXXXXXXXKRQVTLPAPPTRLAIEPAPKRQAVGKQVNALELEKPEPQQPHQGPITG 244          
BLAST of BraAnng002060.3.5C.1 vs. GenBank_protein
Match: KAG5397573.1 (hypothetical protein IGI04_019387 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 318 bits (816), Expect = 1.330e-104
Identity = 190/341 (55.72%), Postives = 200/341 (58.65%), Query Frame = 0
Query:    2 MTPSRYGKRNSENLRVYSNLEVTDDFAIAQGNNHCYEHEHESTGRNPTDLHMGYEQEERYEDLRERNQAPDMYGSRRNYATTHNPRQNESEFMHRERTPEPRCRQEQRTAGSSDPLIVLVQGLPDRLDHRTGESSERSPASPPDYLKMLRKYSPYGARNEGALIQRFIRGLRADLASRLQVVMFHSLYELAEIAVNVEEGMEKEQAMMKHAEPSRRTEGLGVRRMNNKGQFNRGRGRGRRNDRRFMNGPDVCYTCGGTGHFSSSCPYSQGRKAPDYITXXXXXXXXXXXXXXXXKRQVTLPAPPTRLAIEPAPKRQAVGKQVNALELGKLEPQQPHQGLIT 342
            MT  RYG+RNSEN RVYSNLEVTDD AIAQGNNHCYEH+  STGRNPTD HMGYEQEERYEDLRERNQAPDMYGSRRN+ATTHNPRQNESEFMHRERTPEPRCRQEQRTAGSSDPLIVLVQGL DRLDHRTGE SER P+SPPDYLKM RK   Y                                                                                                C++CG  GH+++SCP+                           KRQVTLPAPPTRLAIEPAPKRQAVGKQVNALELGK EPQQPHQG IT
Sbjct:    1 MTSPRYGQRNSENHRVYSNLEVTDDSAIAQGNNHCYEHK--STGRNPTDSHMGYEQEERYEDLRERNQAPDMYGSRRNFATTHNPRQNESEFMHRERTPEPRCRQEQRTAGSSDPLIVLVQGLLDRLDHRTGELSERRPSSPPDYLKMGRKAPDY----------------------------------------------------------------------------------------------ITCFSCGEKGHYANSCPH---------------------------KRQVTLPAPPTRLAIEPAPKRQAVGKQVNALELGKPEPQQPHQGPIT 218          
BLAST of BraAnng002060.3.5C.1 vs. GenBank_protein
Match: KAG5384155.1 (hypothetical protein IGI04_035625 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 312 bits (800), Expect = 2.120e-102
Identity = 191/330 (57.88%), Postives = 204/330 (61.82%), Query Frame = 0
Query:   17 VYSNLEVTDDFAIAQGNNHCYEHEHESTGRNPTDLHMGYEQEERYEDLRERNQAPDMYGSRRNYATTHNPRQNESEFMHRERTPEPRCRQEQRTAGSSDPLIVLVQGLPDRLDHRTGESSERSPASPPDYLKMLRKYSPYGARNEGALIQRFIRGLRADLASRLQVVMFHSLYELAEIAVNVEEGMEKEQAMMKHAEPSRRTEGLGVRRMNNKGQFNRGRGRGRRNDRRFMNGPD--VCYTCGGTGHFSSSCPYSQGRKAPDYITXXXXXXXXXXXXXXXXKRQVTLPAPPTRLAIEPAPKRQAVGKQVNALELGKLEPQQPHQGLITGK 344
            VYSNLEVTDD  IAQGNNHCYEHEHESTGRNPTD  MGYEQEERYEDLRERNQAPDMYGSRRNYATTHNPR+NESEFMHRERTPE RCRQEQRTAGSSDPLIVLVQGL DRLDHRTGESSER P+SPPDYLKM                                               N+ EG  +E+ M         T+GL +  M       R               PD   C++CG  GH+++SCP+                           KRQVTLPAPPTRLAIEPAPKRQAVGKQVNALELGK EPQQPHQG ITGK
Sbjct:   42 VYSNLEVTDDSVIAQGNNHCYEHEHESTGRNPTDSRMGYEQEERYEDLRERNQAPDMYGSRRNYATTHNPRRNESEFMHRERTPESRCRQEQRTAGSSDPLIVLVQGLLDRLDHRTGESSERRPSSPPDYLKMD----------------------------------------------NLIEGEAEEEGM---------TDGLRMAHMCVTLVVGR-------------KAPDYITCFSCGEKGHYANSCPH---------------------------KRQVTLPAPPTRLAIEPAPKRQAVGKQVNALELGKPEPQQPHQGPITGK 276          
BLAST of BraAnng002060.3.5C.1 vs. GenBank_protein
Match: KAG2251054.1 (hypothetical protein Bca52824_081190 [Brassica carinata])

HSP 1 Score: 310 bits (793), Expect = 7.630e-101
Identity = 182/279 (65.23%), Postives = 201/279 (72.04%), Query Frame = 0
Query:    1 MMTPSRYGKRNSENLRVYSNLEVTDDFAIAQGNNHCYEHEHESTGRNPTDLHMGYEQEERYEDLRERNQAPDMYGSRRNYATTHNPRQNESEFMHRERTPEPRCRQEQ----RTAGSSDPLIVLVQGLPDRLDHRTGESSERSPASPPDYLKMLRKYSPYGARNEGALIQRFIRGLRADLASRLQVVMFHSLYELAEIAVNVEEGMEKEQAMMKHAEPSRRTEGLGVRRMNNKGQFNRGRGRGRRNDRRFMNGPDVCYTCGGTGHFSSSCPYSQGRKAP 275
            MM P RYG+ NSE  R YSNLEVTDD AIAQGNNH YEHEHESTGRNPTD  MGYEQEE+YED RERNQ PDMYGSRRNYAT HNPR+N+SE   R    +     ++    R  G +DP              R  E + ++   P ++ K +  Y  Y  ++       FIRGLRADLASRLQVV FHSLYELAEIAVNVEEGMEKE AMMKHAEPSRRTEGL + RMNNKGQFNRGRGRGR+ND RF NGP+VCYTCGG  HFSSSC YSQGRKAP
Sbjct:   12 MMRPPRYGQCNSETRRAYSNLEVTDDSAIAQGNNHYYEHEHESTGRNPTDSQMGYEQEEQYEDFRERNQVPDMYGSRRNYATAHNPRRNDSEPSSRLDYLKMVTLMKKFGTLRYPGGTDPFEASAW-------LRNLEKNFQTIHCPDNFEKDVAIY--YLTKDASDW---FIRGLRADLASRLQVVKFHSLYELAEIAVNVEEGMEKELAMMKHAEPSRRTEGLRILRMNNKGQFNRGRGRGRKNDGRFRNGPNVCYTCGGACHFSSSCLYSQGRKAP 278          
BLAST of BraAnng002060.3.5C.1 vs. GenBank_protein
Match: XP_033138738.1 (uncharacterized protein LOC108870803 [Brassica rapa])

HSP 1 Score: 313 bits (801), Expect = 1.010e-100
Identity = 179/194 (92.27%), Postives = 184/194 (94.85%), Query Frame = 0
Query:  150 LRKYSPYGARNEGALIQRFIRGLRADLASRLQVVMFHSLYELAEIAVNVEEGMEKEQAMMKHAEPSRRTEGLGVRRMNNKGQFNRGRGRGRRNDRRFMNGPDVCYTCGGTGHFSSSCPYSQGRKAPDYITXXXXXXXXXXXXXXXXKRQVTLPAPPTRLAIEPAPKRQAVGKQVNALELGKLEPQQPHQGLITG 343
            LRKYSPYGARNEG LI+RFIRGLRADLASRLQVV FHSLYELAEIAVNV+EGMEKEQAMMKH+EPSRRTEGLG+RRMNNKGQFNRGR RGRRNDRRF NGP+VCYTCGGT HFSSSCPYSQGRKAPDYITXXXXXXXXXXXXXXXX RQVT PAPPT LAIEPAPKRQAVGKQVNALELGK EPQQPHQG ITG
Sbjct:   51 LRKYSPYGARNEGTLIRRFIRGLRADLASRLQVVKFHSLYELAEIAVNVQEGMEKEQAMMKHSEPSRRTEGLGIRRMNNKGQFNRGRSRGRRNDRRFGNGPNVCYTCGGTSHFSSSCPYSQGRKAPDYITXXXXXXXXXXXXXXXXNRQVTFPAPPTILAIEPAPKRQAVGKQVNALELGKPEPQQPHQGPITG 244          
The following BLAST results are available for this feature:
BLAST of BraAnng002060.3.5C.1 vs. GenBank_protein
Analysis Date: 2022-02-26 (Diamond on OGS3.5 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
XP_022553391.12.630e-15461.35uncharacterized protein LOC106378064 [Brassica nap... [more]
XP_013674246.14.960e-13869.92uncharacterized protein LOC106378698 [Brassica nap... [more]
XP_022574332.18.100e-13458.55uncharacterized protein LOC111215226 [Brassica nap... [more]
KAG5388485.11.110e-11660.76hypothetical protein IGI04_030026 [Brassica rapa s... [more]
KAG5397541.15.100e-11157.43hypothetical protein IGI04_019355 [Brassica rapa s... [more]
XP_033138935.14.220e-10795.88uncharacterized protein LOC117129803 [Brassica rap... [more]
KAG5397573.11.330e-10455.72hypothetical protein IGI04_019387 [Brassica rapa s... [more]
KAG5384155.12.120e-10257.88hypothetical protein IGI04_035625 [Brassica rapa s... [more]
KAG2251054.17.630e-10165.23hypothetical protein Bca52824_081190 [Brassica car... [more]
XP_033138738.11.010e-10092.27uncharacterized protein LOC108870803 [Brassica rap... [more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterProScan on OGS3.5
Date Performed: 2022-02-26
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 252..268
e-value: 0.003
score: 26.8
coord: 279..295
e-value: 0.003
score: 26.8
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 252..267
e-value: 1.2E-5
score: 25.2
coord: 278..295
e-value: 1.6E-5
score: 24.8
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 253..267
score: 9.850513
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 280..294
score: 10.42741
NoneNo IPR availableGENE3D4.10.60.10coord: 214..300
e-value: 5.3E-14
score: 53.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 208..223
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..116
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 208..241
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 89..105
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 248..297

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold0325contigScaffold0325:51223..52601 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS3.52022-02-26
Diamond on OGS3.5 vs NR2022-02-26
Blast2GO on OGS3.52022-02-26
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BraAnng002060.3.5C.1BraAnng002060.3.5C.1Brassica rapa chifumRNAScaffold0325 51223..52601 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BraAnng002060.3.5C.1-P1 ID=BraAnng002060.3.5C.1-P1|Name=BraAnng002060.3.5C.1|organism=Brassica rapa chifu|type=polypeptide|length=345bp
MMTPSRYGKRNSENLRVYSNLEVTDDFAIAQGNNHCYEHEHESTGRNPTD
LHMGYEQEERYEDLRERNQAPDMYGSRRNYATTHNPRQNESEFMHRERTP
EPRCRQEQRTAGSSDPLIVLVQGLPDRLDHRTGESSERSPASPPDYLKML
RKYSPYGARNEGALIQRFIRGLRADLASRLQVVMFHSLYELAEIAVNVEE
GMEKEQAMMKHAEPSRRTEGLGVRRMNNKGQFNRGRGRGRRNDRRFMNGP
DVCYTCGGTGHFSSSCPYSQGRKAPDYITCFSCGEKGHYANSCPHKRQVT
LPAPPTRLAIEPAPKRQAVGKQVNALELGKLEPQQPHQGLITGK.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036875Znf_CCHC_sf
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding