BolSC35t60678H-R-P (polypeptide) Brassica oleracea HDEM

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameBolSC35t60678H-R
Unique NameBolSC35t60678H-R-P
Typepolypeptide
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Sequence length184
Homology
[Close]
BLAST of BolSC35t60678H-R vs. GenBank_protein
Match: VDD65450.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 355 bits (910), Expect = 3.300e-123
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0 
Query:    1 MIHRNNESSLISTHLRSPNVREVLYSILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSEQNSFWLKNLFLVALEQLGDCLEEIRGSGGNMLWGGDPAYGVKSIRSKKTDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKDIYSLIRKRKNVSGD 183
            MIHRNNESSLISTHLRSPNVREVLYSILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSEQNSFWLKNLFLVALEQLGDCLEEIRGSGGNMLWGGDPAYGVKSIRSKKTDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKDIYSLIRKRKNVSGD
Sbjct:    1 MIHRNNESSLISTHLRSPNVREVLYSILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSEQNSFWLKNLFLVALEQLGDCLEEIRGSGGNMLWGGDPAYGVKSIRSKKTDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKDIYSLIRKRKNVSGD 183
[Close]
BLAST of BolSC35t60678H-R vs. GenBank_protein
Match: VDD65610.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 355 bits (910), Expect = 1.210e-120
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0 
Query:    1 MIHRNNESSLISTHLRSPNVREVLYSILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSEQNSFWLKNLFLVALEQLGDCLEEIRGSGGNMLWGGDPAYGVKSIRSKKTDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKDIYSLIRKRKNVSGD 183
            MIHRNNESSLISTHLRSPNVREVLYSILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSEQNSFWLKNLFLVALEQLGDCLEEIRGSGGNMLWGGDPAYGVKSIRSKKTDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKDIYSLIRKRKNVSGD
Sbjct:   40 MIHRNNESSLISTHLRSPNVREVLYSILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSEQNSFWLKNLFLVALEQLGDCLEEIRGSGGNMLWGGDPAYGVKSIRSKKTDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKDIYSLIRKRKNVSGD 222
[Close]
BLAST of BolSC35t60678H-R vs. GenBank_protein
Match: CAF1831065.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 355 bits (910), Expect = 3.300e-117
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0 
Query:    1 MIHRNNESSLISTHLRSPNVREVLYSILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSEQNSFWLKNLFLVALEQLGDCLEEIRGSGGNMLWGGDPAYGVKSIRSKKTDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKDIYSLIRKRKNVSGD 183
            MIHRNNESSLISTHLRSPNVREVLYSILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSEQNSFWLKNLFLVALEQLGDCLEEIRGSGGNMLWGGDPAYGVKSIRSKKTDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKDIYSLIRKRKNVSGD
Sbjct:   81 MIHRNNESSLISTHLRSPNVREVLYSILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSEQNSFWLKNLFLVALEQLGDCLEEIRGSGGNMLWGGDPAYGVKSIRSKKTDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKDIYSLIRKRKNVSGD 263
[Close]
BLAST of BolSC35t60678H-R vs. GenBank_protein
Match: CDY19677.1 (BnaC09g29330D [Brassica napus])

HSP 1 Score: 355 bits (910), Expect = 4.650e-116
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0 
Query:    1 MIHRNNESSLISTHLRSPNVREVLYSILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSEQNSFWLKNLFLVALEQLGDCLEEIRGSGGNMLWGGDPAYGVKSIRSKKTDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKDIYSLIRKRKNVSGD 183
            MIHRNNESSLISTHLRSPNVREVLYSILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSEQNSFWLKNLFLVALEQLGDCLEEIRGSGGNMLWGGDPAYGVKSIRSKKTDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKDIYSLIRKRKNVSGD
Sbjct:  141 MIHRNNESSLISTHLRSPNVREVLYSILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSEQNSFWLKNLFLVALEQLGDCLEEIRGSGGNMLWGGDPAYGVKSIRSKKTDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKDIYSLIRKRKNVSGD 323
[Close]
BLAST of BolSC35t60678H-R vs. GenBank_protein
Match: VDD26010.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 355 bits (910), Expect = 6.490e-116
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0 
Query:    1 MIHRNNESSLISTHLRSPNVREVLYSILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSEQNSFWLKNLFLVALEQLGDCLEEIRGSGGNMLWGGDPAYGVKSIRSKKTDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKDIYSLIRKRKNVSGD 183
            MIHRNNESSLISTHLRSPNVREVLYSILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSEQNSFWLKNLFLVALEQLGDCLEEIRGSGGNMLWGGDPAYGVKSIRSKKTDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKDIYSLIRKRKNVSGD
Sbjct:  154 MIHRNNESSLISTHLRSPNVREVLYSILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSEQNSFWLKNLFLVALEQLGDCLEEIRGSGGNMLWGGDPAYGVKSIRSKKTDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKDIYSLIRKRKNVSGD 336
[Close]
BLAST of BolSC35t60678H-R vs. GenBank_protein
Match: VDD65696.1 (unnamed protein product [Brassica oleracea])

HSP 1 Score: 355 bits (910), Expect = 2.680e-113
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0 
Query:    1 MIHRNNESSLISTHLRSPNVREVLYSILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSEQNSFWLKNLFLVALEQLGDCLEEIRGSGGNMLWGGDPAYGVKSIRSKKTDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKDIYSLIRKRKNVSGD 183
            MIHRNNESSLISTHLRSPNVREVLYSILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSEQNSFWLKNLFLVALEQLGDCLEEIRGSGGNMLWGGDPAYGVKSIRSKKTDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKDIYSLIRKRKNVSGD
Sbjct:   34 MIHRNNESSLISTHLRSPNVREVLYSILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSEQNSFWLKNLFLVALEQLGDCLEEIRGSGGNMLWGGDPAYGVKSIRSKKTDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKDIYSLIRKRKNVSGD 216
[Close]
BLAST of BolSC35t60678H-R vs. GenBank_protein
Match: KAG5385225.1 (hypothetical protein IGI04_036695 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 348 bits (892), Expect = 1.330e-112
Identity = 180/183 (98.36%), Postives = 181/183 (98.91%), Query Frame = 0 
Query:    1 MIHRNNESSLISTHLRSPNVREVLYSILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSEQNSFWLKNLFLVALEQLGDCLEEIRGSGGNMLWGGDPAYGVKSIRSKKTDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKDIYSLIRKRKNVSGD 183
            MIHRNNESSLIS HLRSPNVREVLYSILFLLLVAGYIVRTHLLFVSRAYSELQT+FEKIKSLMIPSYMIELRKLLDRYPTSEQNSFWLKNLFLVALEQLGDCLEEIRGSG NMLWGGDPAYGVKSIRSKKTDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKDIYSLIRKRKNVSGD
Sbjct:  212 MIHRNNESSLISKHLRSPNVREVLYSILFLLLVAGYIVRTHLLFVSRAYSELQTDFEKIKSLMIPSYMIELRKLLDRYPTSEQNSFWLKNLFLVALEQLGDCLEEIRGSGCNMLWGGDPAYGVKSIRSKKTDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKDIYSLIRKRKNVSGD 394
[Close]
BLAST of BolSC35t60678H-R vs. GenBank_protein
Match: KAG5383809.1 (hypothetical protein IGI04_035279 [Brassica rapa subsp. trilocularis] >KAG5383820.1 hypothetical protein IGI04_035290 [Brassica rapa subsp. trilocularis] >KAG5385231.1 hypothetical protein IGI04_036701 [Brassica rapa subsp. trilocularis])

HSP 1 Score: 355 bits (910), Expect = 5.910e-112
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0 
Query:    1 MIHRNNESSLISTHLRSPNVREVLYSILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSEQNSFWLKNLFLVALEQLGDCLEEIRGSGGNMLWGGDPAYGVKSIRSKKTDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKDIYSLIRKRKNVSGD 183
            MIHRNNESSLISTHLRSPNVREVLYSILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSEQNSFWLKNLFLVALEQLGDCLEEIRGSGGNMLWGGDPAYGVKSIRSKKTDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKDIYSLIRKRKNVSGD
Sbjct:  607 MIHRNNESSLISTHLRSPNVREVLYSILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSEQNSFWLKNLFLVALEQLGDCLEEIRGSGGNMLWGGDPAYGVKSIRSKKTDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKDIYSLIRKRKNVSGD 789
[Close]
BLAST of BolSC35t60678H-R vs. GenBank_protein
Match: VDD25480.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 355 bits (910), Expect = 6.750e-111
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0 
Query:    1 MIHRNNESSLISTHLRSPNVREVLYSILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSEQNSFWLKNLFLVALEQLGDCLEEIRGSGGNMLWGGDPAYGVKSIRSKKTDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKDIYSLIRKRKNVSGD 183
            MIHRNNESSLISTHLRSPNVREVLYSILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSEQNSFWLKNLFLVALEQLGDCLEEIRGSGGNMLWGGDPAYGVKSIRSKKTDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKDIYSLIRKRKNVSGD
Sbjct:  847 MIHRNNESSLISTHLRSPNVREVLYSILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSEQNSFWLKNLFLVALEQLGDCLEEIRGSGGNMLWGGDPAYGVKSIRSKKTDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKDIYSLIRKRKNVSGD 1029
[Close]
BLAST of BolSC35t60678H-R vs. GenBank_protein
Match: VDD25529.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 355 bits (910), Expect = 2.840e-110
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0 
Query:    1 MIHRNNESSLISTHLRSPNVREVLYSILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSEQNSFWLKNLFLVALEQLGDCLEEIRGSGGNMLWGGDPAYGVKSIRSKKTDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKDIYSLIRKRKNVSGD 183
            MIHRNNESSLISTHLRSPNVREVLYSILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSEQNSFWLKNLFLVALEQLGDCLEEIRGSGGNMLWGGDPAYGVKSIRSKKTDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKDIYSLIRKRKNVSGD
Sbjct:  860 MIHRNNESSLISTHLRSPNVREVLYSILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSEQNSFWLKNLFLVALEQLGDCLEEIRGSGGNMLWGGDPAYGVKSIRSKKTDLKINFIDIIDLISIIPNPINRITFSRNTRHLSHTSKDIYSLIRKRKNVSGD 1042
The following BLAST results are available for this feature:
BLAST of BolSC35t60678H-R vs. GenBank_protein
Analysis Date: 2022-03-19 (Diamond on OGS1.0 vs NR)
Total hits: 20
Match NameE-valueIdentityDescription
VDD65450.13.300e-123100.00unnamed protein product [Brassica oleracea][more]
VDD65610.11.210e-120100.00unnamed protein product [Brassica oleracea][more]
CAF1831065.13.300e-117100.00unnamed protein product [Brassica napus][more]
CDY19677.14.650e-116100.00BnaC09g29330D [Brassica napus][more]
VDD26010.16.490e-116100.00unnamed protein product [Brassica rapa][more]
VDD65696.12.680e-113100.00unnamed protein product [Brassica oleracea][more]
KAG5385225.11.330e-11298.36hypothetical protein IGI04_036695 [Brassica rapa s... [more]
KAG5383809.15.910e-112100.00hypothetical protein IGI04_035279 [Brassica rapa s... [more]
VDD25480.16.750e-111100.00unnamed protein product [Brassica rapa][more]
VDD25529.12.840e-110100.00unnamed protein product [Brassica rapa][more]

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GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005524 ATP binding
InterPro
Analysis Name: Interproscan on OGS1.0
Date Performed: 2022-03-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008543Uncharacterised protein family Ycf2PFAMPF05695DUF825coord: 1..167
e-value: 2.6E-97
score: 326.5
NoneNo IPR availablePANTHERPTHR33078:SF26PROTEIN YCF2coord: 6..180
NoneNo IPR availablePANTHERPTHR33078PROTEIN YCF2-RELATEDcoord: 6..180
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 23..45
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 46..183
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..22
NoneNo IPR availableTMHMMTMhelixcoord: 23..45

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Boleracea_scaffold_35contigBoleracea_scaffold_35:115192..115743 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
Interproscan on OGS1.02022-03-19
Blast2go on OGS1.02022-03-19
Diamond on OGS1.0 vs NR2022-03-19
Brassica oleracea HDEM OGS1.02018-11-02
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
BolSC35t60678H-RBolSC35t60678H-RBrassica oleracea HDEMmRNABoleracea_scaffold_35 115192..115743 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>BolSC35t60678H-R-P ID=BolSC35t60678H-R-P|Name=BolSC35t60678H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=184bp
MIHRNNESSLISTHLRSPNVREVLYSILFLLLVAGYIVRTHLLFVSRAYS
ELQTEFEKIKSLMIPSYMIELRKLLDRYPTSEQNSFWLKNLFLVALEQLG
DCLEEIRGSGGNMLWGGDPAYGVKSIRSKKTDLKINFIDIIDLISIIPNP
INRITFSRNTRHLSHTSKDIYSLIRKRKNVSGD.
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008543Uncharacterised_Ycf2
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0009570chloroplast stroma