BolC1t00685H-R (mRNA) Brassica oleracea HDEM

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameBolC1t00685H-R
Unique NameBolC1t00685H-R
TypemRNA
OrganismBrassica oleracea HDEM (cv. HDEM, Wild cabbage)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C1contigC1:3673433..3677731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Brassica oleracea HDEM OGS1.02018-11-02
Properties
Property NameValue
Stop1
Start1
Cds size1863
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
BolC1t00685HBolC1t00685HBrassica oleracea HDEMgeneC1 3673433..3677731 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00685H-RBolC1t00685H-R-PBrassica oleracea HDEMpolypeptideC1 3673433..3677731 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00685H_exon1BolC1t00685H_exon1Brassica oleracea HDEMexonC1 3673433..3673485 -
BolC1t00685H_exon2BolC1t00685H_exon2Brassica oleracea HDEMexonC1 3673610..3673652 -
BolC1t00685H_exon3BolC1t00685H_exon3Brassica oleracea HDEMexonC1 3673749..3673918 -
BolC1t00685H_exon4BolC1t00685H_exon4Brassica oleracea HDEMexonC1 3674032..3674104 -
BolC1t00685H_exon5BolC1t00685H_exon5Brassica oleracea HDEMexonC1 3674194..3674298 -
BolC1t00685H_exon6BolC1t00685H_exon6Brassica oleracea HDEMexonC1 3674468..3674567 -
BolC1t00685H_exon7BolC1t00685H_exon7Brassica oleracea HDEMexonC1 3674656..3674745 -
BolC1t00685H_exon8BolC1t00685H_exon8Brassica oleracea HDEMexonC1 3674955..3675010 -
BolC1t00685H_exon9BolC1t00685H_exon9Brassica oleracea HDEMexonC1 3675094..3675185 -
BolC1t00685H_exon10BolC1t00685H_exon10Brassica oleracea HDEMexonC1 3675423..3675613 -
BolC1t00685H_exon11BolC1t00685H_exon11Brassica oleracea HDEMexonC1 3675685..3675805 -
BolC1t00685H_exon12BolC1t00685H_exon12Brassica oleracea HDEMexonC1 3676071..3676164 -
BolC1t00685H_exon13BolC1t00685H_exon13Brassica oleracea HDEMexonC1 3676491..3676586 -
BolC1t00685H_exon14BolC1t00685H_exon14Brassica oleracea HDEMexonC1 3676691..3676794 -
BolC1t00685H_exon15BolC1t00685H_exon15Brassica oleracea HDEMexonC1 3676995..3677131 -
BolC1t00685H_exon16BolC1t00685H_exon16Brassica oleracea HDEMexonC1 3677240..3677384 -
BolC1t00685H_exon17BolC1t00685H_exon17Brassica oleracea HDEMexonC1 3677539..3677731 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
BolC1t00685HBolC1t00685HBrassica oleracea HDEMCDSC1 3673433..3673485 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>BolC1t00685H-R ID=BolC1t00685H-R|Name=BolC1t00685H-R|organism=Brassica oleracea HDEM|type=mRNA|length=1863bp|location=Sequence derived from alignment at C1:3673433..3677731- (Brassica oleracea HDEM)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGAAACACAGGAGGAACGATCTCCGTCGCTTGACGATTGCCTTAA
GCTGTTGAAAGGGGAGAGGGACGAGCAGAGGCTCGCCGGTCTACTTCTCG
TCACCAAATTCTGCAAGAACGATGATCTAGTCTCCCTCAAGAAGGTGTAC
GAAGCCGTCGGTATTCACTTTCTCGACCGCCTTCTCCGCACAGGTAGTGG
CGATGGAGGTGAAAATCGTGATGTGTATCTGCGGCTGTCTGTTACAGTTC
TTGCTGCCTTCTGCAGAGTTCCGGAGATAGCTTCTTCAGTAGATATGGTC
TCTCGAGTTCCCCTTATTCTCGAAATCATGTCGAAACGACCAGCTACCAA
CATTCTTGAAGAATGCTATGAGCTTCTGTATTTGGTGTCCACGGCTTGTG
AAGCTGGTGTGATGGCTTTGGTCAACTCAGGAGGCTTGAGAGTGATAGCT
CCCCAGATGTCTGATCTACCTGATGGCTCACATGCTATGGAGGTTGCTAT
AAAGATTCTGCAGCTATTGGTTACTAAGCTTTCCAGCGAGAGCATGAATA
TTGAACGCTTCTTTGAACTGTCCTTGGTGGTTGCTGCTGTTGCGCGACAG
TTTGCGGTCTTGCACAATGCCCTAAAGTTTGAAGCACTCCATCTACTGTC
TGCAATATTCTGTTCTGACTATTCTGCACTTCTTCATGAACCTCTCCGTT
CCATGCCAGACAGCAATTGGGCAGACTACATGCGCACAGGTGTTGTGTCA
ATTCTGCAGAATCGTGTTGCACCTTCCGAAAAGCTTCACGCATTGATTCT
GGCTGAAAGTATGATGTCAATTCTGGGTGAGAAGTGGCTTATCGGTCGAG
TAAAACTACCCAGTGTTGAGGACTATCTTCCAGCTGATAGGTGTCTTCTG
TTGGTCTTAGAGTCATCACATGTTGAGATTTCTGTTTTATCAAACGAGCT
CGCATACATGAAATATGAAGCTCCTAGTTCAACTGTTGAAGAACATCTCT
TGAAGCAACGTTATCTGGCTATCGCATTTTCTTTGGTAGAAAAGATCATC
AAGTATATATCAACCGTTGGTGAAAATGAAGGTACTCTAAGTGATGAAGC
CGTTTTCCTCAAGGTGATTAAGACGCTTGACGAGACAGTAAAAGTTGTGC
TCGAGTATCTGAAAGATGCAAAGGAACATGGAAAGAAGAGAGGAAATGAT
CTTCTTGCATCTGTGCGAGTGATTGGAAGTTATCTCGCTGAAACTCCTGA
CGCATGCAAAGAGCAGGTCCAAGATCTTCTGGACTATATGCTTTCAGTTG
AGGGCGAAGAGGAGTCCAGGCCCTTTTTGTCCACTTGCTTCTTGCTCCCA
ATGCTTTGCCAAATAACAATGAAGGATGAAGGATGTAGACTCTTGGCTTC
TTCAGGAGGCTATGTAGCAGTTGTGGAATGCCTGGTAAAACTGATCCAGT
CCGATGGTCAGAATGGTGAGGACAATGGAAGCATCTTCTTGGCTTGTGAT
ACAGTCATGAACATCCTTTTGAAGAGGGAGCCAATCAGATTTTCACCAGA
AATGTCTACATTTACCGGGCTACTGAAAGCCTTGGCGTGTTGGGCAGTTA
CAGATGGTACTAAGGATCCATCCGTAGTGATGATGGCTGCGAGCATCTGT
TCCCTGATCTTCGATTTCACATCAGAAGATGCGCTACTCAAGCAACCTGG
TTTCGATGGTGGCTCCTTGGATAGTCTGGGCCGGATCATTGCAAGAAGCT
TACCCTCATCGGGCCAGGGTACGTCAGATACAGCCGATCTTCTTGAGATC
ATAGCAGCAGGATACTCTCGGTGGGCAGATCGGTTCCCCACCATAAAGAA
GCACAACCGTTGA
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protein sequence of BolC1t00685H-R

>BolC1t00685H-R-P ID=BolC1t00685H-R-P|Name=BolC1t00685H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=621bp
MAETQEERSPSLDDCLKLLKGERDEQRLAGLLLVTKFCKNDDLVSLKKVY
EAVGIHFLDRLLRTGSGDGGENRDVYLRLSVTVLAAFCRVPEIASSVDMV
SRVPLILEIMSKRPATNILEECYELLYLVSTACEAGVMALVNSGGLRVIA
PQMSDLPDGSHAMEVAIKILQLLVTKLSSESMNIERFFELSLVVAAVARQ
FAVLHNALKFEALHLLSAIFCSDYSALLHEPLRSMPDSNWADYMRTGVVS
ILQNRVAPSEKLHALILAESMMSILGEKWLIGRVKLPSVEDYLPADRCLL
LVLESSHVEISVLSNELAYMKYEAPSSTVEEHLLKQRYLAIAFSLVEKII
KYISTVGENEGTLSDEAVFLKVIKTLDETVKVVLEYLKDAKEHGKKRGND
LLASVRVIGSYLAETPDACKEQVQDLLDYMLSVEGEEESRPFLSTCFLLP
MLCQITMKDEGCRLLASSGGYVAVVECLVKLIQSDGQNGEDNGSIFLACD
TVMNILLKREPIRFSPEMSTFTGLLKALACWAVTDGTKDPSVVMMAASIC
SLIFDFTSEDALLKQPGFDGGSLDSLGRIIARSLPSSGQGTSDTADLLEI
IAAGYSRWADRFPTIKKHNR.
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mRNA from alignment at C1:3673433..3677731-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>BolC1t00685H-R ID=BolC1t00685H-R|Name=BolC1t00685H-R|organism=Brassica oleracea HDEM|type=mRNA|length=4299bp|location=Sequence derived from alignment at C1:3673433..3677731- (Brassica oleracea HDEM)
ATGGCGGAAACACAGGAGGAACGATCTCCGTCGCTTGACGATTGCCTTAA GCTGTTGAAAGGGGAGAGGGACGAGCAGAGGCTCGCCGGTCTACTTCTCG TCACCAAATTCTGCAAGAACGATGATCTAGTCTCCCTCAAGAAGGTGTAC GAAGCCGTCGGTATTCACTTTCTCGACCGCCTTCTCCGCACAGGTAAAAC AGAATCTCGACTTACTTTCTCTAGTTTCCCTCGGTAGATAGCAGCTTCGA TTGAGACTTTCAACATAACCGAGTATGTAAAAATAGTAATCTGTAGTTAG ATACATAGGTTTGTTGCTCTCTGGAGTTTAATTTTTGAGTTTTGCAGGTA GTGGCGATGGAGGTGAAAATCGTGATGTGTATCTGCGGCTGTCTGTTACA GTTCTTGCTGCCTTCTGCAGAGTTCCGGAGATAGCTTCTTCAGTAGATAT GGTCTCTCGAGTTCCCCTTATTCTCGAAATCATGTCGAAACGGTATGTTA GATCGCCTCATTCTTTATTCTATGATTTTTCCATGTAGTTTTGCTTCTGC GTCTTTCTCAGTTTCTTTAAAGTTAAGACATTGGCTTTTGGAATTTTCAG ACCAGCTACCAACATTCTTGAAGAATGCTATGAGCTTCTGTATTTGGTGT CCACGGCTTGTGAAGCTGGTGTGATGGCTTTGGTCAACTCAGGAGGCTTG AGAGTGATAGCTCCCCAGATGTCTGATCTACCTGATGGTAATATGTTTAT TCCTTCGCTTTGCATTGTTGTATATATTGCACATTGGATATCAGTGAATG CTCTTTGTGTTAGCAATCAATTCCTGGATAAGGATTGATTATATATAACC GGTGTCAAAGTAACATGCCATGTGTTGATGGTAGATGGATTTGAGACTAA ATTCTCTCTGAAAGCTAATGTGTCCAATGTTATTCAGGCTCACATGCTAT GGAGGTTGCTATAAAGATTCTGCAGCTATTGGTTACTAAGCTTTCCAGCG AGAGCATGAATATTGAACGCTTCTTTGAACTGTCCTTGGTGGTGAGTCTA CTTACTTGATTATTTGTCTTTTGTTTTTTAAGAAATAATTACTAAAGCTC CTGTTCTCAAGTTGGAGTCCAAATGTCATGTTATTTGCTGTTCAGGTTGC TGCTGTTGCGCGACAGTTTGCGGTCTTGCACAATGCCCTAAAGTTTGAAG CACTCCATCTACTGTCTGCAATATTCTGTTCTGACTATTCTGTAAGTTTT CACTCCTTTACCTTCTGTGGAAAGTTAGCTGTAATTGAACGGTGCTATGT TCTGGGCTGTAGTTACTAGCATGGTGTAATAATTTCATGGCTGCTTAACT TTGAGTTTTTCTTTCCATTAAAATCGAGATACCAAATTGTTACATTCTTT TGCTTGGAACTTGGATGATACAACTGTCATCCTGATGACTATGGCTTTCA TTTTCTCATTGCTTTTTTCATATTCATAGCACGTTTCTATTGTATAAGCT CTACATCTTTATTTCCTTTTACGTCCAAATCTGTTTATGTCTTTCTCACA GAACTTCTTATGTGTAGGCACTTCTTCATGAACCTCTCCGTTCCATGCCA GACAGCAATTGGGCAGACTACATGCGCACAGGTGTTGTGTCAATTCTGCA GAATCGTGTTGGTGAGTTAAAAGAGATCTTTTAGTAGTTTGATTAAGTCT CTAAACATGGCTTACCCATTTATGGCATTCTTTTCTTGTCAGCCCTTCAT TTTTCCTATTAATTTTCTGATATATATCCTCTCTTCTTGTCTCATATGAA AGAAAATGACGCCAATTGCTAAAAAATGTCACTTTGCGGCACATGTCATT GATATACTTGCTTATATCATTTATGTTATTGAAGCTTTCAAGATACTTAA GAAACATGTCTTGTTTAAATGTGTAGCACCTTCCGAAAAGCTTCACGCAT TGATTCTGGCTGAAAGTATGATGTCAATTCTGGGTGAGAAGTGGCTTATC GGTCGAGTAAAACTACCCAGTGTTGAGGACTATCTTCCAGCTGATAGGTA AGCATAAGGATACACACTTGACCTACATTTTACAGCCAGATAACAGTCAT TCTGATTTCTTTTTGTAGGTGTCTTCTGTTGGTCTTAGAGTCATCACATG TTGAGATTTCTGTTTTATCAAACGAGCTCGCATACATGAAATATGAAGCT CCTAGTTCAACTGTTGAAGAACATCTCTTGAAGCAACGTTATCTGGCTAT CGCATTTTCTTTGGTAGAAAAGATCATCAAGTATATATCAACCGTTGGTG AAAATGAAGGTATTACATATGATCCTGTCTTATAAATGTATCATATCTAT TATTTTTCTGTCCTATACGACCCCTTTTCTATAAACCTTTCCGTTATTTT ATGTATATGTTCAAAGACATTATTTTCTGAACGTCCGTCTATCTTTTAGC TGTTATTTCTGAAAAATATTGGCTCGTCAGATGGCATAATGATGTTAGCC ATTTTCCAGTATTAAAGTTCTGGAATTTACATATTGATTTCGCCAGGTAC TCTAAGTGATGAAGCCGTTTTCCTCAAGGTGATTAAGACGCTTGACGAGA CAGTAAAAGTTGTGCTCGAGTATCTGAAAGATGCAAAGGTATATATCTGA TAACACGGAACTCCTTGTCTCTGTCTTTTTGTGTGTTGAAATTGTTGTAA TGATAGTTCTGTTTCATACAGGAACATGGAAAGAAGAGAGGAAATGATCT TCTTGCATCTGTGCGAGTGATTGGAAGGTACATATAAACAGTCGTTGTTC TGAAACATTACCGTTCTTTTGCTTCTTAAATCTCCCTTTTTCTGTCAAAT AATTTACATTCTAGATTGGTAAGTTTTCTGCTCATGTGATTGTTATTTGC TGCTTTATTGAAATCTGAGTACTCTTTATGCAAGAACAATCTCCATCACG CTAGCATTCACTAAAGTTTTTTTTGTGTTTCAACAGTTATCTCGCTGAAA CTCCTGACGCATGCAAAGAGCAGGTCCAAGATCTTCTGGACTATATGCTT TCAGTTGAGGGCGAAGAGGAGTCCAGGTTTGTTTGGCCCTAAAACTCTCT ATTACAACGCTGTTAACTTATTGCCTCTCAAGACAACTTGGTCTGACTAT TTTTGTTTGGACAGGCCCTTTTTGTCCACTTGCTTCTTGCTCCCAATGCT TTGCCAAATAACAATGAAGGATGAAGGATGTAGACTCTTGGCTTCTTCAG GAGGCTATGTAGCAGTGAGTAACTACGGTTTATATATTTTCTTACACCGA TGCCTGTTGACACTTGACATTATGCTTGATGAAATCCACTATCTTTCTGC CTGCTTGACCTAAATATGTTTCAGAGTGGTGATTCTATTGTTTATAATCT CATATGGAATTCTCTAATATTTCTTTGATACAGGTTGTGGAATGCCTGGT AAAACTGATCCAGTCCGATGGTCAGAATGGTGAGGACAATGGAAGCATCT TCTTGGCTTGTGATACAGTCATGAACATCCTTTTGAAGGTACCCTTGTCT CCCTAAGATAAGACCTGATTACATTTTTCCACATCCCTTATTCAGATGAT AATCACACTTGTAAATGTTGAAAACAGAGGGAGCCAATCAGATTTTCACC AGAAATGTCTACATTTACCGGGCTACTGAAAGCCTTGGCGTGTTGGGCAG GTAGTTCTAATCTTTAGATCAAAAGCTTCATTGTTTATGTTTTGCTTAAG CATGTTGATGATAAGAGTGTTTCTAAATATCTCTGACTTGTGAATTTCCT TCTTCCTTTTTAGTTACAGATGGTACTAAGGATCCATCCGTAGTGATGAT GGCTGCGAGCATCTGTTCCCTGATCTTCGATTTCACATCAGAAGATGCGC TACTCAAGCAACCTGGTTTCGATGGTGGCTCCTTGGATAGTCTGGGCCGG ATCATTGCAAGAAGCTTACCCTCATCGGGCCAGGTATGTGATGTGTCCTG TACTCGATGTAGTCTCTTGTTAAAACTCTCATTTTATGATTCTTTGATGA CTGATGATGCATAACCACTATTGTTGCAGGGTACGTCAGATACAGCCGAT CTTCTTGAGATCATAGCAGCAGGTTTGGTTTCGATATCCTTCCCATTGCA GATCACTTTTTATCCAATGCTTCATTGTTTACTGATTAGAAGAAGCATTA GTTTTCGCTTTCCTCTGATTGTAACATTATGATGATTATGAAACAGGATA CTCTCGGTGGGCAGATCGGTTCCCCACCATAAAGAAGCACAACCGTTGA
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Coding sequence (CDS) from alignment at C1:3673433..3677731-

>BolC1t00685H-R ID=BolC1t00685H-R|Name=BolC1t00685H-R|organism=Brassica oleracea HDEM|type=CDS|length=1863bp|location=Sequence derived from alignment at C1:3673433..3677731- (Brassica oleracea HDEM)
ATGGCGGAAACACAGGAGGAACGATCTCCGTCGCTTGACGATTGCCTTAA
GCTGTTGAAAGGGGAGAGGGACGAGCAGAGGCTCGCCGGTCTACTTCTCG
TCACCAAATTCTGCAAGAACGATGATCTAGTCTCCCTCAAGAAGGTGTAC
GAAGCCGTCGGTATTCACTTTCTCGACCGCCTTCTCCGCACAGGTAGTGG
CGATGGAGGTGAAAATCGTGATGTGTATCTGCGGCTGTCTGTTACAGTTC
TTGCTGCCTTCTGCAGAGTTCCGGAGATAGCTTCTTCAGTAGATATGGTC
TCTCGAGTTCCCCTTATTCTCGAAATCATGTCGAAACGACCAGCTACCAA
CATTCTTGAAGAATGCTATGAGCTTCTGTATTTGGTGTCCACGGCTTGTG
AAGCTGGTGTGATGGCTTTGGTCAACTCAGGAGGCTTGAGAGTGATAGCT
CCCCAGATGTCTGATCTACCTGATGGCTCACATGCTATGGAGGTTGCTAT
AAAGATTCTGCAGCTATTGGTTACTAAGCTTTCCAGCGAGAGCATGAATA
TTGAACGCTTCTTTGAACTGTCCTTGGTGGTTGCTGCTGTTGCGCGACAG
TTTGCGGTCTTGCACAATGCCCTAAAGTTTGAAGCACTCCATCTACTGTC
TGCAATATTCTGTTCTGACTATTCTGCACTTCTTCATGAACCTCTCCGTT
CCATGCCAGACAGCAATTGGGCAGACTACATGCGCACAGGTGTTGTGTCA
ATTCTGCAGAATCGTGTTGCACCTTCCGAAAAGCTTCACGCATTGATTCT
GGCTGAAAGTATGATGTCAATTCTGGGTGAGAAGTGGCTTATCGGTCGAG
TAAAACTACCCAGTGTTGAGGACTATCTTCCAGCTGATAGGTGTCTTCTG
TTGGTCTTAGAGTCATCACATGTTGAGATTTCTGTTTTATCAAACGAGCT
CGCATACATGAAATATGAAGCTCCTAGTTCAACTGTTGAAGAACATCTCT
TGAAGCAACGTTATCTGGCTATCGCATTTTCTTTGGTAGAAAAGATCATC
AAGTATATATCAACCGTTGGTGAAAATGAAGGTACTCTAAGTGATGAAGC
CGTTTTCCTCAAGGTGATTAAGACGCTTGACGAGACAGTAAAAGTTGTGC
TCGAGTATCTGAAAGATGCAAAGGAACATGGAAAGAAGAGAGGAAATGAT
CTTCTTGCATCTGTGCGAGTGATTGGAAGTTATCTCGCTGAAACTCCTGA
CGCATGCAAAGAGCAGGTCCAAGATCTTCTGGACTATATGCTTTCAGTTG
AGGGCGAAGAGGAGTCCAGGCCCTTTTTGTCCACTTGCTTCTTGCTCCCA
ATGCTTTGCCAAATAACAATGAAGGATGAAGGATGTAGACTCTTGGCTTC
TTCAGGAGGCTATGTAGCAGTTGTGGAATGCCTGGTAAAACTGATCCAGT
CCGATGGTCAGAATGGTGAGGACAATGGAAGCATCTTCTTGGCTTGTGAT
ACAGTCATGAACATCCTTTTGAAGAGGGAGCCAATCAGATTTTCACCAGA
AATGTCTACATTTACCGGGCTACTGAAAGCCTTGGCGTGTTGGGCAGTTA
CAGATGGTACTAAGGATCCATCCGTAGTGATGATGGCTGCGAGCATCTGT
TCCCTGATCTTCGATTTCACATCAGAAGATGCGCTACTCAAGCAACCTGG
TTTCGATGGTGGCTCCTTGGATAGTCTGGGCCGGATCATTGCAAGAAGCT
TACCCTCATCGGGCCAGGGTACGTCAGATACAGCCGATCTTCTTGAGATC
ATAGCAGCAGGATACTCTCGGTGGGCAGATCGGTTCCCCACCATAAAGAA
GCACAACCGTTGA
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