BolC1t00700H-R (mRNA) Brassica oleracea HDEM

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBolC1t00700H-R
Unique NameBolC1t00700H-R
TypemRNA
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C1contigC1:3791266..3791967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica oleracea HDEM OGS1.02018-11-02
Properties
Property NameValue
Stop1
Start1
Cds size510
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC1t00700HBolC1t00700HBrassica oleracea HDEMgeneC1 3791266..3791967 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00700H-RBolC1t00700H-R-PBrassica oleracea HDEMpolypeptideC1 3791266..3791967 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00700H_exon1BolC1t00700H_exon1Brassica oleracea HDEMexonC1 3791266..3791600 -
BolC1t00700H_exon2BolC1t00700H_exon2Brassica oleracea HDEMexonC1 3791793..3791967 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00700HBolC1t00700HBrassica oleracea HDEMCDSC1 3791266..3791600 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BolC1t00700H-R ID=BolC1t00700H-R|Name=BolC1t00700H-R|organism=Brassica oleracea HDEM|type=mRNA|length=510bp|location=Sequence derived from alignment at C1:3791266..3791967- (Brassica oleracea HDEM)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATCTTTTTCCCCTCTAGTCATCATCTTCCTCTGCATTTTCTTCTT
GTCCGTAAACGCCAATGAGGTAACCGTCGGTGGAAAATCCGGTGACTGGA
AGATCCCTCCTTCATCTTCTGACTCTTTCAACGAATGGTCTCAAAAGGCT
CGCTTCAAAGTTGGCGACTTTCTCGTTTTTAGCTACGAAGCTGGTAAAGA
CTCGGTGCTGCAAGTGACAAGAGAGGCGTACGAGAAATGCAACACCACGA
GCCCGAAAGCCAGCTACACCGACGGGAACACCAAGGTGAAGCTAGAACAA
CCCGGTCCGGTCTACTTCATTAGTGGAACGCAAGGTCACTGTCAAAAGGG
ACAGAAGCTACGCCTTGTGGTAGTCACTCCTCGCAGCTCTCTCTCACCGG
CTCCTTCTCCATCTGACGGTCCCGCCGTTGCTCCTACTAGTGGCGCTGCT
AAGCTCACCGGCGTCTTCAGTGTTGTGGGCCTTGGTCTTGGACTCTGGGC
GTTGTTCTGA
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protein sequence of BolC1t00700H-R

>BolC1t00700H-R-P ID=BolC1t00700H-R-P|Name=BolC1t00700H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=170bp
MASFSPLVIIFLCIFFLSVNANEVTVGGKSGDWKIPPSSSDSFNEWSQKA
RFKVGDFLVFSYEAGKDSVLQVTREAYEKCNTTSPKASYTDGNTKVKLEQ
PGPVYFISGTQGHCQKGQKLRLVVVTPRSSLSPAPSPSDGPAVAPTSGAA
KLTGVFSVVGLGLGLWALF.
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mRNA from alignment at C1:3791266..3791967-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>BolC1t00700H-R ID=BolC1t00700H-R|Name=BolC1t00700H-R|organism=Brassica oleracea HDEM|type=mRNA|length=702bp|location=Sequence derived from alignment at C1:3791266..3791967- (Brassica oleracea HDEM)
ATGGCATCTTTTTCCCCTCTAGTCATCATCTTCCTCTGCATTTTCTTCTT
GTCCGTAAACGCCAATGAGGTAACCGTCGGTGGAAAATCCGGTGACTGGA
AGATCCCTCCTTCATCTTCTGACTCTTTCAACGAATGGTCTCAAAAGGCT
CGCTTCAAAGTTGGCGACTTTCTCGGTATACCTTCAACTTCTCATCACTA
TCTCTAATCCTTACAAAACCTTTTTCTTTTATAATAAATGACTATATATT
TTACTAGAATTAACATCCTTACAAAACCCATAAACCCATTTTCATCAATT
TACTTGTTTTTTGTAATCTTCCATGATACTCTGTTTCTTATAACATTGTT
ACATGTTTTTATTCCAGTTTTTAGCTACGAAGCTGGTAAAGACTCGGTGC
TGCAAGTGACAAGAGAGGCGTACGAGAAATGCAACACCACGAGCCCGAAA
GCCAGCTACACCGACGGGAACACCAAGGTGAAGCTAGAACAACCCGGTCC
GGTCTACTTCATTAGTGGAACGCAAGGTCACTGTCAAAAGGGACAGAAGC
TACGCCTTGTGGTAGTCACTCCTCGCAGCTCTCTCTCACCGGCTCCTTCT
CCATCTGACGGTCCCGCCGTTGCTCCTACTAGTGGCGCTGCTAAGCTCAC
CGGCGTCTTCAGTGTTGTGGGCCTTGGTCTTGGACTCTGGGCGTTGTTCT
GA
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Coding sequence (CDS) from alignment at C1:3791266..3791967-

>BolC1t00700H-R ID=BolC1t00700H-R|Name=BolC1t00700H-R|organism=Brassica oleracea HDEM|type=CDS|length=510bp|location=Sequence derived from alignment at C1:3791266..3791967- (Brassica oleracea HDEM)
ATGGCATCTTTTTCCCCTCTAGTCATCATCTTCCTCTGCATTTTCTTCTT
GTCCGTAAACGCCAATGAGGTAACCGTCGGTGGAAAATCCGGTGACTGGA
AGATCCCTCCTTCATCTTCTGACTCTTTCAACGAATGGTCTCAAAAGGCT
CGCTTCAAAGTTGGCGACTTTCTCGTTTTTAGCTACGAAGCTGGTAAAGA
CTCGGTGCTGCAAGTGACAAGAGAGGCGTACGAGAAATGCAACACCACGA
GCCCGAAAGCCAGCTACACCGACGGGAACACCAAGGTGAAGCTAGAACAA
CCCGGTCCGGTCTACTTCATTAGTGGAACGCAAGGTCACTGTCAAAAGGG
ACAGAAGCTACGCCTTGTGGTAGTCACTCCTCGCAGCTCTCTCTCACCGG
CTCCTTCTCCATCTGACGGTCCCGCCGTTGCTCCTACTAGTGGCGCTGCT
AAGCTCACCGGCGTCTTCAGTGTTGTGGGCCTTGGTCTTGGACTCTGGGC
GTTGTTCTGA
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