BolC1t00685H-R (mRNA) Brassica oleracea HDEM

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	BolC1t00685H-R
Unique Name	BolC1t00685H-R
Type	mRNA
Organism	Brassica oleracea HDEM (cv. HDEM, Wild cabbage)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C1	contig	C1:3673433..3677731 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Brassica oleracea HDEM OGS1.0	2018-11-02

Properties


Property Name	Value
Stop	1
Start	1
Cds size	1863

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
BolC1t00685H	BolC1t00685H	Brassica oleracea HDEM	gene	C1 3673433..3677731 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
BolC1t00685H-R	BolC1t00685H-R-P	Brassica oleracea HDEM	polypeptide	C1 3673433..3677731 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BolC1t00685H_exon1	BolC1t00685H_exon1	Brassica oleracea HDEM	exon	C1 3673433..3673485 -
BolC1t00685H_exon2	BolC1t00685H_exon2	Brassica oleracea HDEM	exon	C1 3673610..3673652 -
BolC1t00685H_exon3	BolC1t00685H_exon3	Brassica oleracea HDEM	exon	C1 3673749..3673918 -
BolC1t00685H_exon4	BolC1t00685H_exon4	Brassica oleracea HDEM	exon	C1 3674032..3674104 -
BolC1t00685H_exon5	BolC1t00685H_exon5	Brassica oleracea HDEM	exon	C1 3674194..3674298 -
BolC1t00685H_exon6	BolC1t00685H_exon6	Brassica oleracea HDEM	exon	C1 3674468..3674567 -
BolC1t00685H_exon7	BolC1t00685H_exon7	Brassica oleracea HDEM	exon	C1 3674656..3674745 -
BolC1t00685H_exon8	BolC1t00685H_exon8	Brassica oleracea HDEM	exon	C1 3674955..3675010 -
BolC1t00685H_exon9	BolC1t00685H_exon9	Brassica oleracea HDEM	exon	C1 3675094..3675185 -
BolC1t00685H_exon10	BolC1t00685H_exon10	Brassica oleracea HDEM	exon	C1 3675423..3675613 -
BolC1t00685H_exon11	BolC1t00685H_exon11	Brassica oleracea HDEM	exon	C1 3675685..3675805 -
BolC1t00685H_exon12	BolC1t00685H_exon12	Brassica oleracea HDEM	exon	C1 3676071..3676164 -
BolC1t00685H_exon13	BolC1t00685H_exon13	Brassica oleracea HDEM	exon	C1 3676491..3676586 -
BolC1t00685H_exon14	BolC1t00685H_exon14	Brassica oleracea HDEM	exon	C1 3676691..3676794 -
BolC1t00685H_exon15	BolC1t00685H_exon15	Brassica oleracea HDEM	exon	C1 3676995..3677131 -
BolC1t00685H_exon16	BolC1t00685H_exon16	Brassica oleracea HDEM	exon	C1 3677240..3677384 -
BolC1t00685H_exon17	BolC1t00685H_exon17	Brassica oleracea HDEM	exon	C1 3677539..3677731 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
BolC1t00685H	BolC1t00685H	Brassica oleracea HDEM	CDS	C1 3673433..3673485 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at C1:3673433..3677731-
coding sequence from alignment at C1:3673433..3677731-

spliced messenger RNA

>BolC1t00685H-R ID=BolC1t00685H-R|Name=BolC1t00685H-R|organism=Brassica oleracea HDEM|type=mRNA|length=1863bp|location=Sequence derived from alignment at C1:3673433..3677731- (Brassica oleracea HDEM)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGAAACACAGGAGGAACGATCTCCGTCGCTTGACGATTGCCTTAA
GCTGTTGAAAGGGGAGAGGGACGAGCAGAGGCTCGCCGGTCTACTTCTCG
TCACCAAATTCTGCAAGAACGATGATCTAGTCTCCCTCAAGAAGGTGTAC
GAAGCCGTCGGTATTCACTTTCTCGACCGCCTTCTCCGCACAGGTAGTGG
CGATGGAGGTGAAAATCGTGATGTGTATCTGCGGCTGTCTGTTACAGTTC
TTGCTGCCTTCTGCAGAGTTCCGGAGATAGCTTCTTCAGTAGATATGGTC
TCTCGAGTTCCCCTTATTCTCGAAATCATGTCGAAACGACCAGCTACCAA
CATTCTTGAAGAATGCTATGAGCTTCTGTATTTGGTGTCCACGGCTTGTG
AAGCTGGTGTGATGGCTTTGGTCAACTCAGGAGGCTTGAGAGTGATAGCT
CCCCAGATGTCTGATCTACCTGATGGCTCACATGCTATGGAGGTTGCTAT
AAAGATTCTGCAGCTATTGGTTACTAAGCTTTCCAGCGAGAGCATGAATA
TTGAACGCTTCTTTGAACTGTCCTTGGTGGTTGCTGCTGTTGCGCGACAG
TTTGCGGTCTTGCACAATGCCCTAAAGTTTGAAGCACTCCATCTACTGTC
TGCAATATTCTGTTCTGACTATTCTGCACTTCTTCATGAACCTCTCCGTT
CCATGCCAGACAGCAATTGGGCAGACTACATGCGCACAGGTGTTGTGTCA
ATTCTGCAGAATCGTGTTGCACCTTCCGAAAAGCTTCACGCATTGATTCT
GGCTGAAAGTATGATGTCAATTCTGGGTGAGAAGTGGCTTATCGGTCGAG
TAAAACTACCCAGTGTTGAGGACTATCTTCCAGCTGATAGGTGTCTTCTG
TTGGTCTTAGAGTCATCACATGTTGAGATTTCTGTTTTATCAAACGAGCT
CGCATACATGAAATATGAAGCTCCTAGTTCAACTGTTGAAGAACATCTCT
TGAAGCAACGTTATCTGGCTATCGCATTTTCTTTGGTAGAAAAGATCATC
AAGTATATATCAACCGTTGGTGAAAATGAAGGTACTCTAAGTGATGAAGC
CGTTTTCCTCAAGGTGATTAAGACGCTTGACGAGACAGTAAAAGTTGTGC
TCGAGTATCTGAAAGATGCAAAGGAACATGGAAAGAAGAGAGGAAATGAT
CTTCTTGCATCTGTGCGAGTGATTGGAAGTTATCTCGCTGAAACTCCTGA
CGCATGCAAAGAGCAGGTCCAAGATCTTCTGGACTATATGCTTTCAGTTG
AGGGCGAAGAGGAGTCCAGGCCCTTTTTGTCCACTTGCTTCTTGCTCCCA
ATGCTTTGCCAAATAACAATGAAGGATGAAGGATGTAGACTCTTGGCTTC
TTCAGGAGGCTATGTAGCAGTTGTGGAATGCCTGGTAAAACTGATCCAGT
CCGATGGTCAGAATGGTGAGGACAATGGAAGCATCTTCTTGGCTTGTGAT
ACAGTCATGAACATCCTTTTGAAGAGGGAGCCAATCAGATTTTCACCAGA
AATGTCTACATTTACCGGGCTACTGAAAGCCTTGGCGTGTTGGGCAGTTA
CAGATGGTACTAAGGATCCATCCGTAGTGATGATGGCTGCGAGCATCTGT
TCCCTGATCTTCGATTTCACATCAGAAGATGCGCTACTCAAGCAACCTGG
TTTCGATGGTGGCTCCTTGGATAGTCTGGGCCGGATCATTGCAAGAAGCT
TACCCTCATCGGGCCAGGGTACGTCAGATACAGCCGATCTTCTTGAGATC
ATAGCAGCAGGATACTCTCGGTGGGCAGATCGGTTCCCCACCATAAAGAA
GCACAACCGTTGA

protein sequence of BolC1t00685H-R

>BolC1t00685H-R-P ID=BolC1t00685H-R-P|Name=BolC1t00685H-R|organism=Brassica oleracea HDEM|type=polypeptide|length=621bp
MAETQEERSPSLDDCLKLLKGERDEQRLAGLLLVTKFCKNDDLVSLKKVY
EAVGIHFLDRLLRTGSGDGGENRDVYLRLSVTVLAAFCRVPEIASSVDMV
SRVPLILEIMSKRPATNILEECYELLYLVSTACEAGVMALVNSGGLRVIA
PQMSDLPDGSHAMEVAIKILQLLVTKLSSESMNIERFFELSLVVAAVARQ
FAVLHNALKFEALHLLSAIFCSDYSALLHEPLRSMPDSNWADYMRTGVVS
ILQNRVAPSEKLHALILAESMMSILGEKWLIGRVKLPSVEDYLPADRCLL
LVLESSHVEISVLSNELAYMKYEAPSSTVEEHLLKQRYLAIAFSLVEKII
KYISTVGENEGTLSDEAVFLKVIKTLDETVKVVLEYLKDAKEHGKKRGND
LLASVRVIGSYLAETPDACKEQVQDLLDYMLSVEGEEESRPFLSTCFLLP
MLCQITMKDEGCRLLASSGGYVAVVECLVKLIQSDGQNGEDNGSIFLACD
TVMNILLKREPIRFSPEMSTFTGLLKALACWAVTDGTKDPSVVMMAASIC
SLIFDFTSEDALLKQPGFDGGSLDSLGRIIARSLPSSGQGTSDTADLLEI
IAAGYSRWADRFPTIKKHNR.

mRNA from alignment at C1:3673433..3677731-

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>BolC1t00685H-R ID=BolC1t00685H-R|Name=BolC1t00685H-R|organism=Brassica oleracea HDEM|type=mRNA|length=4299bp|location=Sequence derived from alignment at C1:3673433..3677731- (Brassica oleracea HDEM)
ATGGCGGAAACACAGGAGGAACGATCTCCGTCGCTTGACGATTGCCTTAA
GCTGTTGAAAGGGGAGAGGGACGAGCAGAGGCTCGCCGGTCTACTTCTCG
TCACCAAATTCTGCAAGAACGATGATCTAGTCTCCCTCAAGAAGGTGTAC
GAAGCCGTCGGTATTCACTTTCTCGACCGCCTTCTCCGCACAGGTAAAAC
AGAATCTCGACTTACTTTCTCTAGTTTCCCTCGGTAGATAGCAGCTTCGA
TTGAGACTTTCAACATAACCGAGTATGTAAAAATAGTAATCTGTAGTTAG
ATACATAGGTTTGTTGCTCTCTGGAGTTTAATTTTTGAGTTTTGCAGGTA
GTGGCGATGGAGGTGAAAATCGTGATGTGTATCTGCGGCTGTCTGTTACA
GTTCTTGCTGCCTTCTGCAGAGTTCCGGAGATAGCTTCTTCAGTAGATAT
GGTCTCTCGAGTTCCCCTTATTCTCGAAATCATGTCGAAACGGTATGTTA
GATCGCCTCATTCTTTATTCTATGATTTTTCCATGTAGTTTTGCTTCTGC
GTCTTTCTCAGTTTCTTTAAAGTTAAGACATTGGCTTTTGGAATTTTCAG
ACCAGCTACCAACATTCTTGAAGAATGCTATGAGCTTCTGTATTTGGTGT
CCACGGCTTGTGAAGCTGGTGTGATGGCTTTGGTCAACTCAGGAGGCTTG
AGAGTGATAGCTCCCCAGATGTCTGATCTACCTGATGGTAATATGTTTAT
TCCTTCGCTTTGCATTGTTGTATATATTGCACATTGGATATCAGTGAATG
CTCTTTGTGTTAGCAATCAATTCCTGGATAAGGATTGATTATATATAACC
GGTGTCAAAGTAACATGCCATGTGTTGATGGTAGATGGATTTGAGACTAA
ATTCTCTCTGAAAGCTAATGTGTCCAATGTTATTCAGGCTCACATGCTAT
GGAGGTTGCTATAAAGATTCTGCAGCTATTGGTTACTAAGCTTTCCAGCG
AGAGCATGAATATTGAACGCTTCTTTGAACTGTCCTTGGTGGTGAGTCTA
CTTACTTGATTATTTGTCTTTTGTTTTTTAAGAAATAATTACTAAAGCTC
CTGTTCTCAAGTTGGAGTCCAAATGTCATGTTATTTGCTGTTCAGGTTGC
TGCTGTTGCGCGACAGTTTGCGGTCTTGCACAATGCCCTAAAGTTTGAAG
CACTCCATCTACTGTCTGCAATATTCTGTTCTGACTATTCTGTAAGTTTT
CACTCCTTTACCTTCTGTGGAAAGTTAGCTGTAATTGAACGGTGCTATGT
TCTGGGCTGTAGTTACTAGCATGGTGTAATAATTTCATGGCTGCTTAACT
TTGAGTTTTTCTTTCCATTAAAATCGAGATACCAAATTGTTACATTCTTT
TGCTTGGAACTTGGATGATACAACTGTCATCCTGATGACTATGGCTTTCA
TTTTCTCATTGCTTTTTTCATATTCATAGCACGTTTCTATTGTATAAGCT
CTACATCTTTATTTCCTTTTACGTCCAAATCTGTTTATGTCTTTCTCACA
GAACTTCTTATGTGTAGGCACTTCTTCATGAACCTCTCCGTTCCATGCCA
GACAGCAATTGGGCAGACTACATGCGCACAGGTGTTGTGTCAATTCTGCA
GAATCGTGTTGGTGAGTTAAAAGAGATCTTTTAGTAGTTTGATTAAGTCT
CTAAACATGGCTTACCCATTTATGGCATTCTTTTCTTGTCAGCCCTTCAT
TTTTCCTATTAATTTTCTGATATATATCCTCTCTTCTTGTCTCATATGAA
AGAAAATGACGCCAATTGCTAAAAAATGTCACTTTGCGGCACATGTCATT
GATATACTTGCTTATATCATTTATGTTATTGAAGCTTTCAAGATACTTAA
GAAACATGTCTTGTTTAAATGTGTAGCACCTTCCGAAAAGCTTCACGCAT
TGATTCTGGCTGAAAGTATGATGTCAATTCTGGGTGAGAAGTGGCTTATC
GGTCGAGTAAAACTACCCAGTGTTGAGGACTATCTTCCAGCTGATAGGTA
AGCATAAGGATACACACTTGACCTACATTTTACAGCCAGATAACAGTCAT
TCTGATTTCTTTTTGTAGGTGTCTTCTGTTGGTCTTAGAGTCATCACATG
TTGAGATTTCTGTTTTATCAAACGAGCTCGCATACATGAAATATGAAGCT
CCTAGTTCAACTGTTGAAGAACATCTCTTGAAGCAACGTTATCTGGCTAT
CGCATTTTCTTTGGTAGAAAAGATCATCAAGTATATATCAACCGTTGGTG
AAAATGAAGGTATTACATATGATCCTGTCTTATAAATGTATCATATCTAT
TATTTTTCTGTCCTATACGACCCCTTTTCTATAAACCTTTCCGTTATTTT
ATGTATATGTTCAAAGACATTATTTTCTGAACGTCCGTCTATCTTTTAGC
TGTTATTTCTGAAAAATATTGGCTCGTCAGATGGCATAATGATGTTAGCC
ATTTTCCAGTATTAAAGTTCTGGAATTTACATATTGATTTCGCCAGGTAC
TCTAAGTGATGAAGCCGTTTTCCTCAAGGTGATTAAGACGCTTGACGAGA
CAGTAAAAGTTGTGCTCGAGTATCTGAAAGATGCAAAGGTATATATCTGA
TAACACGGAACTCCTTGTCTCTGTCTTTTTGTGTGTTGAAATTGTTGTAA
TGATAGTTCTGTTTCATACAGGAACATGGAAAGAAGAGAGGAAATGATCT
TCTTGCATCTGTGCGAGTGATTGGAAGGTACATATAAACAGTCGTTGTTC
TGAAACATTACCGTTCTTTTGCTTCTTAAATCTCCCTTTTTCTGTCAAAT
AATTTACATTCTAGATTGGTAAGTTTTCTGCTCATGTGATTGTTATTTGC
TGCTTTATTGAAATCTGAGTACTCTTTATGCAAGAACAATCTCCATCACG
CTAGCATTCACTAAAGTTTTTTTTGTGTTTCAACAGTTATCTCGCTGAAA
CTCCTGACGCATGCAAAGAGCAGGTCCAAGATCTTCTGGACTATATGCTT
TCAGTTGAGGGCGAAGAGGAGTCCAGGTTTGTTTGGCCCTAAAACTCTCT
ATTACAACGCTGTTAACTTATTGCCTCTCAAGACAACTTGGTCTGACTAT
TTTTGTTTGGACAGGCCCTTTTTGTCCACTTGCTTCTTGCTCCCAATGCT
TTGCCAAATAACAATGAAGGATGAAGGATGTAGACTCTTGGCTTCTTCAG
GAGGCTATGTAGCAGTGAGTAACTACGGTTTATATATTTTCTTACACCGA
TGCCTGTTGACACTTGACATTATGCTTGATGAAATCCACTATCTTTCTGC
CTGCTTGACCTAAATATGTTTCAGAGTGGTGATTCTATTGTTTATAATCT
CATATGGAATTCTCTAATATTTCTTTGATACAGGTTGTGGAATGCCTGGT
AAAACTGATCCAGTCCGATGGTCAGAATGGTGAGGACAATGGAAGCATCT
TCTTGGCTTGTGATACAGTCATGAACATCCTTTTGAAGGTACCCTTGTCT
CCCTAAGATAAGACCTGATTACATTTTTCCACATCCCTTATTCAGATGAT
AATCACACTTGTAAATGTTGAAAACAGAGGGAGCCAATCAGATTTTCACC
AGAAATGTCTACATTTACCGGGCTACTGAAAGCCTTGGCGTGTTGGGCAG
GTAGTTCTAATCTTTAGATCAAAAGCTTCATTGTTTATGTTTTGCTTAAG
CATGTTGATGATAAGAGTGTTTCTAAATATCTCTGACTTGTGAATTTCCT
TCTTCCTTTTTAGTTACAGATGGTACTAAGGATCCATCCGTAGTGATGAT
GGCTGCGAGCATCTGTTCCCTGATCTTCGATTTCACATCAGAAGATGCGC
TACTCAAGCAACCTGGTTTCGATGGTGGCTCCTTGGATAGTCTGGGCCGG
ATCATTGCAAGAAGCTTACCCTCATCGGGCCAGGTATGTGATGTGTCCTG
TACTCGATGTAGTCTCTTGTTAAAACTCTCATTTTATGATTCTTTGATGA
CTGATGATGCATAACCACTATTGTTGCAGGGTACGTCAGATACAGCCGAT
CTTCTTGAGATCATAGCAGCAGGTTTGGTTTCGATATCCTTCCCATTGCA
GATCACTTTTTATCCAATGCTTCATTGTTTACTGATTAGAAGAAGCATTA
GTTTTCGCTTTCCTCTGATTGTAACATTATGATGATTATGAAACAGGATA
CTCTCGGTGGGCAGATCGGTTCCCCACCATAAAGAAGCACAACCGTTGA

Coding sequence (CDS) from alignment at C1:3673433..3677731-

>BolC1t00685H-R ID=BolC1t00685H-R|Name=BolC1t00685H-R|organism=Brassica oleracea HDEM|type=CDS|length=1863bp|location=Sequence derived from alignment at C1:3673433..3677731- (Brassica oleracea HDEM)
ATGGCGGAAACACAGGAGGAACGATCTCCGTCGCTTGACGATTGCCTTAA
GCTGTTGAAAGGGGAGAGGGACGAGCAGAGGCTCGCCGGTCTACTTCTCG
TCACCAAATTCTGCAAGAACGATGATCTAGTCTCCCTCAAGAAGGTGTAC
GAAGCCGTCGGTATTCACTTTCTCGACCGCCTTCTCCGCACAGGTAGTGG
CGATGGAGGTGAAAATCGTGATGTGTATCTGCGGCTGTCTGTTACAGTTC
TTGCTGCCTTCTGCAGAGTTCCGGAGATAGCTTCTTCAGTAGATATGGTC
TCTCGAGTTCCCCTTATTCTCGAAATCATGTCGAAACGACCAGCTACCAA
CATTCTTGAAGAATGCTATGAGCTTCTGTATTTGGTGTCCACGGCTTGTG
AAGCTGGTGTGATGGCTTTGGTCAACTCAGGAGGCTTGAGAGTGATAGCT
CCCCAGATGTCTGATCTACCTGATGGCTCACATGCTATGGAGGTTGCTAT
AAAGATTCTGCAGCTATTGGTTACTAAGCTTTCCAGCGAGAGCATGAATA
TTGAACGCTTCTTTGAACTGTCCTTGGTGGTTGCTGCTGTTGCGCGACAG
TTTGCGGTCTTGCACAATGCCCTAAAGTTTGAAGCACTCCATCTACTGTC
TGCAATATTCTGTTCTGACTATTCTGCACTTCTTCATGAACCTCTCCGTT
CCATGCCAGACAGCAATTGGGCAGACTACATGCGCACAGGTGTTGTGTCA
ATTCTGCAGAATCGTGTTGCACCTTCCGAAAAGCTTCACGCATTGATTCT
GGCTGAAAGTATGATGTCAATTCTGGGTGAGAAGTGGCTTATCGGTCGAG
TAAAACTACCCAGTGTTGAGGACTATCTTCCAGCTGATAGGTGTCTTCTG
TTGGTCTTAGAGTCATCACATGTTGAGATTTCTGTTTTATCAAACGAGCT
CGCATACATGAAATATGAAGCTCCTAGTTCAACTGTTGAAGAACATCTCT
TGAAGCAACGTTATCTGGCTATCGCATTTTCTTTGGTAGAAAAGATCATC
AAGTATATATCAACCGTTGGTGAAAATGAAGGTACTCTAAGTGATGAAGC
CGTTTTCCTCAAGGTGATTAAGACGCTTGACGAGACAGTAAAAGTTGTGC
TCGAGTATCTGAAAGATGCAAAGGAACATGGAAAGAAGAGAGGAAATGAT
CTTCTTGCATCTGTGCGAGTGATTGGAAGTTATCTCGCTGAAACTCCTGA
CGCATGCAAAGAGCAGGTCCAAGATCTTCTGGACTATATGCTTTCAGTTG
AGGGCGAAGAGGAGTCCAGGCCCTTTTTGTCCACTTGCTTCTTGCTCCCA
ATGCTTTGCCAAATAACAATGAAGGATGAAGGATGTAGACTCTTGGCTTC
TTCAGGAGGCTATGTAGCAGTTGTGGAATGCCTGGTAAAACTGATCCAGT
CCGATGGTCAGAATGGTGAGGACAATGGAAGCATCTTCTTGGCTTGTGAT
ACAGTCATGAACATCCTTTTGAAGAGGGAGCCAATCAGATTTTCACCAGA
AATGTCTACATTTACCGGGCTACTGAAAGCCTTGGCGTGTTGGGCAGTTA
CAGATGGTACTAAGGATCCATCCGTAGTGATGATGGCTGCGAGCATCTGT
TCCCTGATCTTCGATTTCACATCAGAAGATGCGCTACTCAAGCAACCTGG
TTTCGATGGTGGCTCCTTGGATAGTCTGGGCCGGATCATTGCAAGAAGCT
TACCCTCATCGGGCCAGGGTACGTCAGATACAGCCGATCTTCTTGAGATC
ATAGCAGCAGGATACTCTCGGTGGGCAGATCGGTTCCCCACCATAAAGAA
GCACAACCGTTGA

Orthology

View orthology data for BolC1t00685H-R