BraA01g000220.3.5C.6 (mRNA) Brassica rapa chifu

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	BraA01g000220.3.5C.6
Unique Name	BraA01g000220.3.5C.6
Type	mRNA
Organism	Brassica rapa chifu (field mustard)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
BraA01g000220.3.5C	BraA01g000220.3.5C	Brassica rapa chifu	gene	A01 105936..108344 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BraA01g000220.3.5C.6.exon7	BraA01g000220.3.5C.6.exon7	Brassica rapa chifu	exon	A01 105964..106434 -
BraA01g000220.3.5C.6.exon6	BraA01g000220.3.5C.6.exon6	Brassica rapa chifu	exon	A01 106590..106721 -
BraA01g000220.3.5C.6.exon5	BraA01g000220.3.5C.6.exon5	Brassica rapa chifu	exon	A01 106799..106937 -
BraA01g000220.3.5C.6.exon4	BraA01g000220.3.5C.6.exon4	Brassica rapa chifu	exon	A01 107031..107121 -
BraA01g000220.3.5C.6.exon3	BraA01g000220.3.5C.6.exon3	Brassica rapa chifu	exon	A01 107207..107327 -
BraA01g000220.3.5C.6.exon2	BraA01g000220.3.5C.6.exon2	Brassica rapa chifu	exon	A01 107527..107689 -
BraA01g000220.3.5C.6.exon1	BraA01g000220.3.5C.6.exon1	Brassica rapa chifu	exon	A01 108022..108309 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BraA01g000220.3.5C.6.utr3p5	BraA01g000220.3.5C.6.utr3p5	Brassica rapa chifu	three_prime_UTR	A01 105964..106434 -
BraA01g000220.3.5C.6.utr3p4	BraA01g000220.3.5C.6.utr3p4	Brassica rapa chifu	three_prime_UTR	A01 106590..106721 -
BraA01g000220.3.5C.6.utr3p3	BraA01g000220.3.5C.6.utr3p3	Brassica rapa chifu	three_prime_UTR	A01 106799..106937 -
BraA01g000220.3.5C.6.utr3p2	BraA01g000220.3.5C.6.utr3p2	Brassica rapa chifu	three_prime_UTR	A01 107031..107121 -
BraA01g000220.3.5C.6.utr3p1	BraA01g000220.3.5C.6.utr3p1	Brassica rapa chifu	three_prime_UTR	A01 107207..107316 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
cds.BraA01g000220.3.5C.6	cds.BraA01g000220.3.5C.6	Brassica rapa chifu	CDS	A01 108022..108198 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BraA01g000220.3.5C.6.utr5p1	BraA01g000220.3.5C.6.utr5p1	Brassica rapa chifu	five_prime_UTR	A01 108199..108309 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
BraA01g000220.3.5C.6	BraA01g000220.3.5C.6-P1	Brassica rapa chifu	polypeptide	A01 107317..108198 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at A01:105964..108309-
coding sequence from alignment at A01:105964..108309-

spliced messenger RNA

>BraA01g000220.3.5C.6 ID=BraA01g000220.3.5C.6|Name=BraA01g000220.3.5C.6|organism=Brassica rapa chifu|type=mRNA|length=1405bp|location=Sequence derived from alignment at A01:105964..108309- (Brassica rapa chifu)|Notes=Excludes all bases but those of type(s): exon.  
AGAGATAAGGTGGTGGTGTGTGTGTGTGTCATCATTCATAAGCCACTGTG
TGTCTCTCGAACAAACCAAATTAAGGCAGAGAGAAGAGAAAGAGATAACA
TTTAACAAAAGATGGCATCAACATCACTCCTCAAGGCATCTCCTGTGTTG
GACAAATCGGAGTGGGTCAAGGGACAAAGCGTTCTCTTCCGTCAGCCATC
TTCCGCCGCCGTCGTCATACGTAACCGCGCCACCTCCCTTACCGTCCGTG
CCGCTTCTTCCTACGCCGATGAGCTTGTTAAGACAGCGAAAACAATTGCG
TCTCCTGGACGAGGAATCTTGGCGATGGACGAGTCGAACGCGACTTGCGG
GAAGCGTTTGGACTCGATAGGGCTAGAGAACACTGAGGCAAACCGACAAG
CATACAGGACATTGCTGGTCTCTGCACCAGGACTCGGACAGTACATCTCC
GTATGGAAGTAGGGTTTGGTCCCACTTGTTGGCTCTAACAATGAGTCATG
GTGCCAAGGGCTCGATGGTCTATCCTCCCGAACTGCTGCTTACTATCAAC
AGGGTGCTCGTTTCGCCAAATGGCGTACTGTCGTGAGCATTCCCAATGGT
CCGTCTGCTCTAGCTGTTAAAGAAGCTGCTTGGGGCCTTGCCCGATACGC
TGCCATTTCACAAGACAGTGGATTGGTTCCAATAGTGGAGCCAGAGATAT
TGTTGGACGGAGAACACGACATTGACAGGACTTACGAAGTAGCAGAGAAG
GTTTGGGCTGAGGTTTTCTTTTACCTTGCTCAGAACAATGTCATGTTTGA
AGGTATTCTCCTGAAGCCGAGCATGGTGACTCCCGGAGCCGAGTCTAAAG
ACAGAGCTACTCCTGAACAAGTTGCCTCCTACACCCTTAAACTCCTCCGC
AACAGAATCCCTCCGGCCGTCCCCGGAATCATGGTTCTTGTCGGGAGGAC
AGTCTGAGTTGGAGGCAACGTTGAACCTGAACGCGATGAACCAAGCACCA
AACCCGTGGCATGTATCCTTCTCCTACGCACGTGCCCTGCAGAACACATG
TTTGAAAACATGGGGAGGCAGAGCTGAGAACGTGAACGCAGCTCAGACCA
CTCTATTGGCTAGAGCCAAGGCCAATTCGCTGGCTCAGCTTGGAAAATAC
ACAGGAGAAGGTGAGTCTGAAGAGGCTAAGGAGGGTATGTTCGTCAAAGG
CTACACCTATTGAAGAGAATAATTAATGATGCTGTGAAATTGGAGACGAA
GGCCGATTATGTTTTGATTGCATCTGTATTTGAGTTGGGTTGTCCTTATA
AATATGTCAAAAACATTTTATTTTGTCTGGTTAATTTGCATTAGCTACTC
CTTTAATAAGTTTTTGTTTTTTCTGATATATATATATATATTGATGAAGT
TATCT

protein sequence of BraA01g000220.3.5C.6

>BraA01g000220.3.5C.6-P1 ID=BraA01g000220.3.5C.6-P1|Name=BraA01g000220.3.5C.6|organism=Brassica rapa chifu|type=polypeptide|length=117bp
MASTSLLKASPVLDKSEWVKGQSVLFRQPSSAAVVIRNRATSLTVRAASS
YADELVKTAKTIASPGRGILAMDESNATCGKRLDSIGLENTEANRQAYRT
LLVSAPGLGQYISVWK.

mRNA from alignment at A01:105964..108309-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>BraA01g000220.3.5C.6 ID=BraA01g000220.3.5C.6|Name=BraA01g000220.3.5C.6|organism=Brassica rapa chifu|type=mRNA|length=2346bp|location=Sequence derived from alignment at A01:105964..108309- (Brassica rapa chifu)
AGAGATAAGGTGGTGGTGTGTGTGTGTGTCATCATTCATAAGCCACTGTG
TGTCTCTCGAACAAACCAAATTAAGGCAGAGAGAAGAGAAAGAGATAACA
TTTAACAAAAGATGGCATCAACATCACTCCTCAAGGCATCTCCTGTGTTG
GACAAATCGGAGTGGGTCAAGGGACAAAGCGTTCTCTTCCGTCAGCCATC
TTCCGCCGCCGTCGTCATACGTAACCGCGCCACCTCCCTTACCGTCCGTG
CCGCTTCTTCCTACGCCGATGAGCTTGTTAAGACAGCGGTTAGTACTCCC
ACCCACACATATCCTCTTCTTTGTCACGTGTCTTATCTGCAGGATACATA
AAGGTTTTTTACTTCTTTTACTTCTTTTATTCTTTTGATCTTTTGAATTG
GAATGCCTAACAAAATTAATTATGTTCTATTTTCAATTCTTTTTTTATTA
ATTTGTAGTCTTAACTTTTCTTTCTTTTCACAACCATTTTTTCACTAGTT
GGGACTTTGGGTTGATTTTAGTTCATGTTTGTTAATATAAGAGCTCATAT
TCATAGATAAAAGTTAGTATAAAATAACTCGAATTACGATAATAATGATG
TTTTATGGTGTTGGGAGCAGAAAACAATTGCGTCTCCTGGACGAGGAATC
TTGGCGATGGACGAGTCGAACGCGACTTGCGGGAAGCGTTTGGACTCGAT
AGGGCTAGAGAACACTGAGGCAAACCGACAAGCATACAGGACATTGCTGG
TCTCTGCACCAGGACTCGGACAGTACATCTCCGGTGCAATCCTGTTCGAG
GAGACTCTGTATCAGTCGACAACCGAAGGCAAGAAAATGGTCGACGTCCT
CGTCGAGCAGAACATCGTCCCCGGTATCAAAGTCGACAAGGTATGACTAA
TTAAAGTGCATGCTTATTTTTTATATATATGTACCTAACGTGGTGCTTGA
TTAGAGGAATCTAATTGCGAGTTGTATCTATTTATGGAAGTAGGGTTTGG
TCCCACTTGTTGGCTCTAACAATGAGTCATGGTGCCAAGGGCTCGATGGT
CTATCCTCCCGAACTGCTGCTTACTATCAACAGGGTGCTCGTTTCGCCAA
ATGGTATAGTACCCTCTGTTCCTATCCAAAATGTTTCCTCTCGGCTGAGT
TTTTTCTTTGACTTTTGTACTCTTGATGGTTTAATTAGGCGTACTGTCGT
GAGCATTCCCAATGGTCCGTCTGCTCTAGCTGTTAAAGAAGCTGCTTGGG
GCCTTGCCCGATACGCTGCCATTTCACAAGTAAACACACATTGCTTCTCT
TTCAAGCAACAGGTCAACTCGGATTCTTTTAAAGCTATTATTTCACACGC
AGATTGTGTTTTGTCTATTCAGGACAGTGGATTGGTTCCAATAGTGGAGC
CAGAGATATTGTTGGACGGAGAACACGACATTGACAGGACTTACGAAGTA
GCAGAGAAGGTTTGGGCTGAGGTTTTCTTTTACCTTGCTCAGAACAATGT
CATGTTTGAAGGTATTACTAGCTAAGTATATGGAGCTGCTTATCTTATAT
TATCAAGTTGTGTTAAAATATCAACATCTTGTACAAAGGTATTCTCCTGA
AGCCGAGCATGGTGACTCCCGGAGCCGAGTCTAAAGACAGAGCTACTCCT
GAACAAGTTGCCTCCTACACCCTTAAACTCCTCCGCAACAGAATCCCTCC
GGCCGTCCCCGGAATCATGGCAAGCTCTATTCCTCTCTCTTCACTTCACA
TAGTATAAAAATATCTATAAAAATCAAAATATTGCTTGATTTGATGGAAA
TTGCTTATGATGAGAACCCTAGATCTTGGTTGCTTGAGATGGAAGTAAAG
TTTTTTTTTTGTTTTGGTTTTGCAGTTCTTGTCGGGAGGACAGTCTGAGT
TGGAGGCAACGTTGAACCTGAACGCGATGAACCAAGCACCAAACCCGTGG
CATGTATCCTTCTCCTACGCACGTGCCCTGCAGAACACATGTTTGAAAAC
ATGGGGAGGCAGAGCTGAGAACGTGAACGCAGCTCAGACCACTCTATTGG
CTAGAGCCAAGGCCAATTCGCTGGCTCAGCTTGGAAAATACACAGGAGAA
GGTGAGTCTGAAGAGGCTAAGGAGGGTATGTTCGTCAAAGGCTACACCTA
TTGAAGAGAATAATTAATGATGCTGTGAAATTGGAGACGAAGGCCGATTA
TGTTTTGATTGCATCTGTATTTGAGTTGGGTTGTCCTTATAAATATGTCA
AAAACATTTTATTTTGTCTGGTTAATTTGCATTAGCTACTCCTTTAATAA
GTTTTTGTTTTTTCTGATATATATATATATATTGATGAAGTTATCT

Coding sequence (CDS) from alignment at A01:105964..108309-

>BraA01g000220.3.5C.6 ID=BraA01g000220.3.5C.6|Name=BraA01g000220.3.5C.6|organism=Brassica rapa chifu|type=CDS|length=351bp|location=Sequence derived from alignment at A01:105964..108309- (Brassica rapa chifu)
ATGGCATCAACATCACTCCTCAAGGCATCTCCTGTGTTGGACAAATCGGA
GTGGGTCAAGGGACAAAGCGTTCTCTTCCGTCAGCCATCTTCCGCCGCCG
TCGTCATACGTAACCGCGCCACCTCCCTTACCGTCCGTGCCGCTTCTTCC
TACGCCGATGAGCTTGTTAAGACAGCGAAAACAATTGCGTCTCCTGGACG
AGGAATCTTGGCGATGGACGAGTCGAACGCGACTTGCGGGAAGCGTTTGG
ACTCGATAGGGCTAGAGAACACTGAGGCAAACCGACAAGCATACAGGACA
TTGCTGGTCTCTGCACCAGGACTCGGACAGTACATCTCCGTATGGAAGTA
G