BraAnng001980.3.5C.1-P1 (polypeptide) Brassica rapa chifu

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	BraAnng001980.3.5C.1
Unique Name	BraAnng001980.3.5C.1-P1
Type	polypeptide
Organism	Brassica rapa chifu (field mustard)
Sequence length	341

Homology

[Close]

BLAST of BraAnng001980.3.5C.1 vs. GenBank_protein
Match: KAG2270333.1 (hypothetical protein Bca52824_064888 [Brassica carinata])

HSP 1 Score: 508 bits (1308), Expect = 1.600e-177
Identity = 267/305 (87.54%), Postives = 271/305 (88.85%), Query Frame = 0

Query:   40 YPGHHQGPEAYLCWEKDMEHWFDSNQVHEEDKTAIAEDTLTEDAFRKWEQDAYWRLAYDEPEATWQEMKELLYEEYVKGAGDELLNQIRVYTNLEPRRLILAKMPNRKAKLKNAHDLKLHQESTLIIKGATEHTTAARASGVQGVPTPQAKTRELSVNMDQEDVVSRLKQEEIIPEPDPQEGLKPATRNPLKLVDVSVQAHEE-----------------ATMICLSSPKRCDTGTSFSKGPMKQKKVILKRDDKAPPKEPSLLKHLSGKDGTTTSSILLQEEPPDQSPNRQAVPLDAPIKLLNQ 327
            + GHHQGPEAYLCWEKDMEHWFDSNQVHEEDKTAI EDTLTEDAFRKWEQDAYWRLAYDEPEATWQEMKELLYEEYVKGAGDELLNQIRVYTNLEPRRLILAK PNRKAKLKNA+DLKLHQESTLIIK  TEHTTAAR SGVQGVPTPQAKTRELS        + +LKQEEIIPEPDPQ GLKPATRNPLKLVDVSVQAHEE                 ATMICLSSPKRCDTGTSFSKGPMKQKKVILKRDDKAPPKEPSLLKHLSGKDGTTTSSILLQEEPPDQSPNRQAVPLDAPIKL NQ
Sbjct:  114 FAGHHQGPEAYLCWEKDMEHWFDSNQVHEEDKTAIVEDTLTEDAFRKWEQDAYWRLAYDEPEATWQEMKELLYEEYVKGAGDELLNQIRVYTNLEPRRLILAKRPNRKAKLKNAYDLKLHQESTLIIKVTTEHTTAARVSGVQGVPTPQAKTRELSTKP-----LPKLKQEEIIPEPDPQ-GLKPATRNPLKLVDVSVQAHEEVQNNLNKLVCSVYDSSKATMICLSSPKRCDTGTSFSKGPMKQKKVILKRDDKAPPKEPSLLKHLSGKDGTTTSSILLQEEPPDQSPNRQAVPLDAPIKLPNQ 412

[Close]

BLAST of BraAnng001980.3.5C.1 vs. GenBank_protein
Match: KAG2283604.1 (hypothetical protein Bca52824_054824 [Brassica carinata])

HSP 1 Score: 441 bits (1135), Expect = 2.270e-151
Identity = 233/298 (78.19%), Postives = 249/298 (83.56%), Query Frame = 0

Query:   40 YPGHHQGPEAYLCWEKDMEHWFDSNQVHEEDKTAIAEDTLTEDAFRKWEQDAYWRLAYDEPEATWQEMKELLYEEYVKGAGDELLNQIRVYTNLEPRRLILAKMPNRKAKLKNAHDLKLHQESTLIIKGATEHTTAARASGVQGVPTPQAKTRELSVNMDQEDVVSRLKQEEIIPEPDPQEGLKPATRNPLKLVDVSVQAHEEA-TMICLSSPKRCDTGTSFSKGPMKQKKVILKRDDKAPPKEPSLLKHLSGKDGTTTSSILLQEEPPDQSPNRQAVPLDAPIKLLNQIPLRQEARK 336
            + GHHQGPE YLCWEKDMEHWFDSNQVHEEDKTAIAEDTLTEDAFRKWEQDAYWRLAYDEPEATWQEMKELLYEEYVKGAGDELL+QIRV+TNL+PRRLILAK PN+KA+LK AHD KLHQESTLIIKG TEHTTA R SGVQG+ T                 + +LKQEEIIPEPDPQEGLKPAT   LKLVDVSVQ+HEE    I    PKR DTGTSFSKGPMKQKKV+L RDDKAPPKEPSLLK LS +DGTTTSSILLQ EPPDQSPNRQA+PLDAPIKL NQ  + Q  ++
Sbjct:  114 FTGHHQGPEEYLCWEKDMEHWFDSNQVHEEDKTAIAEDTLTEDAFRKWEQDAYWRLAYDEPEATWQEMKELLYEEYVKGAGDELLSQIRVHTNLQPRRLILAKRPNQKARLKKAHDPKLHQESTLIIKGETEHTTAERVSGVQGLSTKP---------------MPKLKQEEIIPEPDPQEGLKPATSKSLKLVDVSVQSHEEVQNNINKLVPKRYDTGTSFSKGPMKQKKVVLNRDDKAPPKEPSLLKPLSREDGTTTSSILLQVEPPDQSPNRQAMPLDAPIKLPNQPLMTQSPQR 396

[Close]

BLAST of BraAnng001980.3.5C.1 vs. GenBank_protein
Match: KAG5374397.1 (hypothetical protein IGI04_042289 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 478 bits (1231), Expect = 2.810e-150
Identity = 271/382 (70.94%), Postives = 272/382 (71.20%), Query Frame = 0

Query:   50 YLCWEKDMEHWFDSNQVHEEDKTAIAEDTLTEDAFRKWEQDAYWRLAYDEPEATWQEMKELLYEEYVKGAGDELLNQIRVYTNLEPRRLILAKMPNRKAKLKNAHDLKLHQESTLIIKGATEHTTAARASGVQGVPTPQAKTRELS--------------------------------------------------------------------------------------VNMDQEDVVSRLKQEEIIPEPDPQEGLKPATRNPLKLVDVSVQAHEE-----------------ATMICLSSPKRCDTGTSFSKGPMKQKKVILKRDDKAPPKEPSLLKHLSGKDGTTTSSILLQEEPPDQSPNRQAVPLDAPIKLLNQI 328
            Y    KDMEHWFDSNQVHEEDKTAIAEDTLTEDAFRKWEQDAYWRLAYDEPEATWQEMKELLYEEYVKGAGDELLNQIRVYTNLEPRRLILAK PNRKAKLKNAHDLKLHQESTLIIKGATEHTTAARASGVQGVPTPQAKTRELS                                                                                      VN DQEDVVSRLKQEEIIPEPDPQEGLKPATRNPLKLVDVSVQAHEE                 ATMICLSSPKRCDTGTSFSKGPMKQKKVILKRDDKAPPKEPSLLKHLSGKDGTTTSSILLQEEPPDQSPNRQAVPLDAPIKL NQ+
Sbjct:  626 YFLSLKDMEHWFDSNQVHEEDKTAIAEDTLTEDAFRKWEQDAYWRLAYDEPEATWQEMKELLYEEYVKGAGDELLNQIRVYTNLEPRRLILAKRPNRKAKLKNAHDLKLHQESTLIIKGATEHTTAARASGVQGVPTPQAKTRELSTKPLPKFHEKKKPSKSSKSSKPVEFICYRCHEKGHFAVTCPTRLVVTSNSLEVNLDSTSEVISHLACKFPTSGIMHLSCPKADYAGVNKDQEDVVSRLKQEEIIPEPDPQEGLKPATRNPLKLVDVSVQAHEEVQNNLNKLVCSVYDSSKATMICLSSPKRCDTGTSFSKGPMKQKKVILKRDDKAPPKEPSLLKHLSGKDGTTTSSILLQEEPPDQSPNRQAVPLDAPIKLPNQV 1007

[Close]

BLAST of BraAnng001980.3.5C.1 vs. GenBank_protein
Match: KAG5397254.1 (hypothetical protein IGI04_019068 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 353 bits (905), Expect = 1.260e-114
Identity = 194/284 (68.31%), Postives = 198/284 (69.72%), Query Frame = 0

Query:   40 YPGHHQGPEAYLCWEKDMEHWFDSNQVHEEDKTAIAEDTLTEDAFRKWEQDAYWRLAYDEPEATWQEMKELLYEEYVKGAGDELLNQIRVYTNLEPRRLILAKMPNRKAKLKNAHDLKLHQESTLIIKGATEHTTAARASGVQGVPTPQAKTRELSVNMDQEDVVSRLKQEEIIPEPDPQEGLKPATRNPLKLVDVSVQAHEE-----------------ATMICLSSPKRCDTGTSFSKGPMKQKKVILKRDDKAPPKEPSLLKHLSGKDGTTTSSILLQEEP 306
            + GHHQGPEAYLCWEKDMEHWFDSNQV+EEDKTAIAEDTLTEDAFRKWEQDAYWRLAYDEPEATWQEMKELLYEEYVKGAGDELLNQIRVYTNLEPRRLILAK PNRKAKLKNAHDLKL++E                                                                  NPLKLVDVSVQAHEE                 ATMICLSSPKRCDTGTSF KGPMKQKKVILKRDDKAPPKEPSLLKHLSGKDGTTTSSILLQEEP
Sbjct:  224 FAGHHQGPEAYLCWEKDMEHWFDSNQVNEEDKTAIAEDTLTEDAFRKWEQDAYWRLAYDEPEATWQEMKELLYEEYVKGAGDELLNQIRVYTNLEPRRLILAKRPNRKAKLKNAHDLKLYKE------------------------------------------------------------------NPLKLVDVSVQAHEEVQNSLNKLVCSVYDSSKATMICLSSPKRCDTGTSFRKGPMKQKKVILKRDDKAPPKEPSLLKHLSGKDGTTTSSILLQEEP 441

[Close]

BLAST of BraAnng001980.3.5C.1 vs. GenBank_protein
Match: XP_013629729.1 (PREDICTED: uncharacterized protein LOC106335694 [Brassica oleracea var. oleracea])

HSP 1 Score: 348 bits (892), Expect = 4.950e-113
Identity = 191/293 (65.19%), Postives = 196/293 (66.89%), Query Frame = 0

Query:   40 YPGHHQGPEAYLCWEKDMEHWFDSNQVHEEDKTAIAEDTLTEDAFRKWEQDAYWRLAYDEPEATWQEMKELLYEEYVKGAGDELLNQIRVYTNLEPRRLILAKMPNRKAKLKNAHDLKLHQESTLIIKGATEHTTAARASGVQGVPTPQAKTRELS--------------------------------------------------------------------------------------VNMDQEDVVSRLKQEEIIPEPDPQEGLKPATRNPLKLVDVSVQAHEEATMI 246
            + GHHQGPE YLCWE DMEHWFDSNQVHEEDKT IAED LTEDAFRKWEQDAYWRLAYDEPEATWQEMKELLYEEYVKGAGDELLNQIRVYTNLEPRRLILAK PNRKAKLKNAHDLKLHQESTLIIKGATEHTTAAR SGVQGVPTPQAKTRE+S                                                                                      +N DQEDVVSRLKQEEIIPEPDPQEGLKPATRNPLKLVD SVQAHEE+  +
Sbjct:  224 FAGHHQGPEPYLCWENDMEHWFDSNQVHEEDKTTIAEDALTEDAFRKWEQDAYWRLAYDEPEATWQEMKELLYEEYVKGAGDELLNQIRVYTNLEPRRLILAKRPNRKAKLKNAHDLKLHQESTLIIKGATEHTTAARVSGVQGVPTPQAKTREISTKPLPKFHEKKKPSKSSKSSKPVEFICYRCHEKGHFAVTCPTRLVVTSNSLEVNLDSTSEVISHLVCKFPTSGIMHLSCPKADYAGLNKDQEDVVSRLKQEEIIPEPDPQEGLKPATRNPLKLVDFSVQAHEESQKV 516

[Close]

BLAST of BraAnng001980.3.5C.1 vs. GenBank_protein
Match: KAF2610210.1 (hypothetical protein F2Q70_00008103 [Brassica cretica])

HSP 1 Score: 358 bits (920), Expect = 9.310e-111
Identity = 195/289 (67.47%), Postives = 207/289 (71.63%), Query Frame = 0

Query:   40 YPGHHQGPEAYLCWEKDMEHWFDSNQVHEEDKTAIAEDTLTEDAFRKWEQDAYWRLAYDEPEATWQEMKELLYEEYVKGAGDELLNQIRVYTNLEPRRLILAKMPNRKAKLKNAHDLKLHQESTLIIKGATEHTTAARASGVQGVPTPQAKTRELSVNMDQEDVVSRLKQEEIIPEPDPQEGLKPATRNPLKLVDVSVQAHEEATMICLSSPKRCDTGTSFSKGPMKQKKVILKRDDKAPPKEPSLLKHLSGKDGTTTSSILLQEEPPDQSPNRQAVPLDAPIKLLNQI 328
            + GHHQGPE YLCWEKDMEHWFDSNQVHEEDKTAIAEDTLTEDAFRKWEQDAYWRLAYDEPEATWQEMKELLYEEYVKG+GDELL+QIRV+ NLEPRRLILAK PN+KA+LK AHD KLHQESTLIIKG TEHTTA R                          + R K                                       + SPKR DTGTSFSKGPMKQKKV+L RDDKAPPKEPSLLK LS +DGTTTSSILLQ EPPDQSPNRQA+PLDAPIKL NQ+
Sbjct:  706 FAGHHQGPEEYLCWEKDMEHWFDSNQVHEEDKTAIAEDTLTEDAFRKWEQDAYWRLAYDEPEATWQEMKELLYEEYVKGSGDELLSQIRVHNNLEPRRLILAKRPNQKARLKKAHDPKLHQESTLIIKGETEHTTAER--------------------------MFRSKH--------------------------------------MRSPKRYDTGTSFSKGPMKQKKVVLNRDDKAPPKEPSLLKPLSREDGTTTSSILLQVEPPDQSPNRQAMPLDAPIKLPNQV 930

[Close]

BLAST of BraAnng001980.3.5C.1 vs. GenBank_protein
Match: XP_033139268.1 (uncharacterized protein DDB_G0290685-like [Brassica rapa])

HSP 1 Score: 310 bits (795), Expect = 4.840e-100
Identity = 152/156 (97.44%), Postives = 153/156 (98.08%), Query Frame = 0

Query:   40 YPGHHQGPEAYLCWEKDMEHWFDSNQVHEEDKTAIAEDTLTEDAFRKWEQDAYWRLAYDEPEATWQEMKELLYEEYVKGAGDELLNQIRVYTNLEPRRLILAKMPNRKAKLKNAHDLKLHQESTLIIKGATEHTTAARASGVQGVPTPQAKTRELS 195
            + GHHQGPEAYLCWEKDMEHWFDSNQVHEEDKTAIAEDTLTEDAFRKWEQDAYWRLAYDEPEATWQEMKELLYEEYVKGAGDELLNQIRVYTNLEPRRLILAK PNRKAKLKNAHDLKLHQESTLIIKGATEHTTAARAS VQGVPTPQAKTRELS
Sbjct:  224 FAGHHQGPEAYLCWEKDMEHWFDSNQVHEEDKTAIAEDTLTEDAFRKWEQDAYWRLAYDEPEATWQEMKELLYEEYVKGAGDELLNQIRVYTNLEPRRLILAKRPNRKAKLKNAHDLKLHQESTLIIKGATEHTTAARASAVQGVPTPQAKTRELS 379

[Close]

BLAST of BraAnng001980.3.5C.1 vs. GenBank_protein
Match: XP_033138852.1 (uncharacterized protein DDB_G0290685-like [Brassica rapa])

HSP 1 Score: 310 bits (795), Expect = 4.840e-100
Identity = 152/156 (97.44%), Postives = 153/156 (98.08%), Query Frame = 0

Query:   40 YPGHHQGPEAYLCWEKDMEHWFDSNQVHEEDKTAIAEDTLTEDAFRKWEQDAYWRLAYDEPEATWQEMKELLYEEYVKGAGDELLNQIRVYTNLEPRRLILAKMPNRKAKLKNAHDLKLHQESTLIIKGATEHTTAARASGVQGVPTPQAKTRELS 195
            + GHHQGPEAYLCWEKDMEHWFDSNQVHEEDKTAIAEDTLTEDAFRKWEQDAYWRLAYDEPEATWQEMKELLYEEYVKGAGDELLNQIRVYTNLEPRRLILAK PNRKAKLKNAHDLKLHQESTLIIKGATEHTTAARAS VQGVPTPQAKTRELS
Sbjct:  224 FAGHHQGPEAYLCWEKDMEHWFDSNQVHEEDKTAIAEDTLTEDAFRKWEQDAYWRLAYDEPEATWQEMKELLYEEYVKGAGDELLNQIRVYTNLEPRRLILAKRPNRKAKLKNAHDLKLHQESTLIIKGATEHTTAARASAVQGVPTPQAKTRELS 379

[Close]

BLAST of BraAnng001980.3.5C.1 vs. GenBank_protein
Match: XP_033139171.1 (uncharacterized protein DDB_G0290685-like [Brassica rapa])

HSP 1 Score: 310 bits (795), Expect = 4.840e-100
Identity = 152/156 (97.44%), Postives = 153/156 (98.08%), Query Frame = 0

Query:   40 YPGHHQGPEAYLCWEKDMEHWFDSNQVHEEDKTAIAEDTLTEDAFRKWEQDAYWRLAYDEPEATWQEMKELLYEEYVKGAGDELLNQIRVYTNLEPRRLILAKMPNRKAKLKNAHDLKLHQESTLIIKGATEHTTAARASGVQGVPTPQAKTRELS 195
            + GHHQGPEAYLCWEKDMEHWFDSNQVHEEDKTAIAEDTLTEDAFRKWEQDAYWRLAYDEPEATWQEMKELLYEEYVKGAGDELLNQIRVYTNLEPRRLILAK PNRKAKLKNAHDLKLHQESTLIIKGATEHTTAARAS VQGVPTPQAKTRELS
Sbjct:  224 FAGHHQGPEAYLCWEKDMEHWFDSNQVHEEDKTAIAEDTLTEDAFRKWEQDAYWRLAYDEPEATWQEMKELLYEEYVKGAGDELLNQIRVYTNLEPRRLILAKRPNRKAKLKNAHDLKLHQESTLIIKGATEHTTAARASAVQGVPTPQAKTRELS 379

[Close]

BLAST of BraAnng001980.3.5C.1 vs. GenBank_protein
Match: XP_033129056.1 (uncharacterized protein DDB_G0290685-like [Brassica rapa])

HSP 1 Score: 307 bits (786), Expect = 1.100e-98
Identity = 150/156 (96.15%), Postives = 153/156 (98.08%), Query Frame = 0

Query:   40 YPGHHQGPEAYLCWEKDMEHWFDSNQVHEEDKTAIAEDTLTEDAFRKWEQDAYWRLAYDEPEATWQEMKELLYEEYVKGAGDELLNQIRVYTNLEPRRLILAKMPNRKAKLKNAHDLKLHQESTLIIKGATEHTTAARASGVQGVPTPQAKTRELS 195
            + GHHQGPEAYLCWEKDMEHWFDSNQVHEEDKTAIAEDTLTEDAFRKWEQDAYWRLAYDEPEATWQEMKELLYEEYVKGAGDELLNQIRVYTNLEPR+LILAK PNRKAKLKNAH+LKLHQESTLIIKGATEHTTAARAS VQGVPTPQAKTRELS
Sbjct:  224 FAGHHQGPEAYLCWEKDMEHWFDSNQVHEEDKTAIAEDTLTEDAFRKWEQDAYWRLAYDEPEATWQEMKELLYEEYVKGAGDELLNQIRVYTNLEPRQLILAKRPNRKAKLKNAHNLKLHQESTLIIKGATEHTTAARASAVQGVPTPQAKTRELS 379

The following BLAST results are available for this feature:

BLAST of BraAnng001980.3.5C.1 vs. GenBank_protein

BLAST of BraAnng001980.3.5C.1 vs. GenBank_protein
Analysis Date: 2022-02-26 (Diamond on OGS3.5 vs NR)
Total hits: 20


Match Name	E-value	Identity	Description
KAG2270333.1	1.600e-177	87.54	hypothetical protein Bca52824_064888 [Brassica car...	[more]
KAG2283604.1	2.270e-151	78.19	hypothetical protein Bca52824_054824 [Brassica car...	[more]
KAG5374397.1	2.810e-150	70.94	hypothetical protein IGI04_042289 [Brassica rapa s...	[more]
KAG5397254.1	1.260e-114	68.31	hypothetical protein IGI04_019068 [Brassica rapa s...	[more]
XP_013629729.1	4.950e-113	65.19	PREDICTED: uncharacterized protein LOC106335694 [B...	[more]
KAF2610210.1	9.310e-111	67.47	hypothetical protein F2Q70_00008103 [Brassica cret...	[more]
XP_033139268.1	4.840e-100	97.44	uncharacterized protein DDB_G0290685-like [Brassic...	[more]
XP_033138852.1	4.840e-100	97.44	uncharacterized protein DDB_G0290685-like [Brassic...	[more]
XP_033139171.1	4.840e-100	97.44	uncharacterized protein DDB_G0290685-like [Brassic...	[more]
XP_033129056.1	1.100e-98	96.15	uncharacterized protein DDB_G0290685-like [Brassic...	[more]

Pages

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

InterPro

Analysis Name: InterProScan on OGS3.5
Date Performed: 2022-02-26


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 274..288
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 274..294
None	No IPR available	SIGNALP_GRAM_POSITIVE	SignalP-TM	SignalP-TM	coord: 1..10 score: 0.47

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold0278	contig	Scaffold0278:28947..30596 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS3.5	2022-02-26
Diamond on OGS3.5 vs NR	2022-02-26
Blast2GO on OGS3.5	2022-02-26

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
BraAnng001980.3.5C.1	BraAnng001980.3.5C.1	Brassica rapa chifu	mRNA	Scaffold0278 28947..30596 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>BraAnng001980.3.5C.1-P1 ID=BraAnng001980.3.5C.1-P1|Name=BraAnng001980.3.5C.1|organism=Brassica rapa chifu|type=polypeptide|length=341bp
MSMRKISLKRKKSMKMLMEEKQVSNLLKKKLETSLMLKAYPGHHQGPEAY
LCWEKDMEHWFDSNQVHEEDKTAIAEDTLTEDAFRKWEQDAYWRLAYDEP
EATWQEMKELLYEEYVKGAGDELLNQIRVYTNLEPRRLILAKMPNRKAKL
KNAHDLKLHQESTLIIKGATEHTTAARASGVQGVPTPQAKTRELSVNMDQ
EDVVSRLKQEEIIPEPDPQEGLKPATRNPLKLVDVSVQAHEEATMICLSS
PKRCDTGTSFSKGPMKQKKVILKRDDKAPPKEPSLLKHLSGKDGTTTSSI
LLQEEPPDQSPNRQAVPLDAPIKLLNQIPLRQEARKFFIY.

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0003676	nucleic acid binding

Orthology

View orthology data for BraAnng001980.3.5C.1-P1