Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
| Analysis Name | Date Performed |
|---|
| Brassica rapa chifu OGS3.5 | 2021-11-28 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BraA01g000220.3.5C | BraA01g000220.3.5C | Brassica rapa chifu | gene | A01 105936..108344 - |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BraA01g000220.3.5C.6.exon7 | BraA01g000220.3.5C.6.exon7 | Brassica rapa chifu | exon | A01 105964..106434 - |
| BraA01g000220.3.5C.6.exon6 | BraA01g000220.3.5C.6.exon6 | Brassica rapa chifu | exon | A01 106590..106721 - |
| BraA01g000220.3.5C.6.exon5 | BraA01g000220.3.5C.6.exon5 | Brassica rapa chifu | exon | A01 106799..106937 - |
| BraA01g000220.3.5C.6.exon4 | BraA01g000220.3.5C.6.exon4 | Brassica rapa chifu | exon | A01 107031..107121 - |
| BraA01g000220.3.5C.6.exon3 | BraA01g000220.3.5C.6.exon3 | Brassica rapa chifu | exon | A01 107207..107327 - |
| BraA01g000220.3.5C.6.exon2 | BraA01g000220.3.5C.6.exon2 | Brassica rapa chifu | exon | A01 107527..107689 - |
| BraA01g000220.3.5C.6.exon1 | BraA01g000220.3.5C.6.exon1 | Brassica rapa chifu | exon | A01 108022..108309 - |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BraA01g000220.3.5C.6.utr3p5 | BraA01g000220.3.5C.6.utr3p5 | Brassica rapa chifu | three_prime_UTR | A01 105964..106434 - |
| BraA01g000220.3.5C.6.utr3p4 | BraA01g000220.3.5C.6.utr3p4 | Brassica rapa chifu | three_prime_UTR | A01 106590..106721 - |
| BraA01g000220.3.5C.6.utr3p3 | BraA01g000220.3.5C.6.utr3p3 | Brassica rapa chifu | three_prime_UTR | A01 106799..106937 - |
| BraA01g000220.3.5C.6.utr3p2 | BraA01g000220.3.5C.6.utr3p2 | Brassica rapa chifu | three_prime_UTR | A01 107031..107121 - |
| BraA01g000220.3.5C.6.utr3p1 | BraA01g000220.3.5C.6.utr3p1 | Brassica rapa chifu | three_prime_UTR | A01 107207..107316 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| cds.BraA01g000220.3.5C.6 | cds.BraA01g000220.3.5C.6 | Brassica rapa chifu | CDS | A01 108022..108198 - |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| BraA01g000220.3.5C.6.utr5p1 | BraA01g000220.3.5C.6.utr5p1 | Brassica rapa chifu | five_prime_UTR | A01 108199..108309 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >BraA01g000220.3.5C.6 ID=BraA01g000220.3.5C.6|Name=BraA01g000220.3.5C.6|organism=Brassica rapa chifu|type=mRNA|length=1405bp|location=Sequence derived from alignment at A01:105964..108309- (Brassica rapa chifu)|Notes=Excludes all bases but those of type(s): exon.
AGAGATAAGGTGGTGGTGTGTGTGTGTGTCATCATTCATAAGCCACTGTG
TGTCTCTCGAACAAACCAAATTAAGGCAGAGAGAAGAGAAAGAGATAACA
TTTAACAAAAGATGGCATCAACATCACTCCTCAAGGCATCTCCTGTGTTG
GACAAATCGGAGTGGGTCAAGGGACAAAGCGTTCTCTTCCGTCAGCCATC
TTCCGCCGCCGTCGTCATACGTAACCGCGCCACCTCCCTTACCGTCCGTG
CCGCTTCTTCCTACGCCGATGAGCTTGTTAAGACAGCGAAAACAATTGCG
TCTCCTGGACGAGGAATCTTGGCGATGGACGAGTCGAACGCGACTTGCGG
GAAGCGTTTGGACTCGATAGGGCTAGAGAACACTGAGGCAAACCGACAAG
CATACAGGACATTGCTGGTCTCTGCACCAGGACTCGGACAGTACATCTCC
GTATGGAAGTAGGGTTTGGTCCCACTTGTTGGCTCTAACAATGAGTCATG
GTGCCAAGGGCTCGATGGTCTATCCTCCCGAACTGCTGCTTACTATCAAC
AGGGTGCTCGTTTCGCCAAATGGCGTACTGTCGTGAGCATTCCCAATGGT
CCGTCTGCTCTAGCTGTTAAAGAAGCTGCTTGGGGCCTTGCCCGATACGC
TGCCATTTCACAAGACAGTGGATTGGTTCCAATAGTGGAGCCAGAGATAT
TGTTGGACGGAGAACACGACATTGACAGGACTTACGAAGTAGCAGAGAAG
GTTTGGGCTGAGGTTTTCTTTTACCTTGCTCAGAACAATGTCATGTTTGA
AGGTATTCTCCTGAAGCCGAGCATGGTGACTCCCGGAGCCGAGTCTAAAG
ACAGAGCTACTCCTGAACAAGTTGCCTCCTACACCCTTAAACTCCTCCGC
AACAGAATCCCTCCGGCCGTCCCCGGAATCATGGTTCTTGTCGGGAGGAC
AGTCTGAGTTGGAGGCAACGTTGAACCTGAACGCGATGAACCAAGCACCA
AACCCGTGGCATGTATCCTTCTCCTACGCACGTGCCCTGCAGAACACATG
TTTGAAAACATGGGGAGGCAGAGCTGAGAACGTGAACGCAGCTCAGACCA
CTCTATTGGCTAGAGCCAAGGCCAATTCGCTGGCTCAGCTTGGAAAATAC
ACAGGAGAAGGTGAGTCTGAAGAGGCTAAGGAGGGTATGTTCGTCAAAGG
CTACACCTATTGAAGAGAATAATTAATGATGCTGTGAAATTGGAGACGAA
GGCCGATTATGTTTTGATTGCATCTGTATTTGAGTTGGGTTGTCCTTATA
AATATGTCAAAAACATTTTATTTTGTCTGGTTAATTTGCATTAGCTACTC
CTTTAATAAGTTTTTGTTTTTTCTGATATATATATATATATTGATGAAGT
TATCT back to topprotein sequence of BraA01g000220.3.5C.6 >BraA01g000220.3.5C.6-P1 ID=BraA01g000220.3.5C.6-P1|Name=BraA01g000220.3.5C.6|organism=Brassica rapa chifu|type=polypeptide|length=117bp
MASTSLLKASPVLDKSEWVKGQSVLFRQPSSAAVVIRNRATSLTVRAASS
YADELVKTAKTIASPGRGILAMDESNATCGKRLDSIGLENTEANRQAYRT
LLVSAPGLGQYISVWK. back to topmRNA from alignment at A01:105964..108309- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >BraA01g000220.3.5C.6 ID=BraA01g000220.3.5C.6|Name=BraA01g000220.3.5C.6|organism=Brassica rapa chifu|type=mRNA|length=2346bp|location=Sequence derived from alignment at A01:105964..108309- (Brassica rapa chifu)
AGAGATAAGGTGGTGGTGTGTGTGTGTGTCATCATTCATAAGCCACTGTG
TGTCTCTCGAACAAACCAAATTAAGGCAGAGAGAAGAGAAAGAGATAACA
TTTAACAAAAGATGGCATCAACATCACTCCTCAAGGCATCTCCTGTGTTG
GACAAATCGGAGTGGGTCAAGGGACAAAGCGTTCTCTTCCGTCAGCCATC
TTCCGCCGCCGTCGTCATACGTAACCGCGCCACCTCCCTTACCGTCCGTG
CCGCTTCTTCCTACGCCGATGAGCTTGTTAAGACAGCGGTTAGTACTCCC
ACCCACACATATCCTCTTCTTTGTCACGTGTCTTATCTGCAGGATACATA
AAGGTTTTTTACTTCTTTTACTTCTTTTATTCTTTTGATCTTTTGAATTG
GAATGCCTAACAAAATTAATTATGTTCTATTTTCAATTCTTTTTTTATTA
ATTTGTAGTCTTAACTTTTCTTTCTTTTCACAACCATTTTTTCACTAGTT
GGGACTTTGGGTTGATTTTAGTTCATGTTTGTTAATATAAGAGCTCATAT
TCATAGATAAAAGTTAGTATAAAATAACTCGAATTACGATAATAATGATG
TTTTATGGTGTTGGGAGCAGAAAACAATTGCGTCTCCTGGACGAGGAATC
TTGGCGATGGACGAGTCGAACGCGACTTGCGGGAAGCGTTTGGACTCGAT
AGGGCTAGAGAACACTGAGGCAAACCGACAAGCATACAGGACATTGCTGG
TCTCTGCACCAGGACTCGGACAGTACATCTCCGGTGCAATCCTGTTCGAG
GAGACTCTGTATCAGTCGACAACCGAAGGCAAGAAAATGGTCGACGTCCT
CGTCGAGCAGAACATCGTCCCCGGTATCAAAGTCGACAAGGTATGACTAA
TTAAAGTGCATGCTTATTTTTTATATATATGTACCTAACGTGGTGCTTGA
TTAGAGGAATCTAATTGCGAGTTGTATCTATTTATGGAAGTAGGGTTTGG
TCCCACTTGTTGGCTCTAACAATGAGTCATGGTGCCAAGGGCTCGATGGT
CTATCCTCCCGAACTGCTGCTTACTATCAACAGGGTGCTCGTTTCGCCAA
ATGGTATAGTACCCTCTGTTCCTATCCAAAATGTTTCCTCTCGGCTGAGT
TTTTTCTTTGACTTTTGTACTCTTGATGGTTTAATTAGGCGTACTGTCGT
GAGCATTCCCAATGGTCCGTCTGCTCTAGCTGTTAAAGAAGCTGCTTGGG
GCCTTGCCCGATACGCTGCCATTTCACAAGTAAACACACATTGCTTCTCT
TTCAAGCAACAGGTCAACTCGGATTCTTTTAAAGCTATTATTTCACACGC
AGATTGTGTTTTGTCTATTCAGGACAGTGGATTGGTTCCAATAGTGGAGC
CAGAGATATTGTTGGACGGAGAACACGACATTGACAGGACTTACGAAGTA
GCAGAGAAGGTTTGGGCTGAGGTTTTCTTTTACCTTGCTCAGAACAATGT
CATGTTTGAAGGTATTACTAGCTAAGTATATGGAGCTGCTTATCTTATAT
TATCAAGTTGTGTTAAAATATCAACATCTTGTACAAAGGTATTCTCCTGA
AGCCGAGCATGGTGACTCCCGGAGCCGAGTCTAAAGACAGAGCTACTCCT
GAACAAGTTGCCTCCTACACCCTTAAACTCCTCCGCAACAGAATCCCTCC
GGCCGTCCCCGGAATCATGGCAAGCTCTATTCCTCTCTCTTCACTTCACA
TAGTATAAAAATATCTATAAAAATCAAAATATTGCTTGATTTGATGGAAA
TTGCTTATGATGAGAACCCTAGATCTTGGTTGCTTGAGATGGAAGTAAAG
TTTTTTTTTTGTTTTGGTTTTGCAGTTCTTGTCGGGAGGACAGTCTGAGT
TGGAGGCAACGTTGAACCTGAACGCGATGAACCAAGCACCAAACCCGTGG
CATGTATCCTTCTCCTACGCACGTGCCCTGCAGAACACATGTTTGAAAAC
ATGGGGAGGCAGAGCTGAGAACGTGAACGCAGCTCAGACCACTCTATTGG
CTAGAGCCAAGGCCAATTCGCTGGCTCAGCTTGGAAAATACACAGGAGAA
GGTGAGTCTGAAGAGGCTAAGGAGGGTATGTTCGTCAAAGGCTACACCTA
TTGAAGAGAATAATTAATGATGCTGTGAAATTGGAGACGAAGGCCGATTA
TGTTTTGATTGCATCTGTATTTGAGTTGGGTTGTCCTTATAAATATGTCA
AAAACATTTTATTTTGTCTGGTTAATTTGCATTAGCTACTCCTTTAATAA
GTTTTTGTTTTTTCTGATATATATATATATATTGATGAAGTTATCT back to topCoding sequence (CDS) from alignment at A01:105964..108309- >BraA01g000220.3.5C.6 ID=BraA01g000220.3.5C.6|Name=BraA01g000220.3.5C.6|organism=Brassica rapa chifu|type=CDS|length=351bp|location=Sequence derived from alignment at A01:105964..108309- (Brassica rapa chifu)
ATGGCATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGA
GTGGGTCAAGGGACAAAGCGTTCTCTTCCGTCAGCCATCTTCCGCCGCCG
TCGTCATACGTAACCGCGCCACCTCCCTTACCGTCCGTGCCGCTTCTTCC
TACGCCGATGAGCTTGTTAAGACAGCGAAAACAATTGCGTCTCCTGGACG
AGGAATCTTGGCGATGGACGAGTCGAACGCGACTTGCGGGAAGCGTTTGG
ACTCGATAGGGCTAGAGAACACTGAGGCAAACCGACAAGCATACAGGACA
TTGCTGGTCTCTGCACCAGGACTCGGACAGTACATCTCCGTATGGAAGTA
G back to top
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